Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0010279

Physical Location & Seq

Genomic Coordinates Reverse (-)

69423578 .. 69425947

Gene Structure 2370 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG514500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGAGAGGCAGAGAAGCTTCTCACTGAAACCCACCAGATTCTTGGTTTTCTCTTTCACAATCTTTTCCTCTTTCATCTTCCTCACTTTCTTCACCACTTGGCTAATCAAAGCCACCCCTTCAGTTCCCCAACAAGTCCATCTCCAGTTCAACAAGTCTTCATTCGTTTTGGGTTTCAGACCCATAACTGTTCAGTCCTTAACTGGTTTCAGTGGAAACTTACCCTTAAATGGTCTCAAAGATTCAATCTTGAAGACCACCCATTTGAGCAAACCTGAAAATGCTTCTGGGTCTGATGGGATTTCACTTCTTAATGAATCCAGAGTGGCACCACATGAAGAAGAGAGAGGCGGTGGTGGGTTGGATGGTAATTTCACAGCATTGGCACAAGTAGAGCAACCAGTGAGAGCAGAGGAAGTGGAAAAGATTGATTTAGTCTCAAGCAGTAGTAAGAAGATTGAAGAGAACAAGACTGAAGCAACTGCATTTGAAAAGATTGAAATTTCAAGAAGTGGGAAGGTTGAAGATAAGAGAAAAATTGGGGGATGTGATTTTACTAGAGGGAAGTGGGTTTATGATGAGAGCTATCCTTTGTACACAAATGGTTCGTGTCCTTTCATAGATGAAGGCTTTAATTGTCAGGGCAATGGGAGAGTAGATAAAGACTACATGAAGTGGAGATGGCAACCCCAAGATTGTGAAATTCCAAGGTTCAATGCAACAAAGGTGCTGGAGCTAATAAGAGGGAAGAGACTAGTTTTTGTGGGTGACTCAATCAACAGAAATCAATGGGAATCCATGCTGTGCATGTTAATGGGAGCAATAAAGGATCCAAACAAGGTCTATGAGACTCACAGGCGCAGAATCACCAAAGGAAAGGGAAATTACAGTTTCAGATTTGTGGATTACAAGTGTACTGTTGAATATTATGTGAGCCATTTCTTAGTTCATGAAAGCAAGGCAAGAGTAGGGCAGAAGAGGAAGCAAATCTTGAGAATTGATGCAATTGATCATGGCTCATCTAGATGGAGAGGAGCTGATATTTTGATATTCAACACTGCACATTGGTGGTCTCATTATAAAACTAAAGCTGGGTCAGTCCCTTTTTTGATCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

372

Amino Acids

42.62

Weight (kDa)

9.38

Isoelectric Point (pI)

47.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	182 - 234	2e-24	PMR5 N terminal Domain
PC-Esterase	PF13839	235 - 362	1.6e-42	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62390 AT3G62390
fragaria_vesca	FvH4_5g39120 FvH4_5g39120 FvH4_5g39120
malus_domestica	MD03G1294400.v1.1
prunus_persica	Prupe.8G266500_v2.0.a1
pyrus_communis	pycom03g23280
rosa_chinensis	RchiOBHm_Chr4g0407051 RchiOBHm_Chr5g0073791 RchiOBHm_Chr7g0241111
rosa_laevigata	RLG00000000596
rosa_multiflora	Rmu_sc0003187.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219260
rosa_rugosa	Rorug07G0342400 Rorug07G0342500
rosa_samantha	Rh7AG497600 Rh7BG468400 Rh7CG514500 Rh7DG481600
rosa_wichuraiana	Rw7G041980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1080
AccB1I	GGYRCC	1 cut(s)	328
AciI	CCGC	1 cut(s)	351
AclWI	GGATC	2 cut(s)	824, 837
AcsI	RAATTY	2 cut(s)	501, 702
AcuI	CTGAAG	2 cut(s)	105, 495
AfaI	GTAC	2 cut(s)	596, 916
AfiI	CCNNNNNNNGG	1 cut(s)	230
AhlI	ACTAGT	1 cut(s)	754
AleI	CACNNNNGTG	1 cut(s)	1066
AluBI	AGCT	5 cut(s)	18, 585, 736, 1037, 1091
AluI	AGCT	5 cut(s)	18, 585, 736, 1037, 1091
Alw26I	GTCTC	5 cut(s)	239, 442, 745, 842, 1077
AlwI	GGATC	2 cut(s)	824, 837
ApoI	RAATTY	2 cut(s)	501, 702
ArsI	GACNNNNNNTTYG	2 cut(s)	247, 279
AspLEI	GCGC	1 cut(s)	861
AsuHPI	GGTGA	3 cut(s)	85, 779, 859
BamHI	GGATCC	1 cut(s)	829
BanI	GGYRCC	1 cut(s)	328
BbsI	GAAGAC	2 cut(s)	150, 260
BccI	CCATC	5 cut(s)	147, 290, 359, 675, 1020
BclI	TGATCA	1 cut(s)	1009
BcoDI	GTCTC	5 cut(s)	239, 442, 745, 842, 1077
BcuI	ACTAGT	1 cut(s)	754
BfaI	CTAG	3 cut(s)	558, 755, 1023
BmiI	GGNNCC	2 cut(s)	330, 831
BmsI	GCATC	1 cut(s)	991
BpiI	GAAGAC	2 cut(s)	150, 260
BpmI	CTGGAG	2 cut(s)	128, 752
BpuEI	CTTGAG	2 cut(s)	424, 1012
BsaI	GGTCTC	2 cut(s)	239, 1077
BsaJI	CCNNGG	1 cut(s)	707
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse1I	ACTGG	3 cut(s)	145, 208, 401
Bse3DI	GCAATG	1 cut(s)	652
BseDI	CCNNGG	1 cut(s)	707
BseGI	GGATG	2 cut(s)	370, 551
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseMI	GCAATG	1 cut(s)	652
BseNI	ACTGG	3 cut(s)	145, 208, 401
BseRI	GAGGAG	1 cut(s)	1047
BseYI	CCCAGC	1 cut(s)	1091
BsgI	GTGCAG	1 cut(s)	1044
BshNI	GGYRCC	1 cut(s)	328
BslFI	GGGAC	1 cut(s)	1085
BslI	CCNNNNNNNGG	1 cut(s)	230
BsmAI	GTCTC	5 cut(s)	239, 442, 745, 842, 1077
BsmFI	GGGAC	1 cut(s)	1085
Bso31I	GGTCTC	2 cut(s)	239, 1077
Bsp1407I	TGTACA	1 cut(s)	594
Bsp143I	GATC	3 cut(s)	829, 1009, 1110
BspACI	CCGC	1 cut(s)	351
BspHI	TCATGA	1 cut(s)	949
BspLI	GGNNCC	2 cut(s)	330, 831
BspPI	GGATC	2 cut(s)	824, 837
BspT107I	GGYRCC	1 cut(s)	328
BspTNI	GGTCTC	2 cut(s)	239, 1077
BsrDI	GCAATG	1 cut(s)	652
BsrGI	TGTACA	1 cut(s)	594
BsrI	ACTGG	3 cut(s)	145, 208, 401
BssECI	CCNNGG	1 cut(s)	707
BssMI	GATC	3 cut(s)	829, 1009, 1110
BssT1I	CCWWGG	1 cut(s)	707
Bst4CI	ACNGT	3 cut(s)	190, 890, 919
Bst6I	CTCTTC	4 cut(s)	336, 456, 743, 971
BstAUI	TGTACA	1 cut(s)	594
BstDEI	CTNAG	1 cut(s)	943
BstF5I	GGATG	2 cut(s)	370, 551
BstHHI	GCGC	1 cut(s)	861
BstKTI	GATC	3 cut(s)	832, 1012, 1113
BstMAI	GTCTC	5 cut(s)	239, 442, 745, 842, 1077
BstMBI	GATC	3 cut(s)	829, 1009, 1110
BstNSI	RCATGY	1 cut(s)	811
BstV2I	GAAGAC	2 cut(s)	150, 260
BstX2I	RGATCY	1 cut(s)	829
BstXI	CCANNNNNNTGG	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	829
BtsCI	GGATG	2 cut(s)	370, 551
BtsI	GCAGTG	1 cut(s)	1056
BtsIMutI	CAGTG	4 cut(s)	23, 217, 408, 1056
CciI	TCATGA	1 cut(s)	949
CfoI	GCGC	1 cut(s)	861
Csp6I	GTAC	2 cut(s)	595, 915
CviAII	CATG	6 cut(s)	335, 670, 799, 808, 950, 1013
CviQI	GTAC	2 cut(s)	595, 915
DdeI	CTNAG	1 cut(s)	943
DpnI	GATC	3 cut(s)	831, 1011, 1112
DpnII	GATC	3 cut(s)	829, 1009, 1110
Eam1104I	CTCTTC	4 cut(s)	336, 456, 743, 971
EarI	CTCTTC	4 cut(s)	336, 456, 743, 971
Eco130I	CCWWGG	1 cut(s)	707
Eco31I	GGTCTC	2 cut(s)	239, 1077
Eco57I	CTGAAG	2 cut(s)	105, 495
EcoT14I	CCWWGG	1 cut(s)	707
ErhI	CCWWGG	1 cut(s)	707
FaeI	CATG	6 cut(s)	338, 673, 802, 811, 953, 1016
FalI	AAGNNNNNCTT	2 cut(s)	974, 1006
FaqI	GGGAC	1 cut(s)	1085
FatI	CATG	6 cut(s)	334, 669, 798, 807, 949, 1012
FbaI	TGATCA	1 cut(s)	1009
FokI	GGATG	2 cut(s)	377, 558
FspBI	CTAG	3 cut(s)	558, 755, 1023
GlaI	GCGC	1 cut(s)	860
GsaI	CCCAGC	1 cut(s)	1095
GsuI	CTGGAG	2 cut(s)	128, 752
HhaI	GCGC	1 cut(s)	861
Hin1II	CATG	6 cut(s)	338, 673, 802, 811, 953, 1016
Hin6I	GCGC	1 cut(s)	859
HinP1I	GCGC	1 cut(s)	859
HindIII	AAGCTT	1 cut(s)	16
HinfI	GANTC	7 cut(s)	39, 242, 317, 770, 794, 850, 864
HphI	GGTGA	3 cut(s)	85, 779, 859
Hpy166II	GTNNAC	2 cut(s)	597, 915
Hpy188I	TCNGA	3 cut(s)	179, 295, 896
Hpy188III	TCNNGA	6 cut(s)	250, 321, 507, 950, 991, 1023
Hpy8I	GTNNAC	2 cut(s)	597, 915
HpyAV	CCTTC	3 cut(s)	129, 511, 620
HpyCH4III	ACNGT	3 cut(s)	190, 890, 919
HpyCH4V	TGCA	5 cut(s)	485, 719, 807, 1004, 1061
HpyF3I	CTNAG	1 cut(s)	943
Hsp92II	CATG	6 cut(s)	338, 673, 802, 811, 953, 1016
HspAI	GCGC	1 cut(s)	859
Ksp22I	TGATCA	1 cut(s)	1009
Kzo9I	GATC	3 cut(s)	829, 1009, 1110
LmnI	GCTCC	3 cut(s)	733, 818, 1034
LweI	GCATC	1 cut(s)	991
MaeI	CTAG	3 cut(s)	558, 755, 1023
MaeIII	GTNAC	1 cut(s)	767
MalI	GATC	3 cut(s)	831, 1011, 1112
MboI	GATC	3 cut(s)	829, 1009, 1110
MfeI	CAATTG	1 cut(s)	1005
MflI	RGATCY	1 cut(s)	829
MluCI	AATT	8 cut(s)	370, 501, 537, 634, 702, 883, 996, 1005
MlyI	GAGTC	2 cut(s)	764, 844
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	8 cut(s)	79, 92, 341, 406, 554, 737, 972, 1025
MseI	TTAA	6 cut(s)	200, 227, 312, 633, 812, 1117
MslI	CAYNNNNRTG	3 cut(s)	812, 1024, 1066
MunI	CAATTG	1 cut(s)	1005
NdeII	GATC	3 cut(s)	829, 1009, 1110
NlaIII	CATG	6 cut(s)	338, 673, 802, 811, 953, 1016
NlaIV	GGNNCC	2 cut(s)	330, 831
NmuCI	GTSAC	1 cut(s)	767
NspI	RCATGY	1 cut(s)	811
OliI	CACNNNNGTG	1 cut(s)	1066
PagI	TCATGA	1 cut(s)	949
PfeI	GAWTC	5 cut(s)	39, 242, 317, 794, 864
PleI	GAGTC	2 cut(s)	764, 844
PpsI	GAGTC	2 cut(s)	764, 844
PsiI	TTATAA	1 cut(s)	1080
PspFI	CCCAGC	1 cut(s)	1091
PspN4I	GGNNCC	2 cut(s)	330, 831
PsuI	RGATCY	1 cut(s)	829
RsaI	GTAC	2 cut(s)	596, 916
RsaNI	GTAC	2 cut(s)	595, 915
RseI	CAYNNNNRTG	3 cut(s)	812, 1024, 1066
SaqAI	TTAA	6 cut(s)	200, 227, 312, 633, 812, 1117
Sau3AI	GATC	3 cut(s)	829, 1009, 1110
SchI	GAGTC	2 cut(s)	764, 844
SfaNI	GCATC	1 cut(s)	991
SmiMI	CAYNNNNRTG	3 cut(s)	812, 1024, 1066
SmlI	CTYRAG	2 cut(s)	439, 991
SmoI	CTYRAG	2 cut(s)	439, 991
SpeI	ACTAGT	1 cut(s)	754
Sse9I	AATT	8 cut(s)	370, 501, 537, 634, 702, 883, 996, 1005
SsiI	CCGC	1 cut(s)	351
SspI	AATATT	1 cut(s)	926
SspMI	CTAG	3 cut(s)	558, 755, 1023
StyI	CCWWGG	1 cut(s)	707
TaaI	ACNGT	3 cut(s)	190, 890, 919
TasI	AATT	8 cut(s)	370, 501, 537, 634, 702, 883, 996, 1005
TatI	WGTACW	2 cut(s)	594, 914
TfiI	GAWTC	5 cut(s)	39, 242, 317, 794, 864
Tru1I	TTAA	6 cut(s)	200, 227, 312, 633, 812, 1117
Tru9I	TTAA	6 cut(s)	200, 227, 312, 633, 812, 1117
TscAI	CASTG	4 cut(s)	30, 217, 408, 1063
TseFI	GTSAC	1 cut(s)	767
Tsp45I	GTSAC	1 cut(s)	767
TspDTI	ATGAA	9 cut(s)	64, 150, 330, 351, 607, 639, 686, 938, 966
TspRI	CASTG	4 cut(s)	30, 217, 408, 1063
XapI	RAATTY	2 cut(s)	501, 702
XbaI	TCTAGA	1 cut(s)	1022
XceI	RCATGY	1 cut(s)	811
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XspI	CTAG	3 cut(s)	558, 755, 1023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.