Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010279

Physical Location & Seq

Genomic Coordinates Reverse (-)

22285841 .. 22287983

Gene Structure 2143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G266500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1599 bp

ATGGAGAGGCAGAGAAGTTTCTCCTTCAAACCCACTAGATTCTTAGTATTTTCTTTTACCATCTCTTCCTCTGTCATCTTTCTCACTTTCTTTACCATGTGGATCATCAAAACAACTCCTTCAGTACCCCAAGAAACCCGTCTCCAGTTCAACACATCCTCACTCGTTTTGGGTTTCAAACCCATAGCTGTTCACACATTGACTGGGTTCAGTAGGAATTTTTCAGTAAATGGTCTTAAAGATTCGATCTTGAAGGGTACCCGTTTGAGCAAACCTGAAAATGCTTCTGGGTTTTCTGGGATTTCACTTATTAGTGGGTTACAGTTACAGAGGAAGGAGAACGAATCCCAAGTGCCAGAACACGAAGAGGAAAAAGGCGGTGAGTCTGATGGTAATTTCCCACCAATTGAACACAGTGCACCTACTACAATCCTATTTGTGAACATTGAGAGGACTGAAGAGAAAAATGCTGCATTGAATAAGACTGAAGTCACAAGTAAAAAGAGGATTGATGAGAAGAAGACTAGAAAAACTTCATTTGAAAATACTCAAATTTCAAGTGGCGGGCAGGTTGAGAACAAGAGAGTGAGAGGATGCGATTTTACCAGAGGGAGGTGGGTCTACGATGAGAGCTATCCTTTGTACACAAATGATTCCTGTCCCTTCATAGATGAAGGTTTTAATTGTCAGGGTAATGGAAGATTAGATAAAGACTACATGAAGTTGAGATGGCAACCACAAGATTGTGACATTCCAAGGTTTAATGCAACAAAAATGCTGGAACTGATCAGAGGGAAAAGACTAGTTTTTGTGGGCGATTCAATCAATAGGAATCAATGGGAATCCATGCTGTGCATGTTAATGGGAGCTATCAAAGATCCAAATAGGGTCTATGAGACGCATAGGCGCAGAATCACCAAAGAGAAGGGGGATTACAGTTTCAAATTTGTGGATTACAAGTGTACAGTTGAATATTATGTGTCCCATTTCTTGGTTCATGAAGGCAAGGCAAGAGTAGGGCAGAAGCGGGTGCAAACTTTGCGAATTGATTCCATTGATCACGGCTCATCTAGATGGAGAGGAGCTGATATTTTGGTATTCAACACCGCACATTGGTGGTCTCATTACAAAACTAAAGCTGGGATTAATTACTATCAGGAAGGGGGCCAAATTCATCCACAGCTTGATGTTTCCACAGCTTTCAGAAAAGCTTTGATGACCTGGGCATCATGGGTTGATAAACGCATCAATCCACGCAAAACCCAAGTTTTCTTTCGAAGTTCAGCACCATCCCATTTCAGGGGAGGTCAATGGAATTCAGGCGGGAGTTGTAAAGAAGCAACTCAACCGCTTCAAACTTCAAGCTTCTCTTATTCTGAGAAAAATGTAATTGCAGAGGAGGTCATAAAGCAGATGAAAACTCGTGTGACTTTCTTGAACATAACTGGCTTGTCAGAATATAGAATTGATGGTCATCCATCTATATATGGAAGAAAATCAGGGAAACACTCCTCTTCAGGCATTCAAGATTGCAGTCATTGGTGTCTTCCTGGCATTCCTGATCTCTGGAATGAATTGTTGTATGCTCATTTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

533

Amino Acids

61.09

Weight (kDa)

9.43

Isoelectric Point (pI)

44.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62390 AT3G62390
fragaria_vesca	FvH4_5g39120 FvH4_5g39120 FvH4_5g39120
malus_domestica	MD03G1294400.v1.1
prunus_persica	Prupe.8G266500_v2.0.a1
pyrus_communis	pycom03g23280
rosa_chinensis	RchiOBHm_Chr4g0407051 RchiOBHm_Chr5g0073791 RchiOBHm_Chr7g0241111
rosa_laevigata	RLG00000000596
rosa_multiflora	Rmu_sc0003187.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219260
rosa_rugosa	Rorug07G0342400 Rorug07G0342500
rosa_samantha	Rh7AG497600 Rh7BG468400 Rh7CG514500 Rh7DG481600
rosa_wichuraiana	Rw7G041980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	559
Acc65I	GGTACC	1 cut(s)	257
AccB1I	GGYRCC	1 cut(s)	257
AccB7I	CCANNNNNTGG	1 cut(s)	991
AccI	GTMKAC	1 cut(s)	621
AciI	CCGC	6 cut(s)	378, 564, 1027, 1107, 1323, 1349
AclWI	GGATC	2 cut(s)	110, 872
AcsI	RAATTY	5 cut(s)	217, 552, 944, 1170, 1315
AcuI	CTGAAG	4 cut(s)	105, 477, 507, 1500
AfaI	GTAC	4 cut(s)	126, 259, 644, 964
AfiI	CCNNNNNNNGG	5 cut(s)	612, 991, 1113, 1299, 1300
AhlI	ACTAGT	1 cut(s)	802
AjnI	CCWGG	2 cut(s)	1220, 1549
AjuI	GAANNNNNNNTTGG	2 cut(s)	1257, 1289
AleI	CACNNNNGTG	1 cut(s)	1114
AluBI	AGCT	9 cut(s)	188, 633, 869, 1085, 1139, 1183, 1199, 1211, 1365
AluI	AGCT	9 cut(s)	188, 633, 869, 1085, 1139, 1183, 1199, 1211, 1365
Alw21I	GWGCWC	1 cut(s)	421
Alw26I	GTCTC	3 cut(s)	146, 890, 1125
Alw44I	GTGCAC	1 cut(s)	417
AlwI	GGATC	2 cut(s)	110, 872
AoxI	GGCC	1 cut(s)	1165
ApaLI	GTGCAC	1 cut(s)	417
ApeKI	GCWGC	1 cut(s)	470
ApoI	RAATTY	5 cut(s)	217, 552, 944, 1170, 1315
AseI	ATTAAT	1 cut(s)	1146
Asp700I	GAANNNNTTC	2 cut(s)	532, 1048
Asp718I	GGTACC	1 cut(s)	257
AspLEI	GCGC	1 cut(s)	909
AspS9I	GGNCC	1 cut(s)	1165
AsuHPI	GGTGA	2 cut(s)	392, 907
AsuII	TTCGAA	1 cut(s)	1276
BaeGI	GKGCMC	1 cut(s)	421
BanI	GGYRCC	1 cut(s)	257
BarI	GAAGNNNNNNTAC	2 cut(s)	917, 949
BauI	CACGAG	1 cut(s)	1422
BbsI	GAAGAC	2 cut(s)	527, 1538
Bbv12I	GWGCWC	1 cut(s)	421
BbvI	GCAGC	1 cut(s)	457
BccI	CCATC	7 cut(s)	68, 383, 723, 1068, 1297, 1463, 1486
BceAI	ACGGC	1 cut(s)	1078
BciT130I	CCWGG	2 cut(s)	1222, 1551
BclI	TGATCA	2 cut(s)	786, 1057
BcoDI	GTCTC	3 cut(s)	146, 890, 1125
BcuI	ACTAGT	1 cut(s)	802
BfaI	CTAG	4 cut(s)	36, 525, 803, 1071
BfuAI	ACCTGC	1 cut(s)	559
BisI	GCNGC	1 cut(s)	471
BlsI	GCNGC	1 cut(s)	472
Bme1390I	CCNGG	2 cut(s)	1222, 1551
BmgT120I	GGNCC	1 cut(s)	1165
BmiI	GGNNCC	2 cut(s)	259, 1166
BmrFI	CCNGG	2 cut(s)	1222, 1551
BmrI	ACTGGG	1 cut(s)	213
BmsI	GCATC	3 cut(s)	584, 1235, 1254
BmuI	ACTGGG	1 cut(s)	213
BoxI	GACNNNNGTC	1 cut(s)	488
BpiI	GAAGAC	2 cut(s)	527, 1538
BpmI	CTGGAG	1 cut(s)	128
Bpu14I	TTCGAA	1 cut(s)	1276
BsaBI	GATNNNNATC	1 cut(s)	1473
BsaI	GGTCTC	1 cut(s)	1125
BsaJI	CCNNGG	2 cut(s)	755, 1221
Bsc4I	CCNNNNNNNGG	5 cut(s)	612, 991, 1113, 1299, 1300
Bse1I	ACTGG	3 cut(s)	145, 208, 1450
Bse8I	GATNNNNATC	1 cut(s)	1473
BseBI	CCWGG	2 cut(s)	1222, 1551
BseDI	CCNNGG	2 cut(s)	755, 1221
BseGI	GGATG	5 cut(s)	155, 599, 1174, 1289, 1474
BseJI	GATNNNNATC	1 cut(s)	1473
BseLI	CCNNNNNNNGG	5 cut(s)	612, 991, 1113, 1299, 1300
BseMII	CTCAG	1 cut(s)	1368
BseNI	ACTGG	3 cut(s)	145, 208, 1450
BseRI	GAGGAG	3 cut(s)	1095, 1412, 1501
BseSI	GKGCMC	1 cut(s)	421
BseXI	GCAGC	1 cut(s)	457
BseYI	CCCAGC	1 cut(s)	1139
BshFI	GGCC	1 cut(s)	1167
BshNI	GGYRCC	1 cut(s)	257
BsiHKAI	GWGCWC	1 cut(s)	421
BslFI	GGGAC	2 cut(s)	645, 967
BslI	CCNNNNNNNGG	5 cut(s)	612, 991, 1113, 1299, 1300
BsmAI	GTCTC	3 cut(s)	146, 890, 1125
BsmBI	CGTCTC	2 cut(s)	146, 890
BsmFI	GGGAC	2 cut(s)	645, 967
BsmI	GAATGC	2 cut(s)	1521, 1554
BsnI	GGCC	1 cut(s)	1167
Bso31I	GGTCTC	1 cut(s)	1125
Bsp119I	TTCGAA	1 cut(s)	1276
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp1407I	TGTACA	2 cut(s)	642, 962
Bsp143I	GATC	6 cut(s)	102, 246, 786, 877, 1057, 1561
BspACI	CCGC	6 cut(s)	378, 564, 1027, 1107, 1323, 1349
BspANI	GGCC	1 cut(s)	1167
BspCNI	CTCAG	1 cut(s)	1369
BspHI	TCATGA	1 cut(s)	997
BspLI	GGNNCC	2 cut(s)	259, 1166
BspMI	ACCTGC	1 cut(s)	559
BspPI	GGATC	2 cut(s)	110, 872
BspT104I	TTCGAA	1 cut(s)	1276
BspT107I	GGYRCC	1 cut(s)	257
BspTNI	GGTCTC	1 cut(s)	1125
BsrGI	TGTACA	2 cut(s)	642, 962
BsrI	ACTGG	3 cut(s)	145, 208, 1450
BssECI	CCNNGG	2 cut(s)	755, 1221
BssMI	GATC	6 cut(s)	102, 246, 786, 877, 1057, 1561
BssSI	CACGAG	1 cut(s)	1422
BssT1I	CCWWGG	1 cut(s)	755
Bst2BI	CACGAG	1 cut(s)	1422
Bst2UI	CCWGG	2 cut(s)	1222, 1551
Bst4CI	ACNGT	4 cut(s)	324, 416, 938, 967
Bst6I	CTCTTC	4 cut(s)	70, 360, 453, 1519
BstAPI	GCANNNNNTGC	1 cut(s)	1039
BstAUI	TGTACA	2 cut(s)	642, 962
BstBI	TTCGAA	1 cut(s)	1276
BstC8I	GCNNGC	1 cut(s)	566
BstDEI	CTNAG	2 cut(s)	43, 1377
BstF5I	GGATG	5 cut(s)	155, 599, 1174, 1289, 1474
BstHHI	GCGC	1 cut(s)	909
BstKTI	GATC	6 cut(s)	105, 249, 789, 880, 1060, 1564
BstMAI	GTCTC	3 cut(s)	146, 890, 1125
BstMBI	GATC	6 cut(s)	102, 246, 786, 877, 1057, 1561
BstMWI	GCNNNNNNNGC	1 cut(s)	1039
BstNI	CCWGG	2 cut(s)	1222, 1551
BstNSI	RCATGY	1 cut(s)	859
BstPAI	GACNNNNGTC	1 cut(s)	488
BstSCI	CCNGG	2 cut(s)	1220, 1549
BstSLI	GKGCMC	1 cut(s)	421
BstV1I	GCAGC	1 cut(s)	457
BstV2I	GAAGAC	2 cut(s)	527, 1538
BstX2I	RGATCY	1 cut(s)	877
BstYI	RGATCY	1 cut(s)	877
BsuRI	GGCC	1 cut(s)	1167
BtsCI	GGATG	5 cut(s)	155, 599, 1174, 1289, 1474
BtsIMutI	CAGTG	1 cut(s)	421
BveI	ACCTGC	1 cut(s)	559
Cac8I	GCNNGC	1 cut(s)	566
CciI	TCATGA	1 cut(s)	997
CfoI	GCGC	1 cut(s)	909
Cfr13I	GGNCC	1 cut(s)	1165
CseI	GACGC	1 cut(s)	907
Csp6I	GTAC	4 cut(s)	125, 258, 643, 963
CviAII	CATG	6 cut(s)	97, 718, 847, 856, 998, 1230
CviQI	GTAC	4 cut(s)	125, 258, 643, 963
DdeI	CTNAG	2 cut(s)	43, 1377
DpnI	GATC	6 cut(s)	104, 248, 788, 879, 1059, 1563
DpnII	GATC	6 cut(s)	102, 246, 786, 877, 1057, 1561
Eam1104I	CTCTTC	4 cut(s)	70, 360, 453, 1519
EarI	CTCTTC	4 cut(s)	70, 360, 453, 1519
Eco130I	CCWWGG	1 cut(s)	755
Eco31I	GGTCTC	1 cut(s)	1125
Eco57I	CTGAAG	4 cut(s)	105, 477, 507, 1500
EcoRI	GAATTC	1 cut(s)	1315
EcoRII	CCWGG	2 cut(s)	1220, 1549
EcoT14I	CCWWGG	1 cut(s)	755
ErhI	CCWWGG	1 cut(s)	755
Esp3I	CGTCTC	2 cut(s)	146, 890
FaeI	CATG	6 cut(s)	100, 721, 850, 859, 1001, 1233
FalI	AAGNNNNNCTT	2 cut(s)	1354, 1386
FaqI	GGGAC	2 cut(s)	645, 967
FatI	CATG	6 cut(s)	96, 717, 846, 855, 997, 1229
FauI	CCCGC	3 cut(s)	557, 1020, 1316
FbaI	TGATCA	2 cut(s)	786, 1057
FblI	GTMKAC	1 cut(s)	621
Fnu4HI	GCNGC	1 cut(s)	471
FokI	GGATG	5 cut(s)	142, 606, 1161, 1276, 1461
Fsp4HI	GCNGC	1 cut(s)	471
FspBI	CTAG	4 cut(s)	36, 525, 803, 1071
GlaI	GCGC	1 cut(s)	908
GluI	GCNGC	1 cut(s)	471
GsaI	CCCAGC	1 cut(s)	1143
GsuI	CTGGAG	1 cut(s)	128
HaeIII	GGCC	1 cut(s)	1167
HgaI	GACGC	1 cut(s)	907
HhaI	GCGC	1 cut(s)	909
Hin1II	CATG	6 cut(s)	100, 721, 850, 859, 1001, 1233
Hin6I	GCGC	1 cut(s)	907
HinP1I	GCGC	1 cut(s)	907
HindIII	AAGCTT	2 cut(s)	1209, 1363
HphI	GGTGA	2 cut(s)	392, 907
Hpy166II	GTNNAC	6 cut(s)	193, 419, 442, 622, 645, 963
Hpy188I	TCNGA	5 cut(s)	388, 791, 1205, 1378, 1456
Hpy188III	TCNNGA	8 cut(s)	250, 998, 1071, 1157, 1435, 1526, 1559, 1567
Hpy8I	GTNNAC	6 cut(s)	193, 419, 442, 622, 645, 963
HpyAV	CCTTC	9 cut(s)	34, 129, 247, 328, 668, 673, 919, 995, 1154
HpyCH4III	ACNGT	4 cut(s)	324, 416, 938, 967
HpyCH4V	TGCA	8 cut(s)	419, 473, 767, 855, 1033, 1394, 1533, 1594
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1039
HpyF3I	CTNAG	2 cut(s)	43, 1377
Hsp92II	CATG	6 cut(s)	100, 721, 850, 859, 1001, 1233
HspAI	GCGC	1 cut(s)	907
KpnI	GGTACC	1 cut(s)	261
Ksp22I	TGATCA	2 cut(s)	786, 1057
Kzo9I	GATC	6 cut(s)	102, 246, 786, 877, 1057, 1561
LmnI	GCTCC	2 cut(s)	866, 1082
Lsp1109I	GCAGC	1 cut(s)	457
LweI	GCATC	3 cut(s)	584, 1235, 1254
MaeI	CTAG	4 cut(s)	36, 525, 803, 1071
MaeIII	GTNAC	5 cut(s)	318, 324, 490, 746, 1426
MalI	GATC	6 cut(s)	104, 248, 788, 879, 1059, 1563
MboI	GATC	6 cut(s)	102, 246, 786, 877, 1057, 1561
MboII	GAAGA	9 cut(s)	57, 377, 470, 529, 532, 711, 1503, 1506, 1538
MfeI	CAATTG	1 cut(s)	405
MflI	RGATCY	1 cut(s)	877
MhlI	GDGCHC	1 cut(s)	421
MlyI	GAGTC	1 cut(s)	392
MroXI	GAANNNNTTC	2 cut(s)	532, 1048
MseI	TTAA	5 cut(s)	237, 681, 762, 860, 1146
MslI	CAYNNNNRTG	3 cut(s)	860, 1072, 1114
MspR9I	CCNGG	2 cut(s)	1222, 1551
MunI	CAATTG	1 cut(s)	405
Mva1269I	GAATGC	2 cut(s)	1521, 1554
MvaI	CCWGG	2 cut(s)	1222, 1551
MwoI	GCNNNNNNNGC	1 cut(s)	1039
NdeII	GATC	6 cut(s)	102, 246, 786, 877, 1057, 1561
NlaIII	CATG	6 cut(s)	100, 721, 850, 859, 1001, 1233
NlaIV	GGNNCC	2 cut(s)	259, 1166
NmuCI	GTSAC	3 cut(s)	490, 746, 1426
NspI	RCATGY	1 cut(s)	859
NspV	TTCGAA	1 cut(s)	1276
OliI	CACNNNNGTG	1 cut(s)	1114
PagI	TCATGA	1 cut(s)	997
PctI	GAATGC	2 cut(s)	1521, 1554
PdmI	GAANNNNTTC	2 cut(s)	532, 1048
PfeI	GAWTC	9 cut(s)	39, 242, 344, 653, 818, 832, 842, 912, 1049
PflMI	CCANNNNNTGG	1 cut(s)	991
PkrI	GCNGC	1 cut(s)	472
PleI	GAGTC	1 cut(s)	391
PpsI	GAGTC	1 cut(s)	391
PshAI	GACNNNNGTC	1 cut(s)	488
PshBI	ATTAAT	1 cut(s)	1146
Psp6I	CCWGG	2 cut(s)	1220, 1549
PspFI	CCCAGC	1 cut(s)	1139
PspGI	CCWGG	2 cut(s)	1220, 1549
PspN4I	GGNNCC	2 cut(s)	259, 1166
PspPI	GGNCC	1 cut(s)	1165
PsuI	RGATCY	1 cut(s)	877
RsaI	GTAC	4 cut(s)	126, 259, 644, 964
RsaNI	GTAC	4 cut(s)	125, 258, 643, 963
RseI	CAYNNNNRTG	3 cut(s)	860, 1072, 1114
SaqAI	TTAA	5 cut(s)	237, 681, 762, 860, 1146
SatI	GCNGC	1 cut(s)	471
Sau3AI	GATC	6 cut(s)	102, 246, 786, 877, 1057, 1561
Sau96I	GGNCC	1 cut(s)	1165
SchI	GAGTC	1 cut(s)	392
ScrFI	CCNGG	2 cut(s)	1222, 1551
SduI	GDGCHC	1 cut(s)	421
SfaNI	GCATC	3 cut(s)	584, 1235, 1254
SfuI	TTCGAA	1 cut(s)	1276
SmiMI	CAYNNNNRTG	3 cut(s)	860, 1072, 1114
SpeI	ACTAGT	1 cut(s)	802
SsiI	CCGC	6 cut(s)	378, 564, 1027, 1107, 1323, 1349
SspI	AATATT	1 cut(s)	974
SspMI	CTAG	4 cut(s)	36, 525, 803, 1071
StyD4I	CCNGG	2 cut(s)	1220, 1549
StyI	CCWWGG	1 cut(s)	755
TaaI	ACNGT	4 cut(s)	324, 416, 938, 967
TaqI	TCGA	2 cut(s)	245, 1276
TatI	WGTACW	2 cut(s)	642, 962
TfiI	GAWTC	9 cut(s)	39, 242, 344, 653, 818, 832, 842, 912, 1049
Tru1I	TTAA	5 cut(s)	237, 681, 762, 860, 1146
Tru9I	TTAA	5 cut(s)	237, 681, 762, 860, 1146
TscAI	CASTG	1 cut(s)	421
TseFI	GTSAC	3 cut(s)	490, 746, 1426
TseI	GCWGC	1 cut(s)	470
Tsp45I	GTSAC	3 cut(s)	490, 746, 1426
TspDTI	ATGAA	9 cut(s)	525, 655, 687, 734, 986, 1014, 1163, 1430, 1587
TspRI	CASTG	1 cut(s)	421
Van91I	CCANNNNNTGG	1 cut(s)	991
VneI	GTGCAC	1 cut(s)	417
VspI	ATTAAT	1 cut(s)	1146
XapI	RAATTY	5 cut(s)	217, 552, 944, 1170, 1315
XbaI	TCTAGA	1 cut(s)	1070
XceI	RCATGY	1 cut(s)	859
XmiI	GTMKAC	1 cut(s)	621
XmnI	GAANNNNTTC	2 cut(s)	532, 1048
XspI	CTAG	4 cut(s)	36, 525, 803, 1071

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.