Rorug07G0342400

Protein trichome birefringence-like 6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0010279
Physical Location & Seq
Forward (+)
37666079 .. 37668824
2746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0342400.1

Sequence Viewer

Length: 1356 bp
ATGGCCCCATTATGCCCTCTCAGATTCCAGGTGAATCGCTGCGAACCGCGACTGATAACACCTGCAAAACCAACACCACATGAAACAAAGCTGCTGTCTGATATCGACGACAAGCAAACCCTCAGGTTCAATGTTCCATTCATCATTTCTTACGAGAACAATCCTTCAATATTGTTGAAACAAAATGACCCTGTTAAGGTGATGAGTGACGCGCTGAGTAGAGCACTGGTGTATTACTATCCTTTGGCTGGTAGGCTCAGGGAAGTGCATAAGAAAAAGCTTACGGTGGACTGCACTGGAGAAGGCATCTTGTTCGTCGAGGCTAATGCCAACGCCACGCTCGACGAACTCAAGGATGCAATTCTACCGCCTTGTCCATTCCTAGAGGAGTTCTTGTTTAACGTGCCGGGCTCTGATGGTATTCTTGATTCTCCTTTGATCTTGATACAGGTAACCCGTCTGACTTGCGGAGGTTTCATACTTGCATTGAGGTTAAACCACACAATGGGTGACGCATTTGGTTTGGTTCAATTCTTGAACGCAGTAGGCGAGATTGCCCGAGGCGCAGAAGCACCTTCTACTCCACCAGTGTGGGAACGAGAGCTCTTGAACGCCCGAGATCCCCCACGAATTTCATGTACACATGATGAATTTGATGATACCATTGATCGCTCGTATCTGAACTCTGCAGCGACGGTCCAACAATCTTTCTGTTTTGGTCCTGAGGAGATAAAGGCCCTTAAAAAGCATCTTCCACCACACCTTTCCACCTGTTCATCCACATTTGATTTAATAACAGCTTGCGTGTGGAAATGTCGAACAATTTCACTTCAAATGGACCCGAAACAGATTGTCCGTCTGTCATGCATAGCTAATGCACGTGGTAAACACAACAATAATGTACGTCTTCCTCGGGGATACTATGGCAACGCATTTGCATATCCGGCTGTTGTTTCAACTGCAGAACGTTTATGTAAGAGTCCGTTGGGATATGCAGTGGAGTTGGTGAAAAAATCGAAAGCTAAAATGAGTGAAGAGTACTTGAGATCTGTGGCTGATTTTACGGTGATAAGAGGACGACCTCCACTTGCAATGAATGGCATTAGTGACTTTACAGTTTCGGATAACACACGAACAGGTGCGGGAGAAATTGATTTCGGGTGGGGAAAGCCAACATATGCTGGAGTTGCTAAGTCCACTGATCTGATTAGCTACTATGTCAAGAAGACAAACAGAGATGAGCAATATGAAGTTCTGGTACCAATATGCTTGCCATTATCGTCCATGGAGAGGTTTCAGCAAGAGTTCAAGAAGATGATTAGTTTCGACAAAGTGAAGATACGATCATGTATATAA

Protein Analysis

451

Amino Acids

50.39

Weight (kDa)

8.43

Isoelectric Point (pI)

43.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 11 - 438 9.8e-81 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 70
Acc36I ACCTGC 1 cut(s) 70
Acc65I GGTACC 1 cut(s) 1258
AccB1I GGYRCC 1 cut(s) 1258
AccB7I CCANNNNNTGG 1 cut(s) 505
AccII CGCG 2 cut(s) 49, 212
AciI CCGC 4 cut(s) 47, 368, 468, 1142
AclI AACGTT 1 cut(s) 967
AclWI GGATC 1 cut(s) 614
AcsI RAATTY 2 cut(s) 630, 650
AcvI CACGTG 1 cut(s) 881
AfaI GTAC 4 cut(s) 640, 903, 1040, 1260
AfiI CCNNNNNNNGG 4 cut(s) 196, 248, 505, 1290
AgsI TTSAA 9 cut(s) 130, 168, 178, 530, 538, 610, 833, 957, 1309
AjnI CCWGG 1 cut(s) 27
AleI CACNNNNGTG 1 cut(s) 589
AluBI AGCT 7 cut(s) 91, 280, 604, 800, 872, 1022, 1212
AluI AGCT 7 cut(s) 91, 280, 604, 800, 872, 1022, 1212
Alw21I GWGCWC 2 cut(s) 226, 606
AlwI GGATC 1 cut(s) 614
Ama87I CYCGRG 3 cut(s) 558, 615, 912
AoxI GGCC 2 cut(s) 3, 735
ApeKI GCWGC 3 cut(s) 39, 91, 689
ApoI RAATTY 2 cut(s) 630, 650
ArsI GACNNNNNNTTYG 2 cut(s) 80, 112
Asp700I GAANNNNTTC 1 cut(s) 823
Asp718I GGTACC 1 cut(s) 1258
AspLEI GCGC 2 cut(s) 214, 566
AspS9I GGNCC 5 cut(s) 4, 697, 719, 736, 838
AsuC2I CCSGG 1 cut(s) 408
AsuHPI GGTGA 5 cut(s) 43, 211, 521, 1018, 1078
AvaI CYCGRG 3 cut(s) 558, 615, 912
AvaII GGWCC 3 cut(s) 697, 719, 838
AxyI CCTNAGG 2 cut(s) 122, 723
BanI GGYRCC 1 cut(s) 1258
BanII GRGCYC 2 cut(s) 413, 606
BarI GAAGNNNNNNTAC 2 cut(s) 1242, 1274
BbrPI CACGTG 1 cut(s) 881
BbsI GAAGAC 2 cut(s) 899, 1232
Bbv12I GWGCWC 2 cut(s) 226, 606
BbvI GCAGC 3 cut(s) 26, 78, 701
BccI CCATC 1 cut(s) 410
BcgI CGANNNNNNTGC 4 cut(s) 295, 308, 329, 342
BciT130I CCWGG 1 cut(s) 29
BciVI GTATCC 1 cut(s) 911
BcnI CCSGG 1 cut(s) 408
BfaI CTAG 1 cut(s) 383
BfmI CTRYAG 2 cut(s) 687, 960
BfuAI ACCTGC 1 cut(s) 70
BfuI GTATCC 1 cut(s) 911
BglII AGATCT 1 cut(s) 1046
BisI GCNGC 3 cut(s) 40, 92, 690
BlsI GCNGC 3 cut(s) 41, 93, 691
BmcAI AGTACT 1 cut(s) 1040
Bme1390I CCNGG 2 cut(s) 29, 408
Bme18I GGWCC 3 cut(s) 697, 719, 838
BmeT110I CYCGRG 3 cut(s) 558, 615, 912
BmgT120I GGNCC 5 cut(s) 4, 697, 719, 736, 838
BmiI GGNNCC 3 cut(s) 6, 840, 1260
BmrFI CCNGG 2 cut(s) 29, 408
BmsI GCATC 3 cut(s) 315, 346, 757
BpiI GAAGAC 2 cut(s) 899, 1232
BpmI CTGGAG 2 cut(s) 318, 1203
Bpu10I CCTNAGC 1 cut(s) 257
BpuEI CTTGAG 2 cut(s) 335, 1063
BpuMI CCSGG 1 cut(s) 408
BsaAI YACGTR 1 cut(s) 881
BsaJI CCNNGG 3 cut(s) 559, 911, 1284
BsaXI ACNNNNNCTCC 2 cut(s) 380, 410
Bsc4I CCNNNNNNNGG 4 cut(s) 196, 248, 505, 1290
Bse1I ACTGG 3 cut(s) 231, 301, 587
Bse21I CCTNAGG 2 cut(s) 122, 723
Bse3DI GCAATG 1 cut(s) 1098
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 3 cut(s) 559, 911, 1284
BseGI GGATG 2 cut(s) 361, 776
BseLI CCNNNNNNNGG 4 cut(s) 196, 248, 505, 1290
BseMI GCAATG 1 cut(s) 1098
BseMII CTCAG 5 cut(s) 34, 136, 206, 271, 714
BseNI ACTGG 3 cut(s) 231, 301, 587
BseRI GAGGAG 2 cut(s) 401, 740
BseXI GCAGC 3 cut(s) 26, 78, 701
BsgI GTGCAG 1 cut(s) 277
Bsh1236I CGCG 2 cut(s) 49, 212
BshFI GGCC 2 cut(s) 5, 737
BshNI GGYRCC 1 cut(s) 1258
BsiHKAI GWGCWC 2 cut(s) 226, 606
BsiHKCI CYCGRG 3 cut(s) 558, 615, 912
BsiSI CCGG 2 cut(s) 407, 944
BslI CCNNNNNNNGG 4 cut(s) 196, 248, 505, 1290
BsnI GGCC 2 cut(s) 5, 737
BsoBI CYCGRG 3 cut(s) 558, 615, 912
Bsp1286I GDGCHC 3 cut(s) 226, 413, 606
Bsp1407I TGTACA 1 cut(s) 638
Bsp143I GATC 6 cut(s) 438, 619, 667, 1046, 1201, 1343
Bsp19I CCATGG 1 cut(s) 1284
BspACI CCGC 4 cut(s) 47, 368, 468, 1142
BspANI GGCC 2 cut(s) 5, 737
BspCNI CTCAG 5 cut(s) 33, 135, 207, 270, 715
BspFNI CGCG 2 cut(s) 49, 212
BspLI GGNNCC 3 cut(s) 6, 840, 1260
BspMAI CTGCAG 2 cut(s) 691, 964
BspMI ACCTGC 1 cut(s) 70
BspPI GGATC 1 cut(s) 614
BspT107I GGYRCC 1 cut(s) 1258
BsrDI GCAATG 1 cut(s) 1098
BsrGI TGTACA 1 cut(s) 638
BsrI ACTGG 3 cut(s) 231, 301, 587
BssECI CCNNGG 3 cut(s) 559, 911, 1284
BssMI GATC 6 cut(s) 438, 619, 667, 1046, 1201, 1343
BssT1I CCWWGG 1 cut(s) 1284
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 4 cut(s) 286, 697, 1066, 1117
Bst6I CTCTTC 1 cut(s) 1029
BstAUI TGTACA 1 cut(s) 638
BstBAI YACGTR 1 cut(s) 881
BstC8I GCNNGC 2 cut(s) 802, 1271
BstDEI CTNAG 6 cut(s) 20, 122, 215, 257, 723, 1191
BstDSI CCRYGG 1 cut(s) 1284
BstEII GGTNACC 1 cut(s) 451
BstF5I GGATG 2 cut(s) 361, 776
BstFNI CGCG 2 cut(s) 49, 212
BstHHI GCGC 2 cut(s) 214, 566
BstKTI GATC 6 cut(s) 441, 622, 670, 1049, 1204, 1346
BstMBI GATC 6 cut(s) 438, 619, 667, 1046, 1201, 1343
BstMWI GCNNNNNNNGC 3 cut(s) 563, 944, 1187
BstNI CCWGG 1 cut(s) 29
BstPI GGTNACC 1 cut(s) 451
BstSCI CCNGG 2 cut(s) 27, 406
BstSFI CTRYAG 2 cut(s) 687, 960
BstUI CGCG 2 cut(s) 49, 212
BstV1I GCAGC 3 cut(s) 26, 78, 701
BstV2I GAAGAC 2 cut(s) 899, 1232
BstX2I RGATCY 2 cut(s) 619, 1046
BstXI CCANNNNNNTGG 1 cut(s) 591
BstYI RGATCY 2 cut(s) 619, 1046
Bsu36I CCTNAGG 2 cut(s) 122, 723
BsuI GTATCC 1 cut(s) 911
BsuRI GGCC 2 cut(s) 5, 737
BtgI CCRYGG 1 cut(s) 1284
BtsCI GGATG 2 cut(s) 361, 776
BtsI GCAGTG 1 cut(s) 1002
BtsIMutI CAGTG 5 cut(s) 224, 294, 594, 1002, 1197
BveI ACCTGC 1 cut(s) 70
Cac8I GCNNGC 2 cut(s) 802, 1271
CfoI GCGC 2 cut(s) 214, 566
Cfr13I GGNCC 5 cut(s) 4, 697, 719, 736, 838
CseI GACGC 2 cut(s) 218, 521
Csp6I GTAC 4 cut(s) 639, 902, 1039, 1259
CviAII CATG 6 cut(s) 80, 636, 644, 864, 1285, 1347
CviQI GTAC 4 cut(s) 639, 902, 1039, 1259
DdeI CTNAG 6 cut(s) 20, 122, 215, 257, 723, 1191
DpnI GATC 6 cut(s) 440, 621, 669, 1048, 1203, 1345
DpnII GATC 6 cut(s) 438, 619, 667, 1046, 1201, 1343
Eam1104I CTCTTC 1 cut(s) 1029
EarI CTCTTC 1 cut(s) 1029
Ecl136II GAGCTC 1 cut(s) 604
Eco130I CCWWGG 1 cut(s) 1284
Eco24I GRGCYC 2 cut(s) 413, 606
Eco32I GATATC 1 cut(s) 103
Eco47I GGWCC 3 cut(s) 697, 719, 838
Eco53kI GAGCTC 1 cut(s) 604
Eco72I CACGTG 1 cut(s) 881
Eco81I CCTNAGG 2 cut(s) 122, 723
Eco88I CYCGRG 3 cut(s) 558, 615, 912
Eco91I GGTNACC 1 cut(s) 451
EcoICRI GAGCTC 1 cut(s) 604
EcoO109I RGGNCCY 1 cut(s) 736
EcoO65I GGTNACC 1 cut(s) 451
EcoRII CCWGG 1 cut(s) 27
EcoRV GATATC 1 cut(s) 103
EcoT14I CCWWGG 1 cut(s) 1284
EcoT22I ATGCAT 1 cut(s) 869
EcoT38I GRGCYC 2 cut(s) 413, 606
ErhI CCWWGG 1 cut(s) 1284
FaeI CATG 6 cut(s) 83, 639, 647, 867, 1288, 1350
FatI CATG 6 cut(s) 79, 635, 643, 863, 1284, 1346
FauI CCCGC 1 cut(s) 1135
FauNDI CATATG 1 cut(s) 1177
Fnu4HI GCNGC 3 cut(s) 40, 92, 690
FokI GGATG 2 cut(s) 368, 763
FriOI GRGCYC 2 cut(s) 413, 606
Fsp4HI GCNGC 3 cut(s) 40, 92, 690
FspBI CTAG 1 cut(s) 383
GlaI GCGC 2 cut(s) 213, 565
GluI GCNGC 3 cut(s) 40, 92, 690
GsuI CTGGAG 2 cut(s) 318, 1203
HaeIII GGCC 2 cut(s) 5, 737
HapII CCGG 2 cut(s) 407, 944
HgaI GACGC 2 cut(s) 218, 521
HhaI GCGC 2 cut(s) 214, 566
Hin1II CATG 6 cut(s) 83, 639, 647, 867, 1288, 1350
Hin6I GCGC 2 cut(s) 212, 564
HinP1I GCGC 2 cut(s) 212, 564
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 4 cut(s) 24, 34, 428, 979
HpaII CCGG 2 cut(s) 407, 944
HphI GGTGA 5 cut(s) 43, 211, 521, 1018, 1078
Hpy166II GTNNAC 4 cut(s) 289, 641, 887, 1197
Hpy188I TCNGA 7 cut(s) 23, 100, 415, 462, 681, 1123, 1206
Hpy188III TCNNGA 7 cut(s) 425, 442, 535, 607, 722, 1222, 1309
Hpy8I GTNNAC 4 cut(s) 289, 641, 887, 1197
Hpy99I CGWCG 4 cut(s) 110, 320, 347, 697
HpyAV CCTTC 3 cut(s) 174, 296, 585
HpyCH4III ACNGT 4 cut(s) 286, 697, 1066, 1117
HpyCH4IV ACGT 4 cut(s) 402, 880, 904, 967
HpyF10VI GCNNNNNNNGC 3 cut(s) 563, 944, 1187
HpyF3I CTNAG 6 cut(s) 20, 122, 215, 257, 723, 1191
HpySE526I ACGT 4 cut(s) 402, 880, 904, 967
Hsp92II CATG 6 cut(s) 83, 639, 647, 867, 1288, 1350
HspAI GCGC 2 cut(s) 212, 564
KpnI GGTACC 1 cut(s) 1262
Kzo9I GATC 6 cut(s) 438, 619, 667, 1046, 1201, 1343
Lsp1109I GCAGC 3 cut(s) 26, 78, 701
LweI GCATC 3 cut(s) 315, 346, 757
MaeI CTAG 1 cut(s) 383
MaeII ACGT 4 cut(s) 402, 880, 904, 967
MaeIII GTNAC 4 cut(s) 206, 451, 509, 1106
MalI GATC 6 cut(s) 440, 621, 669, 1048, 1203, 1345
MboI GATC 6 cut(s) 438, 619, 667, 1046, 1201, 1343
MboII GAAGA 6 cut(s) 743, 899, 1046, 1237, 1324, 1348
MflI RGATCY 2 cut(s) 619, 1046
MhlI GDGCHC 3 cut(s) 226, 413, 606
MluCI AATT 6 cut(s) 360, 530, 630, 650, 822, 1149
MlyI GAGTC 1 cut(s) 988
MmeI TCCRAC 1 cut(s) 724
Mph1103I ATGCAT 1 cut(s) 869
MroXI GAANNNNTTC 1 cut(s) 823
MseI TTAA 5 cut(s) 195, 399, 494, 741, 791
MslI CAYNNNNRTG 1 cut(s) 589
MspI CCGG 2 cut(s) 407, 944
MspR9I CCNGG 2 cut(s) 29, 408
MvaI CCWGG 1 cut(s) 29
MvnI CGCG 2 cut(s) 49, 212
MwoI GCNNNNNNNGC 3 cut(s) 563, 944, 1187
NciI CCSGG 1 cut(s) 408
NcoI CCATGG 1 cut(s) 1284
NdeI CATATG 1 cut(s) 1177
NdeII GATC 6 cut(s) 438, 619, 667, 1046, 1201, 1343
NlaIII CATG 6 cut(s) 83, 639, 647, 867, 1288, 1350
NlaIV GGNNCC 3 cut(s) 6, 840, 1260
NmuCI GTSAC 3 cut(s) 206, 509, 1106
NsiI ATGCAT 1 cut(s) 869
OliI CACNNNNGTG 1 cut(s) 589
PaqCI CACCTGC 1 cut(s) 70
PcsI WCGNNNNNNNCGW 2 cut(s) 339, 546
PdmI GAANNNNTTC 1 cut(s) 823
PfeI GAWTC 3 cut(s) 24, 34, 428
PflMI CCANNNNNTGG 1 cut(s) 505
PkrI GCNGC 3 cut(s) 41, 93, 691
PleI GAGTC 1 cut(s) 987
PmaCI CACGTG 1 cut(s) 881
PmlI CACGTG 1 cut(s) 881
PpsI GAGTC 1 cut(s) 987
Ppu21I YACGTR 1 cut(s) 881
Psp124BI GAGCTC 1 cut(s) 606
Psp1406I AACGTT 1 cut(s) 967
Psp6I CCWGG 1 cut(s) 27
PspCI CACGTG 1 cut(s) 881
PspEI GGTNACC 1 cut(s) 451
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 3 cut(s) 6, 840, 1260
PspPI GGNCC 5 cut(s) 4, 697, 719, 736, 838
PstI CTGCAG 2 cut(s) 691, 964
PsuI RGATCY 2 cut(s) 619, 1046
RsaI GTAC 4 cut(s) 640, 903, 1040, 1260
RsaNI GTAC 4 cut(s) 639, 902, 1039, 1259
RseI CAYNNNNRTG 1 cut(s) 589
SacI GAGCTC 1 cut(s) 606
SaqAI TTAA 5 cut(s) 195, 399, 494, 741, 791
SatI GCNGC 3 cut(s) 40, 92, 690
Sau3AI GATC 6 cut(s) 438, 619, 667, 1046, 1201, 1343
Sau96I GGNCC 5 cut(s) 4, 697, 719, 736, 838
ScaI AGTACT 1 cut(s) 1040
SchI GAGTC 1 cut(s) 988
ScrFI CCNGG 2 cut(s) 29, 408
SduI GDGCHC 3 cut(s) 226, 413, 606
SfaNI GCATC 3 cut(s) 315, 346, 757
SfcI CTRYAG 2 cut(s) 687, 960
SinI GGWCC 3 cut(s) 697, 719, 838
SmiMI CAYNNNNRTG 1 cut(s) 589
SmlI CTYRAG 2 cut(s) 350, 1042
SmoI CTYRAG 2 cut(s) 350, 1042
Sse9I AATT 6 cut(s) 360, 530, 630, 650, 822, 1149
SsiI CCGC 4 cut(s) 47, 368, 468, 1142
SspI AATATT 1 cut(s) 171
SspMI CTAG 1 cut(s) 383
SstI GAGCTC 1 cut(s) 606
StyD4I CCNGG 2 cut(s) 27, 406
StyI CCWWGG 1 cut(s) 1284
TaaI ACNGT 4 cut(s) 286, 697, 1066, 1117
TaiI ACGT 4 cut(s) 405, 883, 907, 970
TaqI TCGA 6 cut(s) 105, 318, 342, 817, 1016, 1326
TasI AATT 6 cut(s) 360, 530, 630, 650, 822, 1149
TatI WGTACW 2 cut(s) 638, 1038
TfiI GAWTC 3 cut(s) 24, 34, 428
Tru1I TTAA 5 cut(s) 195, 399, 494, 741, 791
Tru9I TTAA 5 cut(s) 195, 399, 494, 741, 791
TscAI CASTG 5 cut(s) 231, 301, 594, 1002, 1204
TseFI GTSAC 3 cut(s) 206, 509, 1106
TseI GCWGC 3 cut(s) 39, 91, 689
Tsp45I GTSAC 3 cut(s) 206, 509, 1106
TspDTI ATGAA 8 cut(s) 96, 130, 466, 624, 663, 765, 1109, 1263
TspGWI ACGGA 2 cut(s) 845, 972
TspRI CASTG 5 cut(s) 231, 301, 594, 1002, 1204
Van91I CCANNNNNTGG 1 cut(s) 505
VpaK11BI GGWCC 3 cut(s) 697, 719, 838
XapI RAATTY 2 cut(s) 630, 650
XmnI GAANNNNTTC 1 cut(s) 823
XspI CTAG 1 cut(s) 383
ZrmI AGTACT 1 cut(s) 1040
Zsp2I ATGCAT 1 cut(s) 869
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.