Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008840.1

Orthogroup ID

OG0005681

Physical Location & Seq

Genomic Coordinates Reverse (-)

75232 .. 77768

Gene Structure 2537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008840.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

atggataaaaagaggcatattgtgatttttaccactgcaagccttccatggatgaccggaactgctgtcaaccctttgttccgtgcagcgtatcttgcaaaagatggggagaggattgttagtttggtcattccttggttatctttgaaagatcaaaaactggtgtatcccaacaacatcacatttagctcaccggcagagcaagaggcttatatccgtcactggcttcatgagaggactggatttgaatctgatttcagtatacttttttatcctggaaaggtaatcagattatctgctgccacccaggagtatcctcaatcgatcatttgcaatgttcatggtgtcaaccccaagtttctggaaataggcaagaaaaagctagagcagcaacaaaatggaagccaagccttcagcaaaggtgcctactacattgggaaaatggtgtggagtaaaggctacaaggagctgctgaaacttgttcaagaccatcaaaaggaattagctggacttgaggttgatttatatggaactggggaagactctgatcaagttcgggaagctgctgaaaaactggaaccggctgttagagtccatcctgggcgtgatcatgctgatcttgaatttcatgattataaagtgttcctgaatccaagcaccacagatgtggtttgcacgaccacagcagaagcattggcaatgggtaaaattgttgtgtgcgccaatcacccctcgaatgacttcttcaagcagttcccaaattgccgaacatatgacaatggtgatgggtttgtcaagctcacacagcaagcactggctgaacagcctgcgcagcttactgaggcacaaaggtatgagctttcatgggcggctgccaccgaacggtttttaaggtgtgctgagctagaaaaggcatcgacagcgaaactggcagaatctccctcaaagaactttatgtctacgtcattgaacttggggggtaagatggaaactgcatctgcatatgtgcatcatgtgacatctggttttgaagtaacgcggaggatttttggtgcgatcccaaggagtttgcaaccagatgaagagcaatgcaaggagcttgggctggctgttcctgctggcaagcaaggctccggaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006643 GO:0006664 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008610 GO:0009058 GO:0009247 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0009987 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019375 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0035250 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1901137 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_trans_1_4 Glycos_transf_1

Protein Analysis

380

Amino Acids

42.41

Weight (kDa)

6.84

Isoelectric Point (pI)

34.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00550 AT4G00550
fragaria_vesca	FvH4_7g13530
malus_domestica	MD01G1048600.v1.1 MD07G1125900.v1.1
prunus_persica	Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1
pyrus_communis	pycom01g07380 pycom07g12000
rosa_chinensis	RchiOBHm_Chr1g0353091
rosa_laevigata	RLG00000028291
rosa_multiflora	Rmu_co8051134.1_g000001 Rmu_sc0001207.1_g000084 Rmu_sc0008840.1_g000014
rosa_roxburghii	Rroxscaffold_4G00302070
rosa_rugosa	Rorug01G0233600 Rorug01G0233600
rosa_samantha	Rh1AG247200 Rh1BG217100 Rh1CG230800 Rh1DG243200
rosa_wichuraiana	Rw0G018110 Rw1G021370 Rw1G021500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	636
Acc16I	TGCGCA	1 cut(s)	831
AccB1I	GGYRCC	1 cut(s)	422
AccI	GTMKAC	2 cut(s)	262, 959
AccII	CGCG	1 cut(s)	1039
AccIII	TCCGGA	1 cut(s)	1133
AciI	CCGC	2 cut(s)	869, 1039
AclWI	GGATC	1 cut(s)	1051
AcsI	RAATTY	1 cut(s)	623
AcuI	CTGAAG	1 cut(s)	397
AfiI	CCNNNNNNNGG	2 cut(s)	496, 882
AgsI	TTSAA	7 cut(s)	148, 248, 485, 623, 748, 970, 1031
AjnI	CCWGG	3 cut(s)	274, 306, 598
AleI	CACNNNNGTG	1 cut(s)	665
AlwI	GGATC	1 cut(s)	1051
Aor13HI	TCCGGA	1 cut(s)	1133
ApeKI	GCWGC	7 cut(s)	86, 299, 388, 469, 563, 832, 872
ApoI	RAATTY	1 cut(s)	623
Asp700I	GAANNNNTTC	1 cut(s)	740
AspLEI	GCGC	2 cut(s)	722, 832
AsuHPI	GGTGA	3 cut(s)	183, 719, 794
BaeI	ACNNNNGTAYC	2 cut(s)	149, 182
BanI	GGYRCC	1 cut(s)	422
BbsI	GAAGAC	1 cut(s)	546
BbvI	GCAGC	7 cut(s)	98, 286, 400, 456, 550, 844, 859
BccI	CCATC	5 cut(s)	98, 498, 603, 779, 979
BciT130I	CCWGG	3 cut(s)	276, 308, 600
BciVI	GTATCC	2 cut(s)	177, 324
BclI	TGATCA	2 cut(s)	547, 607
BfaI	CTAG	2 cut(s)	383, 905
BfuI	GTATCC	2 cut(s)	177, 324
BisI	GCNGC	8 cut(s)	87, 300, 389, 470, 564, 833, 870, 873
BlpI	GCTNAGC	1 cut(s)	900
BlsI	GCNGC	8 cut(s)	88, 301, 390, 471, 565, 834, 871, 874
Bme1390I	CCNGG	3 cut(s)	276, 308, 600
BmiI	GGNNCC	3 cut(s)	424, 579, 1132
BmrFI	CCNGG	3 cut(s)	276, 308, 600
BmrI	ACTGGG	1 cut(s)	543
BmsI	GCATC	3 cut(s)	923, 1004, 1018
BmuI	ACTGGG	1 cut(s)	543
BpiI	GAAGAC	1 cut(s)	546
Bpu1102I	GCTNAGC	1 cut(s)	900
BpuEI	CTTGAG	1 cut(s)	533
Bsa29I	ATCGAT	1 cut(s)	323
BsaBI	GATNNNNATC	1 cut(s)	247
BsaJI	CCNNGG	5 cut(s)	47, 134, 306, 599, 1061
BsaWI	WCCGGW	2 cut(s)	56, 1133
Bsc4I	CCNNNNNNNGG	2 cut(s)	496, 882
Bse118I	RCCGGY	2 cut(s)	193, 580
Bse1I	ACTGG	7 cut(s)	165, 227, 244, 538, 579, 819, 933
Bse3DI	GCAATG	3 cut(s)	340, 705, 1094
Bse8I	GATNNNNATC	1 cut(s)	247
BseAI	TCCGGA	1 cut(s)	1133
BseBI	CCWGG	3 cut(s)	276, 308, 600
BseCI	ATCGAT	1 cut(s)	323
BseDI	CCNNGG	5 cut(s)	47, 134, 306, 599, 1061
BseGI	GGATG	2 cut(s)	57, 595
BseJI	GATNNNNATC	1 cut(s)	247
BseLI	CCNNNNNNNGG	2 cut(s)	496, 882
BseMI	GCAATG	3 cut(s)	340, 705, 1094
BseMII	CTCAG	2 cut(s)	831, 891
BseNI	ACTGG	7 cut(s)	165, 227, 244, 538, 579, 819, 933
BseXI	GCAGC	7 cut(s)	98, 286, 400, 456, 550, 844, 859
BsgI	GTGCAG	1 cut(s)	105
Bsh1236I	CGCG	1 cut(s)	1039
BshNI	GGYRCC	1 cut(s)	422
BshVI	ATCGAT	1 cut(s)	323
BsiSI	CCGG	4 cut(s)	57, 194, 581, 1134
BslI	CCNNNNNNNGG	2 cut(s)	496, 882
Bsp13I	TCCGGA	1 cut(s)	1133
Bsp143I	GATC	6 cut(s)	151, 324, 547, 607, 616, 1056
Bsp1720I	GCTNAGC	1 cut(s)	900
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	2 cut(s)	869, 1039
BspCNI	CTCAG	2 cut(s)	832, 892
BspDI	ATCGAT	1 cut(s)	323
BspEI	TCCGGA	1 cut(s)	1133
BspFNI	CGCG	1 cut(s)	1039
BspHI	TCATGA	2 cut(s)	229, 628
BspLI	GGNNCC	3 cut(s)	424, 579, 1132
BspPI	GGATC	1 cut(s)	1051
BspQI	GCTCTTC	1 cut(s)	1077
BspT107I	GGYRCC	1 cut(s)	422
BsrDI	GCAATG	3 cut(s)	340, 705, 1094
BsrFI	RCCGGY	2 cut(s)	193, 580
BsrI	ACTGG	7 cut(s)	165, 227, 244, 538, 579, 819, 933
BssAI	RCCGGY	2 cut(s)	193, 580
BssECI	CCNNGG	5 cut(s)	47, 134, 306, 599, 1061
BssMI	GATC	6 cut(s)	151, 324, 547, 607, 616, 1056
BssNAI	GTATAC	1 cut(s)	263
BssT1I	CCWWGG	3 cut(s)	47, 134, 1061
Bst1107I	GTATAC	1 cut(s)	263
Bst2UI	CCWGG	3 cut(s)	276, 308, 600
Bst4CI	ACNGT	1 cut(s)	885
Bst6I	CTCTTC	1 cut(s)	1077
BstC8I	GCNNGC	6 cut(s)	40, 810, 828, 1107, 1120, 1124
BstDEI	CTNAG	2 cut(s)	840, 900
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	2 cut(s)	57, 595
BstFNI	CGCG	1 cut(s)	1039
BstHHI	GCGC	2 cut(s)	722, 832
BstKTI	GATC	6 cut(s)	154, 327, 550, 610, 619, 1059
BstMBI	GATC	6 cut(s)	151, 324, 547, 607, 616, 1056
BstMWI	GCNNNNNNNGC	8 cut(s)	95, 388, 805, 832, 920, 929, 1115, 1128
BstNI	CCWGG	3 cut(s)	276, 308, 600
BstSCI	CCNGG	3 cut(s)	274, 306, 598
BstUI	CGCG	1 cut(s)	1039
BstV1I	GCAGC	7 cut(s)	98, 286, 400, 456, 550, 844, 859
BstV2I	GAAGAC	1 cut(s)	546
BstXI	CCANNNNNNTGG	2 cut(s)	361, 667
BstZ17I	GTATAC	1 cut(s)	263
Bsu15I	ATCGAT	1 cut(s)	323
BsuI	GTATCC	2 cut(s)	177, 324
BsuTUI	ATCGAT	1 cut(s)	323
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	57, 595
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	3 cut(s)	33, 220, 812
Cac8I	GCNNGC	6 cut(s)	40, 810, 828, 1107, 1120, 1124
CciI	TCATGA	2 cut(s)	229, 628
CfoI	GCGC	2 cut(s)	722, 832
Cfr10I	RCCGGY	2 cut(s)	193, 580
ClaI	ATCGAT	1 cut(s)	323
CviAII	CATG	7 cut(s)	48, 230, 341, 611, 629, 864, 1013
DdeI	CTNAG	2 cut(s)	840, 900
DpnI	GATC	6 cut(s)	153, 326, 549, 609, 618, 1058
DpnII	GATC	6 cut(s)	151, 324, 547, 607, 616, 1056
Eam1104I	CTCTTC	1 cut(s)	1077
EarI	CTCTTC	1 cut(s)	1077
Eco130I	CCWWGG	3 cut(s)	47, 134, 1061
Eco57I	CTGAAG	1 cut(s)	397
EcoRII	CCWGG	3 cut(s)	274, 306, 598
EcoT14I	CCWWGG	3 cut(s)	47, 134, 1061
ErhI	CCWWGG	3 cut(s)	47, 134, 1061
FaeI	CATG	7 cut(s)	51, 233, 344, 614, 632, 867, 1016
FatI	CATG	7 cut(s)	47, 229, 340, 610, 628, 863, 1012
FauNDI	CATATG	2 cut(s)	772, 1003
FbaI	TGATCA	2 cut(s)	547, 607
FblI	GTMKAC	2 cut(s)	262, 959
Fnu4HI	GCNGC	8 cut(s)	87, 300, 389, 470, 564, 833, 870, 873
FokI	GGATG	2 cut(s)	64, 582
Fsp4HI	GCNGC	8 cut(s)	87, 300, 389, 470, 564, 833, 870, 873
FspBI	CTAG	2 cut(s)	383, 905
FspI	TGCGCA	1 cut(s)	831
GlaI	GCGC	2 cut(s)	721, 831
GluI	GCNGC	8 cut(s)	87, 300, 389, 470, 564, 833, 870, 873
HapII	CCGG	4 cut(s)	57, 194, 581, 1134
HhaI	GCGC	2 cut(s)	722, 832
Hin1II	CATG	7 cut(s)	51, 233, 344, 614, 632, 867, 1016
Hin6I	GCGC	2 cut(s)	720, 830
HinP1I	GCGC	2 cut(s)	720, 830
HincII	GTYRAC	2 cut(s)	70, 349
HindII	GTYRAC	2 cut(s)	70, 349
HinfI	GANTC	5 cut(s)	248, 542, 591, 649, 935
HpaII	CCGG	4 cut(s)	57, 194, 581, 1134
HphI	GGTGA	3 cut(s)	183, 719, 794
Hpy166II	GTNNAC	4 cut(s)	70, 263, 349, 960
Hpy188I	TCNGA	3 cut(s)	253, 290, 547
Hpy188III	TCNNGA	8 cut(s)	230, 362, 485, 557, 620, 629, 646, 1134
Hpy8I	GTNNAC	4 cut(s)	70, 263, 349, 960
HpyAV	CCTTC	2 cut(s)	53, 421
HpyCH4III	ACNGT	1 cut(s)	885
HpyCH4IV	ACGT	1 cut(s)	962
HpyF10VI	GCNNNNNNNGC	8 cut(s)	95, 388, 805, 832, 920, 929, 1115, 1128
HpyF3I	CTNAG	2 cut(s)	840, 900
HpySE526I	ACGT	1 cut(s)	962
Hsp92II	CATG	7 cut(s)	51, 233, 344, 614, 632, 867, 1016
HspAI	GCGC	2 cut(s)	720, 830
Kpn2I	TCCGGA	1 cut(s)	1133
Ksp22I	TGATCA	2 cut(s)	547, 607
Kzo9I	GATC	6 cut(s)	151, 324, 547, 607, 616, 1056
LguI	GCTCTTC	1 cut(s)	1077
LmnI	GCTCC	3 cut(s)	466, 1096, 1136
Lsp1109I	GCAGC	7 cut(s)	98, 286, 400, 456, 550, 844, 859
LweI	GCATC	3 cut(s)	923, 1004, 1018
MaeI	CTAG	2 cut(s)	383, 905
MaeII	ACGT	1 cut(s)	962
MaeIII	GTNAC	3 cut(s)	218, 1015, 1033
MalI	GATC	6 cut(s)	153, 326, 549, 609, 618, 1058
MboI	GATC	6 cut(s)	151, 324, 547, 607, 616, 1056
MboII	GAAGA	3 cut(s)	551, 736, 1094
MluCI	AATT	4 cut(s)	500, 623, 708, 760
MlyI	GAGTC	2 cut(s)	536, 600
MroI	TCCGGA	1 cut(s)	1133
MroXI	GAANNNNTTC	1 cut(s)	740
MseI	TTAA	1 cut(s)	890
MslI	CAYNNNNRTG	1 cut(s)	665
MspI	CCGG	4 cut(s)	57, 194, 581, 1134
MspR9I	CCNGG	3 cut(s)	276, 308, 600
MvaI	CCWGG	3 cut(s)	276, 308, 600
MvnI	CGCG	1 cut(s)	1039
MwoI	GCNNNNNNNGC	8 cut(s)	95, 388, 805, 832, 920, 929, 1115, 1128
NcoI	CCATGG	1 cut(s)	47
NdeI	CATATG	2 cut(s)	772, 1003
NdeII	GATC	6 cut(s)	151, 324, 547, 607, 616, 1056
NlaIII	CATG	7 cut(s)	51, 233, 344, 614, 632, 867, 1016
NlaIV	GGNNCC	3 cut(s)	424, 579, 1132
NmuCI	GTSAC	2 cut(s)	218, 1015
NsbI	TGCGCA	1 cut(s)	831
OliI	CACNNNNGTG	1 cut(s)	665
PagI	TCATGA	2 cut(s)	229, 628
PciSI	GCTCTTC	1 cut(s)	1077
PdmI	GAANNNNTTC	1 cut(s)	740
PfeI	GAWTC	3 cut(s)	248, 649, 935
PfoI	TCCNGGA	1 cut(s)	274
PkrI	GCNGC	8 cut(s)	88, 301, 390, 471, 565, 834, 871, 874
PleI	GAGTC	2 cut(s)	536, 599
PpsI	GAGTC	2 cut(s)	536, 599
PsiI	TTATAA	1 cut(s)	636
Psp6I	CCWGG	3 cut(s)	274, 306, 598
PspGI	CCWGG	3 cut(s)	274, 306, 598
PspN4I	GGNNCC	3 cut(s)	424, 579, 1132
RseI	CAYNNNNRTG	1 cut(s)	665
SapI	GCTCTTC	1 cut(s)	1077
SaqAI	TTAA	1 cut(s)	890
SatI	GCNGC	8 cut(s)	87, 300, 389, 470, 564, 833, 870, 873
Sau3AI	GATC	6 cut(s)	151, 324, 547, 607, 616, 1056
SchI	GAGTC	2 cut(s)	536, 600
ScrFI	CCNGG	3 cut(s)	276, 308, 600
SfaNI	GCATC	3 cut(s)	923, 1004, 1018
SmiMI	CAYNNNNRTG	1 cut(s)	665
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	4 cut(s)	500, 623, 708, 760
SsiI	CCGC	2 cut(s)	869, 1039
SspMI	CTAG	2 cut(s)	383, 905
StyD4I	CCNGG	3 cut(s)	274, 306, 598
StyI	CCWWGG	3 cut(s)	47, 134, 1061
TaaI	ACNGT	1 cut(s)	885
TaiI	ACGT	1 cut(s)	965
TaqI	TCGA	3 cut(s)	323, 734, 917
TasI	AATT	4 cut(s)	500, 623, 708, 760
TauI	GCSGC	1 cut(s)	872
TfiI	GAWTC	3 cut(s)	248, 649, 935
Tru1I	TTAA	1 cut(s)	890
Tru9I	TTAA	1 cut(s)	890
TscAI	CASTG	3 cut(s)	40, 227, 819
TseFI	GTSAC	2 cut(s)	218, 1015
TseI	GCWGC	7 cut(s)	86, 299, 388, 469, 563, 832, 872
Tsp45I	GTSAC	2 cut(s)	218, 1015
TspDTI	ATGAA	5 cut(s)	218, 329, 617, 852, 1095
TspGWI	ACGGA	2 cut(s)	71, 206
TspRI	CASTG	3 cut(s)	40, 227, 819
XapI	RAATTY	1 cut(s)	623
XmiI	GTMKAC	2 cut(s)	262, 959
XmnI	GAANNNNTTC	1 cut(s)	740
XspI	CTAG	2 cut(s)	383, 905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.