Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003187.1

Orthogroup ID

OG0010279

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2464

Gene Structure 2464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003187.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1432 bp

caaagccaccccttcagttccccaacaagtccatctccagttcaacaagtcctcgttcgttttgggtttcagacccgtaactgttcagtccttaactggtttcagtggaaacttacccttaaatggtcccaaagattcaatcttgaagaccacccatttgagcaaacctgaaaatgcttctgggtctgctgggatttcacttcttaatgaatccaaagcggcaccacgtgaagaagagagaggcggtggtgggttggatggtaatttcacagcattggcacaagtagagaaacctgtgagagcagaggaagtggaaaagattgaattagtctcaagcagtagtaagaagattgaagagaacaagactgaagcaactgcatttgaaaagattgaaatttcaagaagtgggaaggttgaagataagagaaaaaatggagtatgtgattttacaagagggaggtgggtttatgatgagagctatcctttgtacacaaatggttcgtgtcctttgatagatgaaggttttaattgtcagggcaatgggagattagataaagactacatgaagtggagatggcagccccaagattgtgaaattccaaggttcaatgcaacaaagatgctggagctaataagagggaagagactagtttttgtgggtgattcaatcaacagaaatcaatgggaatccatgttgtgcatgttaatgggagcaataaaggatccaaacagggtctatgagactcacaggcgcagaatcaccaaagaaaagggaaattacagtttcagatttgtggattacaagtgtactgttgaatattatgtgagccatttcttagttcatgaaggcaaggcaagagtaggacagaagaggaagcaaatcttgagaattgatgcaattgatcatggttcatctagatggagaggagctgatgttttgatattcaacactgcacattggtggtctcattataaaactaaagctgggattaattactaccaagaaggcggccaagttcatccaaggcttgatgtttctacagctttcagaaaatctttgatgacctgggcttcatgggttgatagatacatcaacccacgtagaacccgagttttctttcgtagttcagcaccatcccatttcaggggaggtcaatggaattcaggcgggagttgtaaggaagctactaaaccacttgagacgtttagtgcttcttctagtgagaaaaatgtgattgcaatggaggtcataaagcagatgaaaactcccatcacattcttgaacataactggattatcagaatttagaatagatggtcatccatctatatatggaagaaaatcagcctcaggcagtcaagactgcagtcattggtgtcttcctggcattcctgatgtgtggaatgaattgttgtatgctcatttgcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

476

Amino Acids

54.05

Weight (kDa)

9.38

Isoelectric Point (pI)

46.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62390 AT3G62390
fragaria_vesca	FvH4_5g39120 FvH4_5g39120 FvH4_5g39120
malus_domestica	MD03G1294400.v1.1
prunus_persica	Prupe.8G266500_v2.0.a1
pyrus_communis	pycom03g23280
rosa_chinensis	RchiOBHm_Chr4g0407051 RchiOBHm_Chr5g0073791 RchiOBHm_Chr7g0241111
rosa_laevigata	RLG00000000596
rosa_multiflora	Rmu_sc0003187.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219260
rosa_rugosa	Rorug07G0342400 Rorug07G0342500
rosa_samantha	Rh7AG497600 Rh7BG468400 Rh7CG514500 Rh7DG481600
rosa_wichuraiana	Rw7G041980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	973
AccB1I	GGYRCC	1 cut(s)	221
AciI	CCGC	4 cut(s)	219, 244, 1009, 1168
AclWI	GGATC	2 cut(s)	717, 730
AcoI	YGGCCR	1 cut(s)	1010
AcsI	RAATTY	4 cut(s)	394, 595, 1160, 1302
AcuI	CTGAAG	1 cut(s)	388
AcvI	CACGTG	1 cut(s)	228
AdeI	CACNNNGTG	1 cut(s)	228
AfaI	GTAC	2 cut(s)	489, 809
AfiI	CCNNNNNNNGG	3 cut(s)	123, 1144, 1145
AhlI	ACTAGT	1 cut(s)	647
AjnI	CCWGG	2 cut(s)	1065, 1382
AleI	CACNNNNGTG	1 cut(s)	959
AluBI	AGCT	6 cut(s)	478, 629, 930, 984, 1044, 1185
AluI	AGCT	6 cut(s)	478, 629, 930, 984, 1044, 1185
Alw26I	GTCTC	5 cut(s)	335, 638, 735, 970, 1194
AlwI	GGATC	2 cut(s)	717, 730
Ama87I	CYCGRG	1 cut(s)	1108
AoxI	GGCC	1 cut(s)	1010
ApeKI	GCWGC	1 cut(s)	578
ApoI	RAATTY	4 cut(s)	394, 595, 1160, 1302
ArsI	GACNNNNNNTTYG	2 cut(s)	140, 172
AseI	ATTAAT	1 cut(s)	991
AspLEI	GCGC	1 cut(s)	754
AspS9I	GGNCC	1 cut(s)	126
AsuHPI	GGTGA	2 cut(s)	672, 752
AvaI	CYCGRG	1 cut(s)	1108
AvaII	GGWCC	1 cut(s)	126
AxyI	CCTNAGG	1 cut(s)	1349
BamHI	GGATCC	1 cut(s)	722
BanI	GGYRCC	1 cut(s)	221
BbrPI	CACGTG	1 cut(s)	228
BbsI	GAAGAC	2 cut(s)	153, 1371
BbvI	GCAGC	1 cut(s)	590
BccI	CCATC	8 cut(s)	40, 252, 568, 913, 1142, 1278, 1308, 1331
BciT130I	CCWGG	2 cut(s)	1067, 1384
BclI	TGATCA	1 cut(s)	902
BcoDI	GTCTC	5 cut(s)	335, 638, 735, 970, 1194
BcuI	ACTAGT	1 cut(s)	647
BfaI	CTAG	3 cut(s)	648, 916, 1219
BfmI	CTRYAG	2 cut(s)	1039, 1364
BisI	GCNGC	3 cut(s)	220, 579, 1010
BlsI	GCNGC	3 cut(s)	221, 580, 1011
Bme1390I	CCNGG	2 cut(s)	1067, 1384
Bme18I	GGWCC	1 cut(s)	126
BmeT110I	CYCGRG	1 cut(s)	1108
BmgT120I	GGNCC	1 cut(s)	126
BmiI	GGNNCC	3 cut(s)	128, 223, 724
BmrFI	CCNGG	2 cut(s)	1067, 1384
BmsI	GCATC	2 cut(s)	610, 884
BoxI	GACNNNNGTC	1 cut(s)	1366
BpiI	GAAGAC	2 cut(s)	153, 1371
BpmI	CTGGAG	2 cut(s)	21, 645
BpuEI	CTTGAG	3 cut(s)	317, 905, 1218
BsaAI	YACGTR	2 cut(s)	228, 1101
BsaBI	GATNNNNATC	1 cut(s)	1318
BsaI	GGTCTC	1 cut(s)	970
BsaJI	CCNNGG	3 cut(s)	600, 1023, 1066
BsaXI	ACNNNNNCTCC	2 cut(s)	919, 949
Bsc4I	CCNNNNNNNGG	3 cut(s)	123, 1144, 1145
Bse1I	ACTGG	3 cut(s)	38, 101, 1295
Bse21I	CCTNAGG	1 cut(s)	1349
Bse3DI	GCAATG	2 cut(s)	545, 1246
Bse8I	GATNNNNATC	1 cut(s)	1318
BseBI	CCWGG	2 cut(s)	1067, 1384
BseDI	CCNNGG	3 cut(s)	600, 1023, 1066
BseGI	GGATG	4 cut(s)	263, 1019, 1134, 1319
BseJI	GATNNNNATC	1 cut(s)	1318
BseLI	CCNNNNNNNGG	3 cut(s)	123, 1144, 1145
BseMI	GCAATG	2 cut(s)	545, 1246
BseMII	CTCAG	1 cut(s)	1363
BseNI	ACTGG	3 cut(s)	38, 101, 1295
BseRI	GAGGAG	1 cut(s)	940
BseXI	GCAGC	1 cut(s)	590
BseYI	CCCAGC	2 cut(s)	189, 984
BsgI	GTGCAG	1 cut(s)	937
BshFI	GGCC	1 cut(s)	1012
BshNI	GGYRCC	1 cut(s)	221
BsiHKCI	CYCGRG	1 cut(s)	1108
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	3 cut(s)	123, 1144, 1145
BsmAI	GTCTC	5 cut(s)	335, 638, 735, 970, 1194
BsmBI	CGTCTC	1 cut(s)	1194
BsmFI	GGGAC	1 cut(s)	112
BsmI	GAATGC	1 cut(s)	1387
BsnI	GGCC	1 cut(s)	1012
Bso31I	GGTCTC	1 cut(s)	970
BsoBI	CYCGRG	1 cut(s)	1108
Bsp1407I	TGTACA	1 cut(s)	487
Bsp143I	GATC	2 cut(s)	722, 902
BspACI	CCGC	4 cut(s)	219, 244, 1009, 1168
BspANI	GGCC	1 cut(s)	1012
BspCNI	CTCAG	1 cut(s)	1362
BspHI	TCATGA	1 cut(s)	842
BspLI	GGNNCC	3 cut(s)	128, 223, 724
BspMAI	CTGCAG	1 cut(s)	1368
BspPI	GGATC	2 cut(s)	717, 730
BspT107I	GGYRCC	1 cut(s)	221
BspTNI	GGTCTC	1 cut(s)	970
BsrDI	GCAATG	2 cut(s)	545, 1246
BsrGI	TGTACA	1 cut(s)	487
BsrI	ACTGG	3 cut(s)	38, 101, 1295
BssECI	CCNNGG	3 cut(s)	600, 1023, 1066
BssMI	GATC	2 cut(s)	722, 902
BssT1I	CCWWGG	2 cut(s)	600, 1023
Bst2UI	CCWGG	2 cut(s)	1067, 1384
Bst4CI	ACNGT	3 cut(s)	83, 783, 812
Bst6I	CTCTTC	4 cut(s)	229, 349, 636, 864
BstAUI	TGTACA	1 cut(s)	487
BstBAI	YACGTR	2 cut(s)	228, 1101
BstDEI	CTNAG	2 cut(s)	836, 1349
BstF5I	GGATG	4 cut(s)	263, 1019, 1134, 1319
BstHHI	GCGC	1 cut(s)	754
BstKTI	GATC	2 cut(s)	725, 905
BstMAI	GTCTC	5 cut(s)	335, 638, 735, 970, 1194
BstMBI	GATC	2 cut(s)	722, 902
BstNI	CCWGG	2 cut(s)	1067, 1384
BstNSI	RCATGY	1 cut(s)	704
BstPAI	GACNNNNGTC	1 cut(s)	1366
BstSCI	CCNGG	2 cut(s)	1065, 1382
BstSFI	CTRYAG	2 cut(s)	1039, 1364
BstV1I	GCAGC	1 cut(s)	590
BstV2I	GAAGAC	2 cut(s)	153, 1371
BstX2I	RGATCY	1 cut(s)	722
BstYI	RGATCY	1 cut(s)	722
Bsu36I	CCTNAGG	1 cut(s)	1349
BsuRI	GGCC	1 cut(s)	1012
BtsCI	GGATG	4 cut(s)	263, 1019, 1134, 1319
BtsI	GCAGTG	1 cut(s)	949
BtsIMutI	CAGTG	2 cut(s)	110, 949
CciI	TCATGA	1 cut(s)	842
CfoI	GCGC	1 cut(s)	754
Cfr13I	GGNCC	1 cut(s)	126
Csp6I	GTAC	2 cut(s)	488, 808
CviAII	CATG	6 cut(s)	563, 692, 701, 843, 906, 1075
CviQI	GTAC	2 cut(s)	488, 808
DdeI	CTNAG	2 cut(s)	836, 1349
DpnI	GATC	2 cut(s)	724, 904
DpnII	GATC	2 cut(s)	722, 902
DraIII	CACNNNGTG	1 cut(s)	228
EaeI	YGGCCR	1 cut(s)	1010
Eam1104I	CTCTTC	4 cut(s)	229, 349, 636, 864
EarI	CTCTTC	4 cut(s)	229, 349, 636, 864
Eco130I	CCWWGG	2 cut(s)	600, 1023
Eco31I	GGTCTC	1 cut(s)	970
Eco47I	GGWCC	1 cut(s)	126
Eco57I	CTGAAG	1 cut(s)	388
Eco72I	CACGTG	1 cut(s)	228
Eco81I	CCTNAGG	1 cut(s)	1349
Eco88I	CYCGRG	1 cut(s)	1108
EcoRI	GAATTC	1 cut(s)	1160
EcoRII	CCWGG	2 cut(s)	1065, 1382
EcoT14I	CCWWGG	2 cut(s)	600, 1023
ErhI	CCWWGG	2 cut(s)	600, 1023
Esp3I	CGTCTC	1 cut(s)	1194
FaeI	CATG	6 cut(s)	566, 695, 704, 846, 909, 1078
FalI	AAGNNNNNCTT	2 cut(s)	867, 899
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	6 cut(s)	562, 691, 700, 842, 905, 1074
FauI	CCCGC	1 cut(s)	1161
FbaI	TGATCA	1 cut(s)	902
Fnu4HI	GCNGC	3 cut(s)	220, 579, 1010
FokI	GGATG	4 cut(s)	270, 1006, 1121, 1306
Fsp4HI	GCNGC	3 cut(s)	220, 579, 1010
FspBI	CTAG	3 cut(s)	648, 916, 1219
GlaI	GCGC	1 cut(s)	753
GluI	GCNGC	3 cut(s)	220, 579, 1010
GsaI	CCCAGC	2 cut(s)	193, 988
GsuI	CTGGAG	2 cut(s)	21, 645
HaeIII	GGCC	1 cut(s)	1012
HhaI	GCGC	1 cut(s)	754
Hin1II	CATG	6 cut(s)	566, 695, 704, 846, 909, 1078
Hin6I	GCGC	1 cut(s)	752
HinP1I	GCGC	1 cut(s)	752
HinfI	GANTC	6 cut(s)	135, 210, 663, 687, 743, 757
HphI	GGTGA	2 cut(s)	672, 752
Hpy166II	GTNNAC	2 cut(s)	490, 808
Hpy188I	TCNGA	4 cut(s)	72, 789, 1050, 1301
Hpy188III	TCNNGA	8 cut(s)	143, 400, 843, 884, 916, 1280, 1359, 1392
Hpy8I	GTNNAC	2 cut(s)	490, 808
HpyAV	CCTTC	5 cut(s)	22, 404, 513, 840, 999
HpyCH4III	ACNGT	3 cut(s)	83, 783, 812
HpyCH4IV	ACGT	3 cut(s)	227, 1100, 1203
HpyCH4V	TGCA	8 cut(s)	378, 612, 700, 897, 954, 1239, 1366, 1427
HpyF3I	CTNAG	2 cut(s)	836, 1349
HpySE526I	ACGT	3 cut(s)	227, 1100, 1203
Hsp92II	CATG	6 cut(s)	566, 695, 704, 846, 909, 1078
HspAI	GCGC	1 cut(s)	752
Ksp22I	TGATCA	1 cut(s)	902
Kzo9I	GATC	2 cut(s)	722, 902
LmnI	GCTCC	3 cut(s)	626, 711, 927
Lsp1109I	GCAGC	1 cut(s)	590
LweI	GCATC	2 cut(s)	610, 884
MaeI	CTAG	3 cut(s)	648, 916, 1219
MaeII	ACGT	3 cut(s)	227, 1100, 1203
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	2 cut(s)	724, 904
MboI	GATC	2 cut(s)	722, 902
MfeI	CAATTG	1 cut(s)	898
MflI	RGATCY	1 cut(s)	722
MlyI	GAGTC	1 cut(s)	737
MmeI	TCCRAC	1 cut(s)	235
MseI	TTAA	6 cut(s)	93, 120, 205, 526, 705, 991
MslI	CAYNNNNRTG	3 cut(s)	705, 917, 959
MspR9I	CCNGG	2 cut(s)	1067, 1384
MunI	CAATTG	1 cut(s)	898
Mva1269I	GAATGC	1 cut(s)	1387
MvaI	CCWGG	2 cut(s)	1067, 1384
NdeII	GATC	2 cut(s)	722, 902
NlaIII	CATG	6 cut(s)	566, 695, 704, 846, 909, 1078
NlaIV	GGNNCC	3 cut(s)	128, 223, 724
NspI	RCATGY	1 cut(s)	704
OliI	CACNNNNGTG	1 cut(s)	959
PagI	TCATGA	1 cut(s)	842
PcsI	WCGNNNNNNNCGW	1 cut(s)	1106
PctI	GAATGC	1 cut(s)	1387
PfeI	GAWTC	5 cut(s)	135, 210, 663, 687, 757
PkrI	GCNGC	3 cut(s)	221, 580, 1011
PleI	GAGTC	1 cut(s)	737
PmaCI	CACGTG	1 cut(s)	228
PmlI	CACGTG	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	737
Ppu21I	YACGTR	2 cut(s)	228, 1101
PshAI	GACNNNNGTC	1 cut(s)	1366
PshBI	ATTAAT	1 cut(s)	991
PsiI	TTATAA	1 cut(s)	973
Psp6I	CCWGG	2 cut(s)	1065, 1382
PspCI	CACGTG	1 cut(s)	228
PspFI	CCCAGC	2 cut(s)	189, 984
PspGI	CCWGG	2 cut(s)	1065, 1382
PspN4I	GGNNCC	3 cut(s)	128, 223, 724
PspPI	GGNCC	1 cut(s)	126
PstI	CTGCAG	1 cut(s)	1368
PsuI	RGATCY	1 cut(s)	722
RsaI	GTAC	2 cut(s)	489, 809
RsaNI	GTAC	2 cut(s)	488, 808
RseI	CAYNNNNRTG	3 cut(s)	705, 917, 959
SaqAI	TTAA	6 cut(s)	93, 120, 205, 526, 705, 991
SatI	GCNGC	3 cut(s)	220, 579, 1010
Sau3AI	GATC	2 cut(s)	722, 902
Sau96I	GGNCC	1 cut(s)	126
SchI	GAGTC	1 cut(s)	737
ScrFI	CCNGG	2 cut(s)	1067, 1384
SfaNI	GCATC	2 cut(s)	610, 884
SfcI	CTRYAG	2 cut(s)	1039, 1364
SinI	GGWCC	1 cut(s)	126
SmiMI	CAYNNNNRTG	3 cut(s)	705, 917, 959
SmlI	CTYRAG	3 cut(s)	332, 884, 1197
SmoI	CTYRAG	3 cut(s)	332, 884, 1197
SpeI	ACTAGT	1 cut(s)	647
SsiI	CCGC	4 cut(s)	219, 244, 1009, 1168
SspI	AATATT	1 cut(s)	819
SspMI	CTAG	3 cut(s)	648, 916, 1219
StyD4I	CCNGG	2 cut(s)	1065, 1382
StyI	CCWWGG	2 cut(s)	600, 1023
TaaI	ACNGT	3 cut(s)	83, 783, 812
TaiI	ACGT	3 cut(s)	230, 1103, 1206
TatI	WGTACW	2 cut(s)	487, 807
TauI	GCSGC	2 cut(s)	222, 1012
TfiI	GAWTC	5 cut(s)	135, 210, 663, 687, 757
Tru1I	TTAA	6 cut(s)	93, 120, 205, 526, 705, 991
Tru9I	TTAA	6 cut(s)	93, 120, 205, 526, 705, 991
TscAI	CASTG	2 cut(s)	110, 956
TseI	GCWGC	1 cut(s)	578
TspRI	CASTG	2 cut(s)	110, 956
VpaK11BI	GGWCC	1 cut(s)	126
VspI	ATTAAT	1 cut(s)	991
XapI	RAATTY	4 cut(s)	394, 595, 1160, 1302
XbaI	TCTAGA	1 cut(s)	915
XceI	RCATGY	1 cut(s)	704
XspI	CTAG	3 cut(s)	648, 916, 1219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.