RchiOBHm_Chr4g0407051

Protein trichome birefringence-like 6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0010279
Physical Location & Seq
Reverse (-)
29135761 .. 29136569
809 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37832

Sequence Viewer

Length: 330 bp
ATGGGTTTTCACTTCTTGTTCTTTTGGCAAAATAATCTACCAGTAATTGTAAATCTGCTAGTAATTGTAAATCTGCTAGTTTCTTCTCGTTTCGATGGTTTTGATTTCAAGGCAACAAATATGCTAGAGCTAATAAGAGGGAAGAGACTAGTTTTTGTGGGTGATTCAATCAACAGAAATCAATGGGAATCCATGTTGTGCATGTTAATGGGAGCAATAAAAGATCTAAACAAGGTCTATGAGACTCACAGGCACAGAATCACCAAAGAAAAGGGAAATTACAGTTTTAGATTTGTGTTAATTCTACTTATCACAAGATTACAAGTGTAG

Protein Analysis

109

Amino Acids

12.89

Weight (kDa)

10.0

Isoelectric Point (pI)

23.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PC-Esterase PF13839 36 - 98 2.6e-19 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 109, 168
AhlI ACTAGT 1 cut(s) 148
AluBI AGCT 1 cut(s) 130
AluI AGCT 1 cut(s) 130
Alw26I GTCTC 2 cut(s) 139, 236
AsuHPI GGTGA 2 cut(s) 173, 253
BccI CCATC 1 cut(s) 89
BcoDI GTCTC 2 cut(s) 139, 236
BcuI ACTAGT 1 cut(s) 148
BfaI CTAG 4 cut(s) 59, 77, 125, 149
BglII AGATCT 1 cut(s) 223
Bse1I ACTGG 1 cut(s) 41
BseNI ACTGG 1 cut(s) 41
BsmAI GTCTC 2 cut(s) 139, 236
Bsp143I GATC 1 cut(s) 223
BsrI ACTGG 1 cut(s) 41
BssMI GATC 1 cut(s) 223
Bst4CI ACNGT 1 cut(s) 284
Bst6I CTCTTC 1 cut(s) 137
BstKTI GATC 1 cut(s) 226
BstMAI GTCTC 2 cut(s) 139, 236
BstMBI GATC 1 cut(s) 223
BstNSI RCATGY 1 cut(s) 205
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
CviAII CATG 2 cut(s) 193, 202
CviJI RGCY 1 cut(s) 130
CviKI_1 RGCY 1 cut(s) 130
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
Eam1104I CTCTTC 1 cut(s) 137
EarI CTCTTC 1 cut(s) 137
FaeI CATG 2 cut(s) 196, 205
FaiI YATR 4 cut(s) 122, 194, 203, 240
FatI CATG 2 cut(s) 192, 201
FspBI CTAG 4 cut(s) 59, 77, 125, 149
Hin1II CATG 2 cut(s) 196, 205
HinfI GANTC 4 cut(s) 164, 188, 244, 258
HphI GGTGA 2 cut(s) 173, 253
HpyCH4III ACNGT 1 cut(s) 284
HpyCH4V TGCA 1 cut(s) 201
Hsp92II CATG 2 cut(s) 196, 205
Kzo9I GATC 1 cut(s) 223
LmnI GCTCC 1 cut(s) 212
LpnPI CCDG 2 cut(s) 54, 235
MaeI CTAG 4 cut(s) 59, 77, 125, 149
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MboII GAAGA 2 cut(s) 75, 154
MflI RGATCY 1 cut(s) 223
MluCI AATT 4 cut(s) 45, 63, 277, 300
MlyI GAGTC 1 cut(s) 238
MnlI CCTC 1 cut(s) 131
MseI TTAA 2 cut(s) 206, 299
MslI CAYNNNNRTG 1 cut(s) 206
NdeII GATC 1 cut(s) 223
NlaIII CATG 2 cut(s) 196, 205
NspI RCATGY 1 cut(s) 205
PfeI GAWTC 3 cut(s) 164, 188, 258
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
PsuI RGATCY 1 cut(s) 223
RseI CAYNNNNRTG 1 cut(s) 206
SaqAI TTAA 2 cut(s) 206, 299
Sau3AI GATC 1 cut(s) 223
SchI GAGTC 1 cut(s) 238
SetI ASST 2 cut(s) 132, 237
SmiMI CAYNNNNRTG 1 cut(s) 206
SpeI ACTAGT 1 cut(s) 148
Sse9I AATT 4 cut(s) 45, 63, 277, 300
SspMI CTAG 4 cut(s) 59, 77, 125, 149
TaaI ACNGT 1 cut(s) 284
TaqI TCGA 1 cut(s) 93
TasI AATT 4 cut(s) 45, 63, 277, 300
TfiI GAWTC 3 cut(s) 164, 188, 258
Tru1I TTAA 2 cut(s) 206, 299
Tru9I TTAA 2 cut(s) 206, 299
XceI RCATGY 1 cut(s) 205
XspI CTAG 4 cut(s) 59, 77, 125, 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.