Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0010279

Physical Location & Seq

Genomic Coordinates Reverse (-)

69769429 .. 69771369

Gene Structure 1941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG497600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1539 bp

ATGGAGAGGCAGAGAAGCTTCTCACTGAAACCCACCAGATTCTTGGTTTTCTCTTTCACAATCTTTTCCTCTTTCATCTTCCTCACTTTCTTCACCACTTGGCTGATCAAAGCCACTCCTTCAGTTCCCCAACAAGTCCATCTTCAGTTCAACAAGTCCTCGTTCGTTTTGGGTTTCAGACCCGCAACTGTTCAGTCCTTAACTGGTATCAGTGGAAACTTACCCTTAAATGGTCTCAAAGATTCAATCTTGAAGACCACCCATTTGAGCAAACCTGAAAATGCTTCTGGGTCTGCTGGGATTTCACTTCTTAATGAATCCAAAGCGGCACCACATGAAGAAGAGAGAGGCGGTGGTGTTTTGGATGGTAATTTCACAGCATTGGCACAAGTAGAGAAACCTGTGAGAGCAGAGGAAGTGGAAAAGATTGAATTAGTCTCAAGCAGTAGTAAGAAGATTGAAGAGAACAAGACTGAAGCAACTGCATTTGAAAAGATTGAAATTTCAAGAAGTGGGAAGGTTGAAGATAAGAGAAAAAATGGAGTATGTGATTTTACAAGAGGGAGGTGGGTTTATGATGAGAGCTATCCTTTGTACACAAATGGTTCGTGTCCTTTGATAGATGAAGGTTTTAATTGTCAGGGCAATGGGAGATTAGATAAAGACTACATGAAGTGGAGATGGCAGCCCCAAGATTGTGAAATTCCAAGGTTCAATGCAACAAAGATGCTGGAGCTAATAAGAGGGAAGAGACTAGTTTTTGTGGGTGATTCAATCAACAGAAATCAATGGGAATCGATGTTGTGCATGTTAATGGGAGCAATAAAGGATCCAAACAGGGTCTATGAGACTCACAGGCGCAGAATCACCAAAGAAAAGGGAAATTACAGTTTCAGATTTGTGGATTACAAGTGTACTGTTGAATATTATGTGAGCCATTTCTTAGTTCATGAAGGCAAGGCAAGAGTAGGGCAGAAGAGGAAGCAAATCTTGAGAATTGATGCAATTGATCATGGTTCATCTAGATGGAGAGGAGCTGATGTTTTGATATTCAACACTGCACATTGGTGGTCTCATTATAAAACTAAAGCTGGGATTAATTACTACCAAGAAGGCGGCCAAGTTCATCCAAGGCTTGATGTTTCTACAGCTTTCAGAAAATCTTTGATGACCTGGGCTTCATGGGTTGATAGATACATCAACCCACGTAGAACCCGAGTTTTCTTCCGTAGTTCAGCACCATCCCATTTCAGGGGAGGTCAATGGAATTCAGGCGGGAGTTGTAAGGAAGCTACTAAACCACTTGAGACGTTTAGTGCTTCTTCTAGTGAGAAAAATGTGATTGCAGAGGAGGTCATAAAGCAGATGAAAACTCCCATCACATTCTTGAACATAACTGGATTATCAGAATTTAGAATAGATGGTCATCCATCTATATATGGAAGAAAATCAGCCTCAGGCAGTCAAGACTGCAGTCATTGGTGTCTTCCTGGCATTCCTGATGTGTGGAATGAATTGTTGTATGCTCATTTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

512

Amino Acids

58.45

Weight (kDa)

9.41

Isoelectric Point (pI)

45.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	183 - 234	1.3e-23	PMR5 N terminal Domain
PC-Esterase	PF13839	235 - 509	6.8e-100	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62390 AT3G62390
fragaria_vesca	FvH4_5g39120 FvH4_5g39120 FvH4_5g39120
malus_domestica	MD03G1294400.v1.1
prunus_persica	Prupe.8G266500_v2.0.a1
pyrus_communis	pycom03g23280
rosa_chinensis	RchiOBHm_Chr4g0407051 RchiOBHm_Chr5g0073791 RchiOBHm_Chr7g0241111
rosa_laevigata	RLG00000000596
rosa_multiflora	Rmu_sc0003187.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219260
rosa_rugosa	Rorug07G0342400 Rorug07G0342500
rosa_samantha	Rh7AG497600 Rh7BG468400 Rh7CG514500 Rh7DG481600
rosa_wichuraiana	Rw7G041980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1080
AccB1I	GGYRCC	1 cut(s)	328
AciI	CCGC	5 cut(s)	183, 326, 351, 1116, 1275
AclWI	GGATC	2 cut(s)	824, 837
AcoI	YGGCCR	1 cut(s)	1117
AcsI	RAATTY	4 cut(s)	501, 702, 1267, 1409
AcuI	CTGAAG	3 cut(s)	105, 128, 495
AfaI	GTAC	2 cut(s)	596, 916
AfiI	CCNNNNNNNGG	3 cut(s)	230, 1251, 1252
AhlI	ACTAGT	1 cut(s)	754
AjnI	CCWGG	2 cut(s)	1172, 1489
AleI	CACNNNNGTG	1 cut(s)	1066
AluBI	AGCT	7 cut(s)	18, 585, 736, 1037, 1091, 1151, 1292
AluI	AGCT	7 cut(s)	18, 585, 736, 1037, 1091, 1151, 1292
Alw26I	GTCTC	6 cut(s)	239, 442, 745, 842, 1077, 1301
AlwI	GGATC	2 cut(s)	824, 837
Ama87I	CYCGRG	1 cut(s)	1215
AoxI	GGCC	1 cut(s)	1117
ApeKI	GCWGC	1 cut(s)	685
ApoI	RAATTY	4 cut(s)	501, 702, 1267, 1409
ArsI	GACNNNNNNTTYG	2 cut(s)	247, 279
AseI	ATTAAT	1 cut(s)	1098
AspLEI	GCGC	1 cut(s)	861
AsuHPI	GGTGA	3 cut(s)	85, 779, 859
AvaI	CYCGRG	1 cut(s)	1215
AxyI	CCTNAGG	1 cut(s)	1456
BamHI	GGATCC	1 cut(s)	829
BanI	GGYRCC	1 cut(s)	328
BbsI	GAAGAC	2 cut(s)	260, 1478
BbvI	GCAGC	1 cut(s)	697
BccI	CCATC	8 cut(s)	147, 359, 675, 1020, 1249, 1385, 1415, 1438
BciT130I	CCWGG	2 cut(s)	1174, 1491
BclI	TGATCA	2 cut(s)	105, 1009
BcoDI	GTCTC	6 cut(s)	239, 442, 745, 842, 1077, 1301
BcuI	ACTAGT	1 cut(s)	754
BfaI	CTAG	3 cut(s)	755, 1023, 1326
BfmI	CTRYAG	2 cut(s)	1146, 1471
BisI	GCNGC	3 cut(s)	327, 686, 1117
BlsI	GCNGC	3 cut(s)	328, 687, 1118
Bme1390I	CCNGG	2 cut(s)	1174, 1491
BmeT110I	CYCGRG	1 cut(s)	1215
BmiI	GGNNCC	2 cut(s)	330, 831
BmrFI	CCNGG	2 cut(s)	1174, 1491
BmsI	GCATC	2 cut(s)	717, 991
BoxI	GACNNNNGTC	1 cut(s)	1473
BpiI	GAAGAC	2 cut(s)	260, 1478
BpmI	CTGGAG	1 cut(s)	752
BpuEI	CTTGAG	3 cut(s)	424, 1012, 1325
Bsa29I	ATCGAT	1 cut(s)	797
BsaAI	YACGTR	1 cut(s)	1208
BsaBI	GATNNNNATC	1 cut(s)	1425
BsaI	GGTCTC	2 cut(s)	239, 1077
BsaJI	CCNNGG	3 cut(s)	707, 1130, 1173
BsaXI	ACNNNNNCTCC	2 cut(s)	1026, 1056
Bsc4I	CCNNNNNNNGG	3 cut(s)	230, 1251, 1252
Bse1I	ACTGG	2 cut(s)	208, 1402
Bse21I	CCTNAGG	1 cut(s)	1456
Bse3DI	GCAATG	1 cut(s)	652
Bse8I	GATNNNNATC	1 cut(s)	1425
BseBI	CCWGG	2 cut(s)	1174, 1491
BseCI	ATCGAT	1 cut(s)	797
BseDI	CCNNGG	3 cut(s)	707, 1130, 1173
BseGI	GGATG	4 cut(s)	370, 1126, 1241, 1426
BseJI	GATNNNNATC	1 cut(s)	1425
BseLI	CCNNNNNNNGG	3 cut(s)	230, 1251, 1252
BseMI	GCAATG	1 cut(s)	652
BseMII	CTCAG	1 cut(s)	1470
BseNI	ACTGG	2 cut(s)	208, 1402
BseRI	GAGGAG	2 cut(s)	1047, 1364
BseXI	GCAGC	1 cut(s)	697
BseYI	CCCAGC	2 cut(s)	296, 1091
BsgI	GTGCAG	1 cut(s)	1044
BshFI	GGCC	1 cut(s)	1119
BshNI	GGYRCC	1 cut(s)	328
BshVI	ATCGAT	1 cut(s)	797
BsiHKCI	CYCGRG	1 cut(s)	1215
BslI	CCNNNNNNNGG	3 cut(s)	230, 1251, 1252
BsmAI	GTCTC	6 cut(s)	239, 442, 745, 842, 1077, 1301
BsmBI	CGTCTC	1 cut(s)	1301
BsmI	GAATGC	1 cut(s)	1494
BsnI	GGCC	1 cut(s)	1119
Bso31I	GGTCTC	2 cut(s)	239, 1077
BsoBI	CYCGRG	1 cut(s)	1215
Bsp1407I	TGTACA	1 cut(s)	594
Bsp143I	GATC	3 cut(s)	105, 829, 1009
BspACI	CCGC	5 cut(s)	183, 326, 351, 1116, 1275
BspANI	GGCC	1 cut(s)	1119
BspCNI	CTCAG	1 cut(s)	1469
BspDI	ATCGAT	1 cut(s)	797
BspHI	TCATGA	1 cut(s)	949
BspLI	GGNNCC	2 cut(s)	330, 831
BspMAI	CTGCAG	1 cut(s)	1475
BspPI	GGATC	2 cut(s)	824, 837
BspT107I	GGYRCC	1 cut(s)	328
BspTNI	GGTCTC	2 cut(s)	239, 1077
BsrDI	GCAATG	1 cut(s)	652
BsrGI	TGTACA	1 cut(s)	594
BsrI	ACTGG	2 cut(s)	208, 1402
BssECI	CCNNGG	3 cut(s)	707, 1130, 1173
BssMI	GATC	3 cut(s)	105, 829, 1009
BssT1I	CCWWGG	2 cut(s)	707, 1130
Bst2UI	CCWGG	2 cut(s)	1174, 1491
Bst4CI	ACNGT	3 cut(s)	190, 890, 919
Bst6I	CTCTTC	4 cut(s)	336, 456, 743, 971
BstAUI	TGTACA	1 cut(s)	594
BstBAI	YACGTR	1 cut(s)	1208
BstDEI	CTNAG	2 cut(s)	943, 1456
BstF5I	GGATG	4 cut(s)	370, 1126, 1241, 1426
BstHHI	GCGC	1 cut(s)	861
BstKTI	GATC	3 cut(s)	108, 832, 1012
BstMAI	GTCTC	6 cut(s)	239, 442, 745, 842, 1077, 1301
BstMBI	GATC	3 cut(s)	105, 829, 1009
BstNI	CCWGG	2 cut(s)	1174, 1491
BstNSI	RCATGY	1 cut(s)	811
BstPAI	GACNNNNGTC	1 cut(s)	1473
BstSCI	CCNGG	2 cut(s)	1172, 1489
BstSFI	CTRYAG	2 cut(s)	1146, 1471
BstV1I	GCAGC	1 cut(s)	697
BstV2I	GAAGAC	2 cut(s)	260, 1478
BstX2I	RGATCY	1 cut(s)	829
BstXI	CCANNNNNNTGG	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	829
Bsu15I	ATCGAT	1 cut(s)	797
Bsu36I	CCTNAGG	1 cut(s)	1456
BsuRI	GGCC	1 cut(s)	1119
BsuTUI	ATCGAT	1 cut(s)	797
BtsCI	GGATG	4 cut(s)	370, 1126, 1241, 1426
BtsI	GCAGTG	1 cut(s)	1056
BtsIMutI	CAGTG	3 cut(s)	23, 217, 1056
CciI	TCATGA	1 cut(s)	949
CfoI	GCGC	1 cut(s)	861
ClaI	ATCGAT	1 cut(s)	797
Csp6I	GTAC	2 cut(s)	595, 915
CviAII	CATG	6 cut(s)	335, 670, 808, 950, 1013, 1182
CviQI	GTAC	2 cut(s)	595, 915
DdeI	CTNAG	2 cut(s)	943, 1456
DpnI	GATC	3 cut(s)	107, 831, 1011
DpnII	GATC	3 cut(s)	105, 829, 1009
EaeI	YGGCCR	1 cut(s)	1117
Eam1104I	CTCTTC	4 cut(s)	336, 456, 743, 971
EarI	CTCTTC	4 cut(s)	336, 456, 743, 971
Eco130I	CCWWGG	2 cut(s)	707, 1130
Eco31I	GGTCTC	2 cut(s)	239, 1077
Eco57I	CTGAAG	3 cut(s)	105, 128, 495
Eco81I	CCTNAGG	1 cut(s)	1456
Eco88I	CYCGRG	1 cut(s)	1215
EcoRI	GAATTC	1 cut(s)	1267
EcoRII	CCWGG	2 cut(s)	1172, 1489
EcoT14I	CCWWGG	2 cut(s)	707, 1130
ErhI	CCWWGG	2 cut(s)	707, 1130
Esp3I	CGTCTC	1 cut(s)	1301
FaeI	CATG	6 cut(s)	338, 673, 811, 953, 1016, 1185
FalI	AAGNNNNNCTT	4 cut(s)	126, 158, 974, 1006
FatI	CATG	6 cut(s)	334, 669, 807, 949, 1012, 1181
FauI	CCCGC	2 cut(s)	190, 1268
FbaI	TGATCA	2 cut(s)	105, 1009
Fnu4HI	GCNGC	3 cut(s)	327, 686, 1117
FokI	GGATG	4 cut(s)	377, 1113, 1228, 1413
Fsp4HI	GCNGC	3 cut(s)	327, 686, 1117
FspBI	CTAG	3 cut(s)	755, 1023, 1326
GlaI	GCGC	1 cut(s)	860
GluI	GCNGC	3 cut(s)	327, 686, 1117
GsaI	CCCAGC	2 cut(s)	300, 1095
GsuI	CTGGAG	1 cut(s)	752
HaeIII	GGCC	1 cut(s)	1119
HhaI	GCGC	1 cut(s)	861
Hin1II	CATG	6 cut(s)	338, 673, 811, 953, 1016, 1185
Hin6I	GCGC	1 cut(s)	859
HinP1I	GCGC	1 cut(s)	859
HindIII	AAGCTT	1 cut(s)	16
HinfI	GANTC	7 cut(s)	39, 242, 317, 770, 794, 850, 864
HphI	GGTGA	3 cut(s)	85, 779, 859
Hpy166II	GTNNAC	2 cut(s)	597, 915
Hpy188I	TCNGA	4 cut(s)	179, 896, 1157, 1408
Hpy188III	TCNNGA	8 cut(s)	250, 507, 950, 991, 1023, 1387, 1466, 1499
Hpy8I	GTNNAC	2 cut(s)	597, 915
HpyAV	CCTTC	5 cut(s)	129, 511, 620, 947, 1106
HpyCH4III	ACNGT	3 cut(s)	190, 890, 919
HpyCH4IV	ACGT	2 cut(s)	1207, 1310
HpyCH4V	TGCA	8 cut(s)	485, 719, 807, 1004, 1061, 1346, 1473, 1534
HpyF3I	CTNAG	2 cut(s)	943, 1456
HpySE526I	ACGT	2 cut(s)	1207, 1310
Hsp92II	CATG	6 cut(s)	338, 673, 811, 953, 1016, 1185
HspAI	GCGC	1 cut(s)	859
Ksp22I	TGATCA	2 cut(s)	105, 1009
Kzo9I	GATC	3 cut(s)	105, 829, 1009
LmnI	GCTCC	3 cut(s)	733, 818, 1034
Lsp1109I	GCAGC	1 cut(s)	697
LweI	GCATC	2 cut(s)	717, 991
MaeI	CTAG	3 cut(s)	755, 1023, 1326
MaeII	ACGT	2 cut(s)	1207, 1310
MalI	GATC	3 cut(s)	107, 831, 1011
MboI	GATC	3 cut(s)	105, 829, 1009
MfeI	CAATTG	1 cut(s)	1005
MflI	RGATCY	1 cut(s)	829
MlyI	GAGTC	1 cut(s)	844
MseI	TTAA	6 cut(s)	200, 227, 312, 633, 812, 1098
MslI	CAYNNNNRTG	3 cut(s)	812, 1024, 1066
MspR9I	CCNGG	2 cut(s)	1174, 1491
MunI	CAATTG	1 cut(s)	1005
Mva1269I	GAATGC	1 cut(s)	1494
MvaI	CCWGG	2 cut(s)	1174, 1491
NdeII	GATC	3 cut(s)	105, 829, 1009
NlaIII	CATG	6 cut(s)	338, 673, 811, 953, 1016, 1185
NlaIV	GGNNCC	2 cut(s)	330, 831
NspI	RCATGY	1 cut(s)	811
OliI	CACNNNNGTG	1 cut(s)	1066
PagI	TCATGA	1 cut(s)	949
PcsI	WCGNNNNNNNCGW	1 cut(s)	1213
PctI	GAATGC	1 cut(s)	1494
PfeI	GAWTC	6 cut(s)	39, 242, 317, 770, 794, 864
PkrI	GCNGC	3 cut(s)	328, 687, 1118
PleI	GAGTC	1 cut(s)	844
PpsI	GAGTC	1 cut(s)	844
Ppu21I	YACGTR	1 cut(s)	1208
PshAI	GACNNNNGTC	1 cut(s)	1473
PshBI	ATTAAT	1 cut(s)	1098
PsiI	TTATAA	1 cut(s)	1080
Psp6I	CCWGG	2 cut(s)	1172, 1489
PspFI	CCCAGC	2 cut(s)	296, 1091
PspGI	CCWGG	2 cut(s)	1172, 1489
PspN4I	GGNNCC	2 cut(s)	330, 831
PstI	CTGCAG	1 cut(s)	1475
PsuI	RGATCY	1 cut(s)	829
RsaI	GTAC	2 cut(s)	596, 916
RsaNI	GTAC	2 cut(s)	595, 915
RseI	CAYNNNNRTG	3 cut(s)	812, 1024, 1066
SaqAI	TTAA	6 cut(s)	200, 227, 312, 633, 812, 1098
SatI	GCNGC	3 cut(s)	327, 686, 1117
Sau3AI	GATC	3 cut(s)	105, 829, 1009
SchI	GAGTC	1 cut(s)	844
ScrFI	CCNGG	2 cut(s)	1174, 1491
SfaNI	GCATC	2 cut(s)	717, 991
SfcI	CTRYAG	2 cut(s)	1146, 1471
SmiMI	CAYNNNNRTG	3 cut(s)	812, 1024, 1066
SmlI	CTYRAG	3 cut(s)	439, 991, 1304
SmoI	CTYRAG	3 cut(s)	439, 991, 1304
SpeI	ACTAGT	1 cut(s)	754
SsiI	CCGC	5 cut(s)	183, 326, 351, 1116, 1275
SspI	AATATT	1 cut(s)	926
SspMI	CTAG	3 cut(s)	755, 1023, 1326
StyD4I	CCNGG	2 cut(s)	1172, 1489
StyI	CCWWGG	2 cut(s)	707, 1130
TaaI	ACNGT	3 cut(s)	190, 890, 919
TaiI	ACGT	2 cut(s)	1210, 1313
TaqI	TCGA	1 cut(s)	797
TatI	WGTACW	2 cut(s)	594, 914
TauI	GCSGC	2 cut(s)	329, 1119
TfiI	GAWTC	6 cut(s)	39, 242, 317, 770, 794, 864
Tru1I	TTAA	6 cut(s)	200, 227, 312, 633, 812, 1098
Tru9I	TTAA	6 cut(s)	200, 227, 312, 633, 812, 1098
TscAI	CASTG	3 cut(s)	30, 217, 1063
TseI	GCWGC	1 cut(s)	685
TspGWI	ACGGA	1 cut(s)	1217
TspRI	CASTG	3 cut(s)	30, 217, 1063
VspI	ATTAAT	1 cut(s)	1098
XapI	RAATTY	4 cut(s)	501, 702, 1267, 1409
XbaI	TCTAGA	1 cut(s)	1022
XceI	RCATGY	1 cut(s)	811
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XspI	CTAG	3 cut(s)	755, 1023, 1326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.