AT4G00550

Glycosyl transferases group 1

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
237901 .. 240579
2679 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G00550.1

Sequence Viewer

Length: 1422 bp
ATGACTAATCAGCAGGAGCAACACATTGCGATATTTACAACAGCTAGTATTCCATGGCTTACGGGAACTGCTGTTAATCCTCTCTTCCGTGCTGCCTACCTTGCAAATGATGGGGAAAGACGGGTCACGTTGGTGATTCCATGGCTGACTTTGAAGCACCAAAAGCTTGTCTACCCAAATAGCATCACTTTTAGTTCCCCGTCAGAGCAAGAAGCTTATGTCCGCCAGTGGCTTGAGGAGAGAGTCTCTTTTCGTTTAGCCTTTGAGATACGTTTCTATCCTGGAAAGTTTGCTATTGACAAAAGGAGTATTCTTCCTGTTGGGGATATATCTGATGCCATTCCTGATGAAGAGGCAGACATTGCTGTCCTCGAGGAGCCTGAGCATCTCACATGGTTTCATCATGGCCAAAAATGGAAAACTAAGTTCAACTACGTCATAGGAATCGTACACACTAACTACTTGGAATACGTTAAAAGAGAGAAACAAGGCCGTGTCAAAGCATTTTTCCTCAAATACTTAAATAGTTGGGTTGTTGGCATTTACTGCCACAAGGTAATCAGGTTATCTGCTGCGACTCAAGAATACCCTAAATCTATAGTCTGCAATGTTCATGGCGTCAACCCTAAATTTCTCGAAATTGGGTTGAGAAAACTAGAACAGCAGAAGCTCCAGGAGCAGCCCTTCACTAAAGGCGCATACTACATTGGTAAGATGGTCTGGAGCAAAGGGTACAAGGAGCTTCTTAAACTACTTGAGAAACACCAAAAGGAACTTGCCGAGTTAGAGGTTGATTTATACGGTGATGGAGAGGACTCTGAAGAGATCAAAGAAGCAGCCCGAAAACTCGACTTGACGGTTAATGTTTACCCAGGACGTGATCACGCTGACTCGCTATTTCACAACTATAAAGTGTTTCTCAACCCCAGCACGACAGACGTTGTGTGTACAACAACTGCAGAAGCCTTGGCGATGGGAAAAATAGTAGTATGCGCGAATCACATATCGAACAAGTTCTTCAAACAGTTTCCCAACTGCAGAACCTATGACGATGGACAAGGTTTTGTAAGAGCCACGCTCAAGGCTCTTGGGGAACAACCATCGCAACTTACAGAGCAACAAAGGCATGAACTATCATGGGAAGCTGCTACACAACGGTTTATAAAAGTCTCTGATCTGAACCGGTTATCAAGAGCTGATTCGAACTTGTCAAAGAGAAGTGTGTTTGCGTCATCTTCGATTAGTGTGGGGAAAAACTTGGAGGATATGTCAGCGTATATTCATTTCTTGGCGTCTGGATTTGAAGCTTCCAGAACAGCTTTTGGTGCTATACCTGGAAGCTTGCAGCCCGATGAAGAGTTATGTAGAGATCTTGGTTTGTCTCTCAACACTCCTTCCCCAAATACTCGCAAGCAAGATTGA

Protein Analysis

473

Amino Acids

53.91

Weight (kDa)

7.66

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glycos_transf_1 PF00534 224 - 334 1.4e-12 Glycosyl transferases group 1
Glyco_trans_1_4 PF13692 234 - 334 1.2e-10 Glycosyl transferases group 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1163
AasI GACNNNNNNGTC 1 cut(s) 365
AbsI CCTCGAGG 1 cut(s) 371
AccI GTMKAC 1 cut(s) 171
AccII CGCG 1 cut(s) 995
AciI CCGC 1 cut(s) 223
AcoI YGGCCR 1 cut(s) 406
AcsI RAATTY 1 cut(s) 629
AcuI CTGAAG 1 cut(s) 840
AcyI GRCGYC 2 cut(s) 618, 1292
AfaI GTAC 3 cut(s) 450, 734, 949
AgeI ACCGGT 1 cut(s) 1182
AgsI TTSAA 4 cut(s) 154, 430, 1021, 1304
AjiI CACGTC 1 cut(s) 878
AjnI CCWGG 4 cut(s) 280, 672, 871, 1333
AleI CACNNNNGTG 1 cut(s) 131
Alw26I GTCTC 3 cut(s) 250, 1174, 1386
Ama87I CYCGRG 1 cut(s) 371
AoxI GGCC 2 cut(s) 406, 490
ApeKI GCWGC 6 cut(s) 92, 572, 679, 836, 1145, 1345
ApoI RAATTY 1 cut(s) 629
AsiGI ACCGGT 1 cut(s) 1182
Asp700I GAANNNNTTC 1 cut(s) 1013
AspLEI GCGC 2 cut(s) 698, 995
AsuHPI GGTGA 2 cut(s) 145, 815
AsuII TTCGAA 1 cut(s) 1202
AvaI CYCGRG 1 cut(s) 371
BalI TGGCCA 1 cut(s) 408
BbvI GCAGC 6 cut(s) 79, 559, 691, 848, 1132, 1357
BccI CCATC 6 cut(s) 104, 709, 800, 967, 1046, 1108
BceAI ACGGC 1 cut(s) 477
BciT130I CCWGG 4 cut(s) 282, 674, 873, 1335
BclI TGATCA 1 cut(s) 880
BcoDI GTCTC 3 cut(s) 250, 1174, 1386
BfaI CTAG 2 cut(s) 45, 656
BfmI CTRYAG 3 cut(s) 597, 957, 1036
BglII AGATCT 1 cut(s) 1369
BisI GCNGC 6 cut(s) 93, 573, 680, 837, 1146, 1346
BlsI GCNGC 6 cut(s) 94, 574, 681, 838, 1147, 1347
Bme1390I CCNGG 4 cut(s) 282, 674, 873, 1335
BmeT110I CYCGRG 1 cut(s) 371
BmgBI CACGTC 1 cut(s) 878
BmiI GGNNCC 1 cut(s) 378
BmrFI CCNGG 4 cut(s) 282, 674, 873, 1335
BmsI GCATC 3 cut(s) 192, 325, 394
BplI GAGNNNNNCTC 4 cut(s) 230, 262, 1062, 1094
BpmI CTGGAG 2 cut(s) 656, 742
Bpu10I CCTNAGC 1 cut(s) 381
Bpu14I TTCGAA 1 cut(s) 1202
BpuEI CTTGAG 4 cut(s) 254, 564, 776, 1064
BsaHI GRCGYC 2 cut(s) 618, 1292
BsaJI CCNNGG 4 cut(s) 53, 140, 871, 966
BsaWI WCCGGW 1 cut(s) 1182
BsaXI ACNNNNNCTCC 2 cut(s) 1253, 1283
Bse118I RCCGGY 1 cut(s) 1182
Bse1I ACTGG 1 cut(s) 226
Bse3DI GCAATG 3 cut(s) 24, 360, 613
BseBI CCWGG 4 cut(s) 282, 674, 873, 1335
BseDI CCNNGG 4 cut(s) 53, 140, 871, 966
BseMI GCAATG 3 cut(s) 24, 360, 613
BseMII CTCAG 1 cut(s) 372
BseNI ACTGG 1 cut(s) 226
BseRI GAGGAG 2 cut(s) 251, 389
BseXI GCAGC 6 cut(s) 79, 559, 691, 848, 1132, 1357
BseYI CCCAGC 1 cut(s) 926
Bsh1236I CGCG 1 cut(s) 995
BshFI GGCC 2 cut(s) 408, 492
BshTI ACCGGT 1 cut(s) 1182
BsiHKCI CYCGRG 1 cut(s) 371
BsiSI CCGG 1 cut(s) 1183
BsmAI GTCTC 3 cut(s) 250, 1174, 1386
BsnI GGCC 2 cut(s) 408, 492
BsoBI CYCGRG 1 cut(s) 371
Bsp119I TTCGAA 1 cut(s) 1202
Bsp1407I TGTACA 1 cut(s) 947
Bsp143I GATC 4 cut(s) 825, 880, 1174, 1369
Bsp19I CCATGG 2 cut(s) 53, 140
BspACI CCGC 1 cut(s) 223
BspANI GGCC 2 cut(s) 408, 492
BspCNI CTCAG 1 cut(s) 373
BspFNI CGCG 1 cut(s) 995
BspLI GGNNCC 1 cut(s) 378
BspMAI CTGCAG 2 cut(s) 961, 1040
BspT104I TTCGAA 1 cut(s) 1202
BsrDI GCAATG 3 cut(s) 24, 360, 613
BsrFI RCCGGY 1 cut(s) 1182
BsrGI TGTACA 1 cut(s) 947
BsrI ACTGG 1 cut(s) 226
BssAI RCCGGY 1 cut(s) 1182
BssECI CCNNGG 4 cut(s) 53, 140, 871, 966
BssMI GATC 4 cut(s) 825, 880, 1174, 1369
BssNI GRCGYC 2 cut(s) 618, 1292
BssT1I CCWWGG 3 cut(s) 53, 140, 966
Bst2UI CCWGG 4 cut(s) 282, 674, 873, 1335
Bst4CI ACNGT 4 cut(s) 803, 859, 1026, 1158
Bst6I CTCTTC 4 cut(s) 89, 345, 816, 1350
BstACI GRCGYC 2 cut(s) 618, 1292
BstAPI GCANNNNNTGC 2 cut(s) 362, 546
BstAUI TGTACA 1 cut(s) 947
BstBI TTCGAA 1 cut(s) 1202
BstC8I GCNNGC 2 cut(s) 1343, 1412
BstDEI CTNAG 2 cut(s) 381, 423
BstDSI CCRYGG 2 cut(s) 53, 140
BstFNI CGCG 1 cut(s) 995
BstHHI GCGC 2 cut(s) 698, 995
BstKTI GATC 4 cut(s) 828, 883, 1177, 1372
BstMAI GTCTC 3 cut(s) 250, 1174, 1386
BstMBI GATC 4 cut(s) 825, 880, 1174, 1369
BstMWI GCNNNNNNNGC 7 cut(s) 101, 163, 362, 546, 676, 1123, 1325
BstNI CCWGG 4 cut(s) 282, 674, 873, 1335
BstSCI CCNGG 4 cut(s) 280, 672, 871, 1333
BstSFI CTRYAG 3 cut(s) 597, 957, 1036
BstUI CGCG 1 cut(s) 995
BstV1I GCAGC 6 cut(s) 79, 559, 691, 848, 1132, 1357
BstX2I RGATCY 1 cut(s) 1369
BstYI RGATCY 1 cut(s) 1369
BsuRI GGCC 2 cut(s) 408, 492
BtgI CCRYGG 2 cut(s) 53, 140
BtgZI GCGATG 2 cut(s) 986, 1086
BtrI CACGTC 1 cut(s) 878
BtsIMutI CAGTG 1 cut(s) 233
Cac8I GCNNGC 2 cut(s) 1343, 1412
CfoI GCGC 2 cut(s) 698, 995
Cfr10I RCCGGY 1 cut(s) 1182
CseI GACGC 3 cut(s) 607, 1218, 1281
Csp6I GTAC 3 cut(s) 449, 733, 948
CspAI ACCGGT 1 cut(s) 1182
CviAII CATG 7 cut(s) 54, 141, 393, 404, 614, 1127, 1137
CviQI GTAC 3 cut(s) 449, 733, 948
DdeI CTNAG 2 cut(s) 381, 423
DpnI GATC 4 cut(s) 827, 882, 1176, 1371
DpnII GATC 4 cut(s) 825, 880, 1174, 1369
DrdI GACNNNNNNGTC 1 cut(s) 365
DseDI GACNNNNNNGTC 1 cut(s) 365
EaeI YGGCCR 1 cut(s) 406
Eam1104I CTCTTC 4 cut(s) 89, 345, 816, 1350
EarI CTCTTC 4 cut(s) 89, 345, 816, 1350
EciI GGCGGA 1 cut(s) 212
Eco130I CCWWGG 3 cut(s) 53, 140, 966
Eco57I CTGAAG 1 cut(s) 840
Eco88I CYCGRG 1 cut(s) 371
EcoRII CCWGG 4 cut(s) 280, 672, 871, 1333
EcoT14I CCWWGG 3 cut(s) 53, 140, 966
ErhI CCWWGG 3 cut(s) 53, 140, 966
FaeI CATG 7 cut(s) 57, 144, 396, 407, 617, 1130, 1140
FatI CATG 7 cut(s) 53, 140, 392, 403, 613, 1126, 1136
FbaI TGATCA 1 cut(s) 880
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 6 cut(s) 93, 573, 680, 837, 1146, 1346
Fsp4HI GCNGC 6 cut(s) 93, 573, 680, 837, 1146, 1346
FspBI CTAG 2 cut(s) 45, 656
GlaI GCGC 2 cut(s) 697, 994
GluI GCNGC 6 cut(s) 93, 573, 680, 837, 1146, 1346
GsaI CCCAGC 1 cut(s) 930
GsuI CTGGAG 2 cut(s) 656, 742
HaeIII GGCC 2 cut(s) 408, 492
HapII CCGG 1 cut(s) 1183
HgaI GACGC 3 cut(s) 607, 1218, 1281
HhaI GCGC 2 cut(s) 698, 995
Hin1I GRCGYC 2 cut(s) 618, 1292
Hin1II CATG 7 cut(s) 57, 144, 396, 407, 617, 1130, 1140
Hin6I GCGC 2 cut(s) 696, 993
HinP1I GCGC 2 cut(s) 696, 993
HincII GTYRAC 1 cut(s) 622
HindII GTYRAC 1 cut(s) 622
HindIII AAGCTT 4 cut(s) 164, 213, 1305, 1339
HinfI GANTC 8 cut(s) 136, 243, 444, 577, 815, 890, 997, 1199
HpaII CCGG 1 cut(s) 1183
HphI GGTGA 2 cut(s) 145, 815
Hpy166II GTNNAC 5 cut(s) 172, 451, 622, 868, 948
Hpy188I TCNGA 5 cut(s) 205, 334, 820, 1174, 1179
Hpy188III TCNNGA 7 cut(s) 344, 581, 635, 721, 1191, 1296, 1311
Hpy8I GTNNAC 5 cut(s) 172, 451, 622, 868, 948
HpyAV CCTTC 2 cut(s) 694, 1404
HpyCH4III ACNGT 4 cut(s) 803, 859, 1026, 1158
HpyCH4IV ACGT 6 cut(s) 128, 271, 435, 471, 877, 939
HpyCH4V TGCA 5 cut(s) 104, 606, 959, 1038, 1345
HpyF10VI GCNNNNNNNGC 7 cut(s) 101, 163, 362, 546, 676, 1123, 1325
HpyF3I CTNAG 2 cut(s) 381, 423
HpySE526I ACGT 6 cut(s) 128, 271, 435, 471, 877, 939
Hsp92I GRCGYC 2 cut(s) 618, 1292
Hsp92II CATG 7 cut(s) 57, 144, 396, 407, 617, 1130, 1140
HspAI GCGC 2 cut(s) 696, 993
Ksp22I TGATCA 1 cut(s) 880
Kzo9I GATC 4 cut(s) 825, 880, 1174, 1369
LmnI GCTCC 6 cut(s) 16, 376, 675, 676, 723, 739
Lsp1109I GCAGC 6 cut(s) 79, 559, 691, 848, 1132, 1357
LweI GCATC 3 cut(s) 192, 325, 394
MaeI CTAG 2 cut(s) 45, 656
MaeII ACGT 6 cut(s) 128, 271, 435, 471, 877, 939
MaeIII GTNAC 1 cut(s) 124
MalI GATC 4 cut(s) 827, 882, 1176, 1371
MboI GATC 4 cut(s) 825, 880, 1174, 1369
MboII GAAGA 7 cut(s) 76, 305, 362, 833, 1009, 1227, 1367
MflI RGATCY 1 cut(s) 1369
MlsI TGGCCA 1 cut(s) 408
MluCI AATT 2 cut(s) 629, 639
MluNI TGGCCA 1 cut(s) 408
MlyI GAGTC 4 cut(s) 252, 571, 809, 884
MnlI CCTC 9 cut(s) 90, 229, 346, 367, 380, 521, 781, 805, 1255
Mox20I TGGCCA 1 cut(s) 408
MroXI GAANNNNTTC 1 cut(s) 1013
MscI TGGCCA 1 cut(s) 408
MseI TTAA 5 cut(s) 75, 474, 521, 747, 861
MslI CAYNNNNRTG 1 cut(s) 131
Msp20I TGGCCA 1 cut(s) 408
MspI CCGG 1 cut(s) 1183
MspR9I CCNGG 4 cut(s) 282, 674, 873, 1335
MvaI CCWGG 4 cut(s) 282, 674, 873, 1335
MvnI CGCG 1 cut(s) 995
MwoI GCNNNNNNNGC 7 cut(s) 101, 163, 362, 546, 676, 1123, 1325
NcoI CCATGG 2 cut(s) 53, 140
NdeII GATC 4 cut(s) 825, 880, 1174, 1369
NlaIII CATG 7 cut(s) 57, 144, 396, 407, 617, 1130, 1140
NlaIV GGNNCC 1 cut(s) 378
NmeAIII GCCGAG 1 cut(s) 805
NmuCI GTSAC 1 cut(s) 124
NspV TTCGAA 1 cut(s) 1202
OliI CACNNNNGTG 1 cut(s) 131
PaeR7I CTCGAG 1 cut(s) 371
PdmI GAANNNNTTC 1 cut(s) 1013
PfeI GAWTC 4 cut(s) 136, 444, 997, 1199
PfoI TCCNGGA 2 cut(s) 280, 672
PinAI ACCGGT 1 cut(s) 1182
PkrI GCNGC 6 cut(s) 94, 574, 681, 838, 1147, 1347
PleI GAGTC 4 cut(s) 251, 571, 809, 884
PpsI GAGTC 4 cut(s) 251, 571, 809, 884
PsiI TTATAA 1 cut(s) 1163
Psp6I CCWGG 4 cut(s) 280, 672, 871, 1333
PspFI CCCAGC 1 cut(s) 926
PspGI CCWGG 4 cut(s) 280, 672, 871, 1333
PspN4I GGNNCC 1 cut(s) 378
PspXI VCTCGAGB 1 cut(s) 371
PstI CTGCAG 2 cut(s) 961, 1040
PsuI RGATCY 1 cut(s) 1369
RsaI GTAC 3 cut(s) 450, 734, 949
RsaNI GTAC 3 cut(s) 449, 733, 948
RseI CAYNNNNRTG 1 cut(s) 131
SaqAI TTAA 5 cut(s) 75, 474, 521, 747, 861
SatI GCNGC 6 cut(s) 93, 573, 680, 837, 1146, 1346
Sau3AI GATC 4 cut(s) 825, 880, 1174, 1369
SchI GAGTC 4 cut(s) 252, 571, 809, 884
ScrFI CCNGG 4 cut(s) 282, 674, 873, 1335
SfaNI GCATC 3 cut(s) 192, 325, 394
SfcI CTRYAG 3 cut(s) 597, 957, 1036
Sfr274I CTCGAG 1 cut(s) 371
SfuI TTCGAA 1 cut(s) 1202
SlaI CTCGAG 1 cut(s) 371
SmiMI CAYNNNNRTG 1 cut(s) 131
SmlI CTYRAG 5 cut(s) 233, 371, 579, 755, 1079
SmoI CTYRAG 5 cut(s) 233, 371, 579, 755, 1079
Sse9I AATT 2 cut(s) 629, 639
SsiI CCGC 1 cut(s) 223
SspMI CTAG 2 cut(s) 45, 656
StyD4I CCNGG 4 cut(s) 280, 672, 871, 1333
StyI CCWWGG 3 cut(s) 53, 140, 966
TaaI ACNGT 4 cut(s) 803, 859, 1026, 1158
TaiI ACGT 6 cut(s) 131, 274, 438, 474, 880, 942
TaqI TCGA 6 cut(s) 372, 636, 849, 1007, 1202, 1238
TasI AATT 2 cut(s) 629, 639
TatI WGTACW 1 cut(s) 947
TfiI GAWTC 4 cut(s) 136, 444, 997, 1199
Tru1I TTAA 5 cut(s) 75, 474, 521, 747, 861
Tru9I TTAA 5 cut(s) 75, 474, 521, 747, 861
TscAI CASTG 1 cut(s) 233
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 6 cut(s) 92, 572, 679, 836, 1145, 1345
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 6 cut(s) 363, 389, 602, 1143, 1271, 1368
TspGWI ACGGA 1 cut(s) 77
TspRI CASTG 1 cut(s) 233
XapI RAATTY 1 cut(s) 629
XhoI CTCGAG 1 cut(s) 371
XmiI GTMKAC 1 cut(s) 171
XmnI GAANNNNTTC 1 cut(s) 1013
XspI CTAG 2 cut(s) 45, 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.