Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010279

Physical Location & Seq

Genomic Coordinates Reverse (-)

67105624 .. 67108407

Gene Structure 2784 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21610

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1542 bp

ATGGAGAGGCAGAGAAGCTTCTCACTGAAACCCACCAGATTCTTGGTTTTCTCTTTCACAATCTTTTCCTCTTTCATCTTCCTCACTTTCTTCACCACTTGGCTAATCAAAGCCACCCCTTCAGTTCCCCAACAAGTCCATCTCCAGTTCAACAAGTCCTCGTTCGTTTTGGGTTTCAGACCCATAACTGTTCAGTCCTTAACTGGTTTCAGGGGAAACTTACCCTTAAATGGTCCCAAAGATTCAATCTTGAAGACCACCCATTTGAGCAATCCTGAAAATGCTTCTGGGTCTGCTGGGATTTCACTTCTTAATGAATCCAGAGTGGCACCACATGAAGAAGAGAAAGGCGGTGGCGGGATGGATGGTAATTTCACAGCATTGGCACAAGTAGAGGAACCTGTGAGAGCAGGAGAAGTGGAAAAGATTGAATTAGTCTCAAGTAGTAGTAGTAAGAAGATTGAAGAGAACAAGACTGAAGCAACTGCATTTGAAAAGATTGAAATTTCAAGAAGTGGGAAGGTTGAAGATGAGAGAAAAAATGGAGTATGCGATTTTACAAGAGGGAGGTGGGTTTATGATGAGAGCTATCCTTTGTACACAAATGGTTCGTGTCCTTTGATAGATGAAGGTTTTAATTGTCAGGGCAATGGGAGATTAGATAAAGACTACATGAAGTGGAGATGGCAGCCCCAAGATTGTGAAATTCCAAGGTTCAATGCAACAAAGATGCTGGAGCTAATAAGAGGGAAGAGACTAGTTTTTGTGGGTGATTCAATCAACAGAAATCAATGGGAATCCATGTTGTGCATGTTAATGGGAGCAATAAAGGATCCAAACAGGGTCTATGAGACTCACAGGCGCAGAATCACCAAAGAAAAGGGAAATTACAGTTTCAGATTTGTGGATTACAAGTGTACTGTTGAATATTATGTGAGCCATTTCTTGGTTCATGAAGGCAAGGCAAGAGTAGGGCAGAAGAGGAGGCAAATCTTGAGAATTGATGCAATTGATCATGGTTCATCTAGATGGAGAGGAGCGGATGTTTTGATATTCAACACTGCACATTGGTGGTCTCATTATAAAACTAAAGCTGGGATTAATTACTACCAAGAAGGCGGCCAAGTTCATCCAAGGCTTGATGTTTCTACAGCTTTCAGAAAATCTTTGATGACCTGGGCTTCATGGGTTGATAGATACATCAACCCACGTAGAACCCGAGTTTTCTTTCGTAGTTCAGCACCATCCCATTTCAGGGGAGGTCAATGGAATTCAGGCGGGAGTTGTAAGGAAGCTACTAAACCACTTGAGACGTTAAGTGCTTCTTCTAGTGAGAAAAATGTGATTGCAGAGGAGGTCATAAAGCAGATGAAAACTCCCATCACATTCTTGAACATAACTGGATTATCAGAATTTAGAATAGATGGTCATCCATCTATATATGGAAGAAAATCAGCCTCAGGCAGTCAAGACTGCAGTCATTGGTGTCTTCCTGGCATTCCTGATGTGTGGAATGAATTGTTGTATGCTCATTTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

513

Amino Acids

58.58

Weight (kDa)

9.31

Isoelectric Point (pI)

46.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	184 - 235	1.4e-23	PMR5 N terminal Domain
PC-Esterase	PF13839	236 - 510	8e-100	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62390 AT3G62390
fragaria_vesca	FvH4_5g39120 FvH4_5g39120 FvH4_5g39120
malus_domestica	MD03G1294400.v1.1
prunus_persica	Prupe.8G266500_v2.0.a1
pyrus_communis	pycom03g23280
rosa_chinensis	RchiOBHm_Chr4g0407051 RchiOBHm_Chr5g0073791 RchiOBHm_Chr7g0241111
rosa_laevigata	RLG00000000596
rosa_multiflora	Rmu_sc0003187.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219260
rosa_rugosa	Rorug07G0342400 Rorug07G0342500
rosa_samantha	Rh7AG497600 Rh7BG468400 Rh7CG514500 Rh7DG481600
rosa_wichuraiana	Rw7G041980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1083
AccB1I	GGYRCC	1 cut(s)	328
AccB7I	CCANNNNNTGG	1 cut(s)	946
AccBSI	CCGCTC	1 cut(s)	1040
AciI	CCGC	5 cut(s)	351, 357, 1040, 1119, 1278
AclWI	GGATC	2 cut(s)	827, 840
AcoI	YGGCCR	1 cut(s)	1120
AcsI	RAATTY	4 cut(s)	504, 705, 1270, 1412
AcuI	CTGAAG	2 cut(s)	105, 498
AfaI	GTAC	2 cut(s)	599, 919
AfiI	CCNNNNNNNGG	4 cut(s)	230, 946, 1254, 1255
AhlI	ACTAGT	1 cut(s)	757
AjnI	CCWGG	2 cut(s)	1175, 1492
AleI	CACNNNNGTG	1 cut(s)	1069
AluBI	AGCT	6 cut(s)	18, 588, 739, 1094, 1154, 1295
AluI	AGCT	6 cut(s)	18, 588, 739, 1094, 1154, 1295
Alw26I	GTCTC	5 cut(s)	442, 748, 845, 1080, 1304
AlwI	GGATC	2 cut(s)	827, 840
Ama87I	CYCGRG	1 cut(s)	1218
AoxI	GGCC	1 cut(s)	1120
ApeKI	GCWGC	1 cut(s)	688
ApoI	RAATTY	4 cut(s)	504, 705, 1270, 1412
ArsI	GACNNNNNNTTYG	2 cut(s)	247, 279
AseI	ATTAAT	1 cut(s)	1101
AspLEI	GCGC	1 cut(s)	864
AspS9I	GGNCC	1 cut(s)	233
AsuHPI	GGTGA	3 cut(s)	85, 782, 862
AvaI	CYCGRG	1 cut(s)	1218
AvaII	GGWCC	1 cut(s)	233
AxyI	CCTNAGG	1 cut(s)	1459
BamHI	GGATCC	1 cut(s)	832
BanI	GGYRCC	1 cut(s)	328
BbsI	GAAGAC	2 cut(s)	260, 1481
BbvI	GCAGC	1 cut(s)	700
BccI	CCATC	9 cut(s)	147, 355, 359, 678, 1023, 1252, 1388, 1418, 1441
BciT130I	CCWGG	2 cut(s)	1177, 1494
BclI	TGATCA	1 cut(s)	1012
BcoDI	GTCTC	5 cut(s)	442, 748, 845, 1080, 1304
BcuI	ACTAGT	1 cut(s)	757
BfaI	CTAG	3 cut(s)	758, 1026, 1329
BfmI	CTRYAG	2 cut(s)	1149, 1474
BisI	GCNGC	2 cut(s)	689, 1120
BlsI	GCNGC	2 cut(s)	690, 1121
Bme1390I	CCNGG	2 cut(s)	1177, 1494
Bme18I	GGWCC	1 cut(s)	233
BmeT110I	CYCGRG	1 cut(s)	1218
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	4 cut(s)	235, 330, 399, 834
BmrFI	CCNGG	2 cut(s)	1177, 1494
BmsI	GCATC	2 cut(s)	720, 994
BoxI	GACNNNNGTC	1 cut(s)	1476
BpiI	GAAGAC	2 cut(s)	260, 1481
BpmI	CTGGAG	2 cut(s)	128, 755
BpuEI	CTTGAG	3 cut(s)	424, 1015, 1328
BsaAI	YACGTR	1 cut(s)	1211
BsaBI	GATNNNNATC	1 cut(s)	1428
BsaI	GGTCTC	1 cut(s)	1080
BsaJI	CCNNGG	3 cut(s)	710, 1133, 1176
BsaXI	ACNNNNNCTCC	2 cut(s)	1029, 1059
Bsc4I	CCNNNNNNNGG	4 cut(s)	230, 946, 1254, 1255
Bse1I	ACTGG	3 cut(s)	145, 208, 1405
Bse21I	CCTNAGG	1 cut(s)	1459
Bse3DI	GCAATG	1 cut(s)	655
Bse8I	GATNNNNATC	1 cut(s)	1428
BseBI	CCWGG	2 cut(s)	1177, 1494
BseDI	CCNNGG	3 cut(s)	710, 1133, 1176
BseGI	GGATG	6 cut(s)	366, 370, 1048, 1129, 1244, 1429
BseJI	GATNNNNATC	1 cut(s)	1428
BseLI	CCNNNNNNNGG	4 cut(s)	230, 946, 1254, 1255
BseMI	GCAATG	1 cut(s)	655
BseMII	CTCAG	1 cut(s)	1473
BseNI	ACTGG	3 cut(s)	145, 208, 1405
BseRI	GAGGAG	3 cut(s)	997, 1050, 1367
BseXI	GCAGC	1 cut(s)	700
BseYI	CCCAGC	2 cut(s)	296, 1094
BsgI	GTGCAG	1 cut(s)	1047
BshFI	GGCC	1 cut(s)	1122
BshNI	GGYRCC	1 cut(s)	328
BsiHKCI	CYCGRG	1 cut(s)	1218
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	4 cut(s)	230, 946, 1254, 1255
BsmAI	GTCTC	5 cut(s)	442, 748, 845, 1080, 1304
BsmBI	CGTCTC	1 cut(s)	1304
BsmFI	GGGAC	1 cut(s)	219
BsmI	GAATGC	1 cut(s)	1497
BsnI	GGCC	1 cut(s)	1122
Bso31I	GGTCTC	1 cut(s)	1080
BsoBI	CYCGRG	1 cut(s)	1218
Bsp1407I	TGTACA	1 cut(s)	597
Bsp143I	GATC	2 cut(s)	832, 1012
BspACI	CCGC	5 cut(s)	351, 357, 1040, 1119, 1278
BspANI	GGCC	1 cut(s)	1122
BspCNI	CTCAG	1 cut(s)	1472
BspHI	TCATGA	1 cut(s)	952
BspLI	GGNNCC	4 cut(s)	235, 330, 399, 834
BspMAI	CTGCAG	1 cut(s)	1478
BspPI	GGATC	2 cut(s)	827, 840
BspT107I	GGYRCC	1 cut(s)	328
BspTNI	GGTCTC	1 cut(s)	1080
BsrBI	CCGCTC	1 cut(s)	1040
BsrDI	GCAATG	1 cut(s)	655
BsrGI	TGTACA	1 cut(s)	597
BsrI	ACTGG	3 cut(s)	145, 208, 1405
BssECI	CCNNGG	3 cut(s)	710, 1133, 1176
BssMI	GATC	2 cut(s)	832, 1012
BssT1I	CCWWGG	2 cut(s)	710, 1133
Bst2UI	CCWGG	2 cut(s)	1177, 1494
Bst4CI	ACNGT	3 cut(s)	190, 893, 922
Bst6I	CTCTTC	4 cut(s)	336, 459, 746, 974
BstAUI	TGTACA	1 cut(s)	597
BstBAI	YACGTR	1 cut(s)	1211
BstDEI	CTNAG	1 cut(s)	1459
BstF5I	GGATG	6 cut(s)	366, 370, 1048, 1129, 1244, 1429
BstHHI	GCGC	1 cut(s)	864
BstKTI	GATC	2 cut(s)	835, 1015
BstMAI	GTCTC	5 cut(s)	442, 748, 845, 1080, 1304
BstMBI	GATC	2 cut(s)	832, 1012
BstNI	CCWGG	2 cut(s)	1177, 1494
BstNSI	RCATGY	1 cut(s)	814
BstPAI	GACNNNNGTC	1 cut(s)	1476
BstSCI	CCNGG	2 cut(s)	1175, 1492
BstSFI	CTRYAG	2 cut(s)	1149, 1474
BstV1I	GCAGC	1 cut(s)	700
BstV2I	GAAGAC	2 cut(s)	260, 1481
BstX2I	RGATCY	1 cut(s)	832
BstXI	CCANNNNNNTGG	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	832
Bsu36I	CCTNAGG	1 cut(s)	1459
BsuRI	GGCC	1 cut(s)	1122
BtsCI	GGATG	6 cut(s)	366, 370, 1048, 1129, 1244, 1429
BtsI	GCAGTG	1 cut(s)	1059
BtsIMutI	CAGTG	2 cut(s)	23, 1059
CciI	TCATGA	1 cut(s)	952
CfoI	GCGC	1 cut(s)	864
Cfr13I	GGNCC	1 cut(s)	233
Csp6I	GTAC	2 cut(s)	598, 918
CviAII	CATG	7 cut(s)	335, 673, 802, 811, 953, 1016, 1185
CviQI	GTAC	2 cut(s)	598, 918
DdeI	CTNAG	1 cut(s)	1459
DpnI	GATC	2 cut(s)	834, 1014
DpnII	GATC	2 cut(s)	832, 1012
EaeI	YGGCCR	1 cut(s)	1120
Eam1104I	CTCTTC	4 cut(s)	336, 459, 746, 974
EarI	CTCTTC	4 cut(s)	336, 459, 746, 974
Eco130I	CCWWGG	2 cut(s)	710, 1133
Eco31I	GGTCTC	1 cut(s)	1080
Eco47I	GGWCC	1 cut(s)	233
Eco57I	CTGAAG	2 cut(s)	105, 498
Eco81I	CCTNAGG	1 cut(s)	1459
Eco88I	CYCGRG	1 cut(s)	1218
EcoRI	GAATTC	1 cut(s)	1270
EcoRII	CCWGG	2 cut(s)	1175, 1492
EcoT14I	CCWWGG	2 cut(s)	710, 1133
ErhI	CCWWGG	2 cut(s)	710, 1133
Esp3I	CGTCTC	1 cut(s)	1304
FaeI	CATG	7 cut(s)	338, 676, 805, 814, 956, 1019, 1188
FalI	AAGNNNNNCTT	2 cut(s)	1309, 1341
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	7 cut(s)	334, 672, 801, 810, 952, 1015, 1184
FauI	CCCGC	2 cut(s)	350, 1271
FbaI	TGATCA	1 cut(s)	1012
Fnu4HI	GCNGC	2 cut(s)	689, 1120
FokI	GGATG	6 cut(s)	373, 377, 1055, 1116, 1231, 1416
Fsp4HI	GCNGC	2 cut(s)	689, 1120
FspBI	CTAG	3 cut(s)	758, 1026, 1329
GlaI	GCGC	1 cut(s)	863
GluI	GCNGC	2 cut(s)	689, 1120
GsaI	CCCAGC	2 cut(s)	300, 1098
GsuI	CTGGAG	2 cut(s)	128, 755
HaeIII	GGCC	1 cut(s)	1122
HhaI	GCGC	1 cut(s)	864
Hin1II	CATG	7 cut(s)	338, 676, 805, 814, 956, 1019, 1188
Hin6I	GCGC	1 cut(s)	862
HinP1I	GCGC	1 cut(s)	862
HindIII	AAGCTT	1 cut(s)	16
HinfI	GANTC	7 cut(s)	39, 242, 317, 773, 797, 853, 867
HphI	GGTGA	3 cut(s)	85, 782, 862
Hpy166II	GTNNAC	2 cut(s)	600, 918
Hpy188I	TCNGA	4 cut(s)	179, 899, 1160, 1411
Hpy8I	GTNNAC	2 cut(s)	600, 918
HpyAV	CCTTC	5 cut(s)	129, 514, 623, 950, 1109
HpyCH4III	ACNGT	3 cut(s)	190, 893, 922
HpyCH4IV	ACGT	2 cut(s)	1210, 1313
HpyCH4V	TGCA	8 cut(s)	488, 722, 810, 1007, 1064, 1349, 1476, 1537
HpyF3I	CTNAG	1 cut(s)	1459
HpySE526I	ACGT	2 cut(s)	1210, 1313
Hsp92II	CATG	7 cut(s)	338, 676, 805, 814, 956, 1019, 1188
HspAI	GCGC	1 cut(s)	862
Ksp22I	TGATCA	1 cut(s)	1012
Kzo9I	GATC	2 cut(s)	832, 1012
LmnI	GCTCC	3 cut(s)	736, 821, 1037
Lsp1109I	GCAGC	1 cut(s)	700
LweI	GCATC	2 cut(s)	720, 994
MaeI	CTAG	3 cut(s)	758, 1026, 1329
MaeII	ACGT	2 cut(s)	1210, 1313
MalI	GATC	2 cut(s)	834, 1014
MbiI	CCGCTC	1 cut(s)	1040
MboI	GATC	2 cut(s)	832, 1012
MfeI	CAATTG	1 cut(s)	1008
MflI	RGATCY	1 cut(s)	832
MlyI	GAGTC	1 cut(s)	847
MseI	TTAA	7 cut(s)	200, 227, 312, 636, 815, 1101, 1316
MslI	CAYNNNNRTG	3 cut(s)	815, 1027, 1069
MspR9I	CCNGG	2 cut(s)	1177, 1494
MunI	CAATTG	1 cut(s)	1008
Mva1269I	GAATGC	1 cut(s)	1497
MvaI	CCWGG	2 cut(s)	1177, 1494
NdeII	GATC	2 cut(s)	832, 1012
NlaIII	CATG	7 cut(s)	338, 676, 805, 814, 956, 1019, 1188
NlaIV	GGNNCC	4 cut(s)	235, 330, 399, 834
NspI	RCATGY	1 cut(s)	814
OliI	CACNNNNGTG	1 cut(s)	1069
PagI	TCATGA	1 cut(s)	952
PcsI	WCGNNNNNNNCGW	1 cut(s)	1216
PctI	GAATGC	1 cut(s)	1497
PfeI	GAWTC	6 cut(s)	39, 242, 317, 773, 797, 867
PflMI	CCANNNNNTGG	1 cut(s)	946
PkrI	GCNGC	2 cut(s)	690, 1121
PleI	GAGTC	1 cut(s)	847
PpsI	GAGTC	1 cut(s)	847
Ppu21I	YACGTR	1 cut(s)	1211
PshAI	GACNNNNGTC	1 cut(s)	1476
PshBI	ATTAAT	1 cut(s)	1101
PsiI	TTATAA	1 cut(s)	1083
Psp6I	CCWGG	2 cut(s)	1175, 1492
PspFI	CCCAGC	2 cut(s)	296, 1094
PspGI	CCWGG	2 cut(s)	1175, 1492
PspN4I	GGNNCC	4 cut(s)	235, 330, 399, 834
PspPI	GGNCC	1 cut(s)	233
PstI	CTGCAG	1 cut(s)	1478
PsuI	RGATCY	1 cut(s)	832
RsaI	GTAC	2 cut(s)	599, 919
RsaNI	GTAC	2 cut(s)	598, 918
RseI	CAYNNNNRTG	3 cut(s)	815, 1027, 1069
SaqAI	TTAA	7 cut(s)	200, 227, 312, 636, 815, 1101, 1316
SatI	GCNGC	2 cut(s)	689, 1120
Sau3AI	GATC	2 cut(s)	832, 1012
Sau96I	GGNCC	1 cut(s)	233
SchI	GAGTC	1 cut(s)	847
ScrFI	CCNGG	2 cut(s)	1177, 1494
SfaNI	GCATC	2 cut(s)	720, 994
SfcI	CTRYAG	2 cut(s)	1149, 1474
SinI	GGWCC	1 cut(s)	233
SmiMI	CAYNNNNRTG	3 cut(s)	815, 1027, 1069
SmlI	CTYRAG	3 cut(s)	439, 994, 1307
SmoI	CTYRAG	3 cut(s)	439, 994, 1307
SpeI	ACTAGT	1 cut(s)	757
SsiI	CCGC	5 cut(s)	351, 357, 1040, 1119, 1278
SspI	AATATT	1 cut(s)	929
SspMI	CTAG	3 cut(s)	758, 1026, 1329
StyD4I	CCNGG	2 cut(s)	1175, 1492
StyI	CCWWGG	2 cut(s)	710, 1133
TaaI	ACNGT	3 cut(s)	190, 893, 922
TaiI	ACGT	2 cut(s)	1213, 1316
TatI	WGTACW	2 cut(s)	597, 917
TauI	GCSGC	1 cut(s)	1122
TfiI	GAWTC	6 cut(s)	39, 242, 317, 773, 797, 867
Tru1I	TTAA	7 cut(s)	200, 227, 312, 636, 815, 1101, 1316
Tru9I	TTAA	7 cut(s)	200, 227, 312, 636, 815, 1101, 1316
TscAI	CASTG	2 cut(s)	30, 1066
TseI	GCWGC	1 cut(s)	688
TspRI	CASTG	2 cut(s)	30, 1066
Van91I	CCANNNNNTGG	1 cut(s)	946
VpaK11BI	GGWCC	1 cut(s)	233
VspI	ATTAAT	1 cut(s)	1101
XapI	RAATTY	4 cut(s)	504, 705, 1270, 1412
XbaI	TCTAGA	1 cut(s)	1025
XceI	RCATGY	1 cut(s)	814
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XspI	CTAG	3 cut(s)	758, 1026, 1329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.