Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0010279

Physical Location & Seq

Genomic Coordinates Reverse (-)

28872921 .. 28875656

Gene Structure 2736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g39120.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1527 bp

ATGGAGAGGCAGAGGAGTTTCTCACTGAAACCCACCAGATTCTTGGTCTTTTCTTTCACAATCTTCTCCTCTTTCATCTTCCTCACTTTCTTCACCACTTGGCTCATCAAAGCCACCCCTCCAGTTCCCCAACAATTCCATCTCCAGTTCAACAAGTCCTCCTTCGTTTTGGGTTTCTCTGGAAATTTACCCCTCAATGGTCTCAAAGATTCAATCTTGAAGACCACCCATGTCACCAAACCTGAAAATGCTTCTGGGTCTGCTGGAATTTCAGTTCTTGCTGTGTTACACAGGAAGGCCAATGAATCCAAAGTGGCACCAAGTGAAGAAGAGAGAGGCGGTGGTGGGTTGGATGGTAATTTCACAGCATTGGCACCAGTAGAGCAAAATGTTGGAGCAGAGGAAGTGGAAAAGATTGAATTGGTCTCGAGTAGTAGTGAAAAGATTGAAGAGAACAAGAATGAAGCAGCTTCATTTGGAAAGACTGAAACTTTAAGTAGTGGGAAGGTTGAAGATGAGAGAGTAAATGGAGCTTGTGATTTTACAAGAGGGAAGTGGGTTTATGATGAGAGCTATCCTTTGTACACAAATGGTTCATGTTCTTTGATAGATGAAGGGTTTAATTGTCAGGGCAATGGGAGATTAGATAAAGACTACATGAAGTGGAGGTGGCAACCCCAAGATTGTGAAATTCCAAGGTTCAATGCAACAAAGATGCTGGAGCTAATAAGAGGGAAGAGACTAGTTTTTGTAGGTGATTCAATCAACAGGAATCAATGGGAATCCATGTTGTGCATGTTAATGGGAGCAGTAAAAGATCCAAGCAGGGTCTACGAGACTCACAAGCGCAGAATCACTAAAGGAAAGGGAAATTACAGTTTCAGATTTGTGGATTACAAGTGTACAGTTGAATACTATGTGAGCCATTTCTTAGTTCATGAAGCAAAGGCAAGGTTAGGGCAGAAGAGGAAGCAAGTATTGAGGATTGATGCTATTGATCATGGCTCATCTAGATGGAAAGGAGCTGATATTTTGGTATTCAACACTGCACATTGGTGGTCACATTATAAAACCAAAGCCGGGATTAATTACTACCAAGAAGGCGGCCAAGTTCATCCAAAGCTTGATGTCTCCATAGCTTTCAGAAAAGCTCTGATGACCTGGGCATCATGGGTTGATAGATACATCAACCCACGCAGAACTCGGGTTTTCTTTCGTAGTTCAGCACCATCACATTTCAGGGGAGGTCAATGGAATTCAGGTGGGAGTTGCAAGGAAGCTACTAAACCACTTGAGACTTTAAGTGCTTCTCCTAGTGAGAAAATTGTGATTGCAGAGGAAGTCATAAAGAAGATGAGAACTCCCATCACATTCTTGAACATAACTGGATTATCAGAATACAGAGTAGATGGTCATCCATCTATATATGGAAGAAAATCAGCCTCAGGCAGTCAAGACTGCAGTCATTGGTGTCTTCCTGGCATTCCTGATGTGTGGAATGAATTGTTGTATGCTCATTTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

509

Amino Acids

57.55

Weight (kDa)

9.21

Isoelectric Point (pI)

42.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	178 - 230	2.5e-23	PMR5 N terminal Domain
PC-Esterase	PF13839	231 - 505	1e-99	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62390 AT3G62390
fragaria_vesca	FvH4_5g39120 FvH4_5g39120 FvH4_5g39120
malus_domestica	MD03G1294400.v1.1
prunus_persica	Prupe.8G266500_v2.0.a1
pyrus_communis	pycom03g23280
rosa_chinensis	RchiOBHm_Chr4g0407051 RchiOBHm_Chr5g0073791 RchiOBHm_Chr7g0241111
rosa_laevigata	RLG00000000596
rosa_multiflora	Rmu_sc0003187.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219260
rosa_rugosa	Rorug07G0342400 Rorug07G0342500
rosa_samantha	Rh7AG497600 Rh7BG468400 Rh7CG514500 Rh7DG481600
rosa_wichuraiana	Rw7G041980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1068
AccB1I	GGYRCC	2 cut(s)	316, 373
AccI	GTMKAC	1 cut(s)	831
AciI	CCGC	2 cut(s)	339, 1104
AclWI	GGATC	1 cut(s)	812
AcoI	YGGCCR	1 cut(s)	1105
AcsI	RAATTY	4 cut(s)	184, 267, 690, 1255
AdeI	CACNNNGTG	1 cut(s)	323
AfaI	GTAC	2 cut(s)	584, 904
AfiI	CCNNNNNNNGG	2 cut(s)	197, 1080
AhlI	ACTAGT	1 cut(s)	742
AjnI	CCWGG	2 cut(s)	1160, 1477
AleI	CACNNNNGTG	1 cut(s)	1054
AloI	GAACNNNNNNTCC	2 cut(s)	258, 290
AluBI	AGCT	9 cut(s)	470, 533, 573, 724, 1025, 1123, 1139, 1151, 1280
AluI	AGCT	9 cut(s)	470, 533, 573, 724, 1025, 1123, 1139, 1151, 1280
Alw26I	GTCTC	6 cut(s)	206, 430, 733, 830, 1135, 1289
AlwI	GGATC	1 cut(s)	812
Ama87I	CYCGRG	2 cut(s)	427, 1203
AoxI	GGCC	2 cut(s)	297, 1105
ApeKI	GCWGC	1 cut(s)	467
ApoI	RAATTY	4 cut(s)	184, 267, 690, 1255
AseI	ATTAAT	1 cut(s)	1086
AspLEI	GCGC	1 cut(s)	849
AsuC2I	CCSGG	1 cut(s)	1081
AsuHPI	GGTGA	3 cut(s)	85, 226, 767
AvaI	CYCGRG	2 cut(s)	427, 1203
AxyI	CCTNAGG	1 cut(s)	1444
BanI	GGYRCC	2 cut(s)	316, 373
BbsI	GAAGAC	2 cut(s)	227, 1466
BbvI	GCAGC	1 cut(s)	479
BccI	CCATC	7 cut(s)	147, 347, 1008, 1237, 1373, 1403, 1426
BciT130I	CCWGG	2 cut(s)	1162, 1479
BclI	TGATCA	1 cut(s)	997
BcnI	CCSGG	1 cut(s)	1081
BcoDI	GTCTC	6 cut(s)	206, 430, 733, 830, 1135, 1289
BcuI	ACTAGT	1 cut(s)	742
BfaI	CTAG	3 cut(s)	743, 1011, 1314
BfmI	CTRYAG	1 cut(s)	1459
BisI	GCNGC	2 cut(s)	468, 1105
BlsI	GCNGC	2 cut(s)	469, 1106
Bme1390I	CCNGG	3 cut(s)	1081, 1162, 1479
BmeT110I	CYCGRG	2 cut(s)	427, 1203
BmiI	GGNNCC	2 cut(s)	318, 375
BmrFI	CCNGG	3 cut(s)	1081, 1162, 1479
BmsI	GCATC	3 cut(s)	705, 979, 1175
BoxI	GACNNNNGTC	1 cut(s)	1461
BpiI	GAAGAC	2 cut(s)	227, 1466
BpmI	CTGGAG	3 cut(s)	105, 128, 740
BpuEI	CTTGAG	1 cut(s)	1313
BpuMI	CCSGG	1 cut(s)	1081
BsaBI	GATNNNNATC	1 cut(s)	1413
BsaI	GGTCTC	2 cut(s)	206, 430
BsaJI	CCNNGG	2 cut(s)	695, 1161
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 1080
Bse1I	ACTGG	4 cut(s)	122, 145, 377, 1390
Bse21I	CCTNAGG	1 cut(s)	1444
Bse3DI	GCAATG	1 cut(s)	640
Bse8I	GATNNNNATC	1 cut(s)	1413
BseBI	CCWGG	2 cut(s)	1162, 1479
BseDI	CCNNGG	2 cut(s)	695, 1161
BseGI	GGATG	3 cut(s)	358, 1114, 1414
BseJI	GATNNNNATC	1 cut(s)	1413
BseLI	CCNNNNNNNGG	2 cut(s)	197, 1080
BseMI	GCAATG	1 cut(s)	640
BseMII	CTCAG	1 cut(s)	1458
BseNI	ACTGG	4 cut(s)	122, 145, 377, 1390
BseRI	GAGGAG	2 cut(s)	28, 58
BseXI	GCAGC	1 cut(s)	479
BsgI	GTGCAG	1 cut(s)	1032
BshFI	GGCC	2 cut(s)	299, 1107
BshNI	GGYRCC	2 cut(s)	316, 373
BsiHKCI	CYCGRG	2 cut(s)	427, 1203
BsiSI	CCGG	1 cut(s)	1080
BslI	CCNNNNNNNGG	2 cut(s)	197, 1080
BsmAI	GTCTC	6 cut(s)	206, 430, 733, 830, 1135, 1289
BsmI	GAATGC	1 cut(s)	1482
BsnI	GGCC	2 cut(s)	299, 1107
Bso31I	GGTCTC	2 cut(s)	206, 430
BsoBI	CYCGRG	2 cut(s)	427, 1203
Bsp1407I	TGTACA	2 cut(s)	582, 902
Bsp143I	GATC	2 cut(s)	817, 997
BspACI	CCGC	2 cut(s)	339, 1104
BspANI	GGCC	2 cut(s)	299, 1107
BspCNI	CTCAG	1 cut(s)	1457
BspHI	TCATGA	1 cut(s)	937
BspLI	GGNNCC	2 cut(s)	318, 375
BspMAI	CTGCAG	1 cut(s)	1463
BspPI	GGATC	1 cut(s)	812
BspT107I	GGYRCC	2 cut(s)	316, 373
BspTNI	GGTCTC	2 cut(s)	206, 430
BsrDI	GCAATG	1 cut(s)	640
BsrGI	TGTACA	2 cut(s)	582, 902
BsrI	ACTGG	4 cut(s)	122, 145, 377, 1390
BssECI	CCNNGG	2 cut(s)	695, 1161
BssMI	GATC	2 cut(s)	817, 997
BssT1I	CCWWGG	1 cut(s)	695
Bst2UI	CCWGG	2 cut(s)	1162, 1479
Bst4CI	ACNGT	2 cut(s)	878, 907
Bst6I	CTCTTC	4 cut(s)	324, 444, 731, 959
BstAUI	TGTACA	2 cut(s)	582, 902
BstDEI	CTNAG	2 cut(s)	931, 1444
BstF5I	GGATG	3 cut(s)	358, 1114, 1414
BstHHI	GCGC	1 cut(s)	849
BstKTI	GATC	2 cut(s)	820, 1000
BstMAI	GTCTC	6 cut(s)	206, 430, 733, 830, 1135, 1289
BstMBI	GATC	2 cut(s)	817, 997
BstNI	CCWGG	2 cut(s)	1162, 1479
BstNSI	RCATGY	1 cut(s)	799
BstPAI	GACNNNNGTC	1 cut(s)	1461
BstSCI	CCNGG	3 cut(s)	1079, 1160, 1477
BstSFI	CTRYAG	1 cut(s)	1459
BstV1I	GCAGC	1 cut(s)	479
BstV2I	GAAGAC	2 cut(s)	227, 1466
BstX2I	RGATCY	1 cut(s)	817
BstXI	CCANNNNNNTGG	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	817
Bsu36I	CCTNAGG	1 cut(s)	1444
BsuRI	GGCC	2 cut(s)	299, 1107
BtsCI	GGATG	3 cut(s)	358, 1114, 1414
BtsI	GCAGTG	1 cut(s)	1044
BtsIMutI	CAGTG	2 cut(s)	23, 1044
CciI	TCATGA	1 cut(s)	937
CfoI	GCGC	1 cut(s)	849
Csp6I	GTAC	2 cut(s)	583, 903
CviAII	CATG	8 cut(s)	230, 597, 658, 787, 796, 938, 1001, 1170
CviQI	GTAC	2 cut(s)	583, 903
DdeI	CTNAG	2 cut(s)	931, 1444
DpnI	GATC	2 cut(s)	819, 999
DpnII	GATC	2 cut(s)	817, 997
DraIII	CACNNNGTG	1 cut(s)	323
EaeI	YGGCCR	1 cut(s)	1105
Eam1104I	CTCTTC	4 cut(s)	324, 444, 731, 959
EarI	CTCTTC	4 cut(s)	324, 444, 731, 959
Eco130I	CCWWGG	1 cut(s)	695
Eco31I	GGTCTC	2 cut(s)	206, 430
Eco81I	CCTNAGG	1 cut(s)	1444
Eco88I	CYCGRG	2 cut(s)	427, 1203
EcoRI	GAATTC	1 cut(s)	1255
EcoRII	CCWGG	2 cut(s)	1160, 1477
EcoT14I	CCWWGG	1 cut(s)	695
ErhI	CCWWGG	1 cut(s)	695
FaeI	CATG	8 cut(s)	233, 600, 661, 790, 799, 941, 1004, 1173
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FatI	CATG	8 cut(s)	229, 596, 657, 786, 795, 937, 1000, 1169
FbaI	TGATCA	1 cut(s)	997
FblI	GTMKAC	1 cut(s)	831
Fnu4HI	GCNGC	2 cut(s)	468, 1105
FokI	GGATG	3 cut(s)	365, 1101, 1401
Fsp4HI	GCNGC	2 cut(s)	468, 1105
FspBI	CTAG	3 cut(s)	743, 1011, 1314
GlaI	GCGC	1 cut(s)	848
GluI	GCNGC	2 cut(s)	468, 1105
GsuI	CTGGAG	3 cut(s)	105, 128, 740
HaeIII	GGCC	2 cut(s)	299, 1107
HapII	CCGG	1 cut(s)	1080
HhaI	GCGC	1 cut(s)	849
Hin1II	CATG	8 cut(s)	233, 600, 661, 790, 799, 941, 1004, 1173
Hin6I	GCGC	1 cut(s)	847
HinP1I	GCGC	1 cut(s)	847
HindIII	AAGCTT	1 cut(s)	1121
HinfI	GANTC	8 cut(s)	39, 209, 305, 758, 772, 782, 838, 852
HpaII	CCGG	1 cut(s)	1080
HphI	GGTGA	3 cut(s)	85, 226, 767
Hpy166II	GTNNAC	3 cut(s)	585, 832, 903
Hpy188I	TCNGA	4 cut(s)	884, 1145, 1155, 1396
Hpy188III	TCNNGA	8 cut(s)	180, 217, 427, 938, 1011, 1375, 1454, 1487
Hpy8I	GTNNAC	3 cut(s)	585, 832, 903
HpyAV	CCTTC	5 cut(s)	172, 289, 499, 608, 1094
HpyCH4III	ACNGT	2 cut(s)	878, 907
HpyCH4V	TGCA	7 cut(s)	707, 795, 1049, 1272, 1334, 1461, 1522
HpyF3I	CTNAG	2 cut(s)	931, 1444
Hsp92II	CATG	8 cut(s)	233, 600, 661, 790, 799, 941, 1004, 1173
HspAI	GCGC	1 cut(s)	847
Ksp22I	TGATCA	1 cut(s)	997
Kzo9I	GATC	2 cut(s)	817, 997
LmnI	GCTCC	5 cut(s)	395, 530, 721, 806, 1022
Lsp1109I	GCAGC	1 cut(s)	479
LweI	GCATC	3 cut(s)	705, 979, 1175
MaeI	CTAG	3 cut(s)	743, 1011, 1314
MaeIII	GTNAC	3 cut(s)	232, 285, 1059
MalI	GATC	2 cut(s)	819, 999
MboI	GATC	2 cut(s)	817, 997
MflI	RGATCY	1 cut(s)	817
MlyI	GAGTC	1 cut(s)	832
MmeI	TCCRAC	2 cut(s)	330, 373
MseI	TTAA	5 cut(s)	494, 621, 800, 1086, 1301
MslI	CAYNNNNRTG	3 cut(s)	800, 1012, 1054
MspI	CCGG	1 cut(s)	1080
MspR9I	CCNGG	3 cut(s)	1081, 1162, 1479
Mva1269I	GAATGC	1 cut(s)	1482
MvaI	CCWGG	2 cut(s)	1162, 1479
NciI	CCSGG	1 cut(s)	1081
NdeII	GATC	2 cut(s)	817, 997
NlaIII	CATG	8 cut(s)	233, 600, 661, 790, 799, 941, 1004, 1173
NlaIV	GGNNCC	2 cut(s)	318, 375
NmuCI	GTSAC	2 cut(s)	232, 1059
NspI	RCATGY	1 cut(s)	799
OliI	CACNNNNGTG	1 cut(s)	1054
PaeR7I	CTCGAG	1 cut(s)	427
PagI	TCATGA	1 cut(s)	937
PctI	GAATGC	1 cut(s)	1482
PfeI	GAWTC	7 cut(s)	39, 209, 305, 758, 772, 782, 852
PkrI	GCNGC	2 cut(s)	469, 1106
PleI	GAGTC	1 cut(s)	832
PpsI	GAGTC	1 cut(s)	832
PshAI	GACNNNNGTC	1 cut(s)	1461
PshBI	ATTAAT	1 cut(s)	1086
PsiI	TTATAA	1 cut(s)	1068
Psp6I	CCWGG	2 cut(s)	1160, 1477
PspGI	CCWGG	2 cut(s)	1160, 1477
PspN4I	GGNNCC	2 cut(s)	318, 375
PstI	CTGCAG	1 cut(s)	1463
PsuI	RGATCY	1 cut(s)	817
RsaI	GTAC	2 cut(s)	584, 904
RsaNI	GTAC	2 cut(s)	583, 903
RseI	CAYNNNNRTG	3 cut(s)	800, 1012, 1054
SaqAI	TTAA	5 cut(s)	494, 621, 800, 1086, 1301
SatI	GCNGC	2 cut(s)	468, 1105
Sau3AI	GATC	2 cut(s)	817, 997
SchI	GAGTC	1 cut(s)	832
ScrFI	CCNGG	3 cut(s)	1081, 1162, 1479
SfaNI	GCATC	3 cut(s)	705, 979, 1175
SfcI	CTRYAG	1 cut(s)	1459
Sfr274I	CTCGAG	1 cut(s)	427
SlaI	CTCGAG	1 cut(s)	427
SmiMI	CAYNNNNRTG	3 cut(s)	800, 1012, 1054
SmlI	CTYRAG	2 cut(s)	427, 1292
SmoI	CTYRAG	2 cut(s)	427, 1292
SpeI	ACTAGT	1 cut(s)	742
SsiI	CCGC	2 cut(s)	339, 1104
SspMI	CTAG	3 cut(s)	743, 1011, 1314
StyD4I	CCNGG	3 cut(s)	1079, 1160, 1477
StyI	CCWWGG	1 cut(s)	695
TaaI	ACNGT	2 cut(s)	878, 907
TaqI	TCGA	1 cut(s)	428
TatI	WGTACW	2 cut(s)	582, 902
TauI	GCSGC	1 cut(s)	1107
TfiI	GAWTC	7 cut(s)	39, 209, 305, 758, 772, 782, 852
Tru1I	TTAA	5 cut(s)	494, 621, 800, 1086, 1301
Tru9I	TTAA	5 cut(s)	494, 621, 800, 1086, 1301
TscAI	CASTG	2 cut(s)	30, 1051
TseFI	GTSAC	2 cut(s)	232, 1059
TseI	GCWGC	1 cut(s)	467
Tsp45I	GTSAC	2 cut(s)	232, 1059
TspRI	CASTG	2 cut(s)	30, 1051
VspI	ATTAAT	1 cut(s)	1086
XapI	RAATTY	4 cut(s)	184, 267, 690, 1255
XbaI	TCTAGA	1 cut(s)	1010
XceI	RCATGY	1 cut(s)	799
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XhoI	CTCGAG	1 cut(s)	427
XmiI	GTMKAC	1 cut(s)	831
XspI	CTAG	3 cut(s)	743, 1011, 1314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.