Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005681

Physical Location & Seq

Genomic Coordinates Reverse (-)

21186397 .. 21191733

Gene Structure 5337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G159400.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1446 bp

ATGGATAAGAAGCGGCAAATTGCGATATTCACTACTGCAAGCCTTCCATGGATGACTGGAACTGCAGTCAACCCTCTATTCCGTGCAGCCTATCTTGGAAAAGACGGGGAGAGAATCGTCACTTTGGTCATTCCTTGGTTATCATTGAAAGACCAAAAACTAGTATATCCCAACAACATCACGTTCAGCTCACCAGCAGAGCAGGAGACTTATGTCCGTCACTGGGTTGATGAGAGGACTGGATTCAAATCTGACTTTGGTATACTTTTTTATCCTGGAAAGTTTTCTTTAGATAAAAGGAGCATTCTTGCTGTTGGAGATATTTCGGAAAGAATCCCTGATGAAAAAGCAGATATTGCCATCCTCGAGGAGCCAGAGCACCTTACGTGGTATCATCATGGGAAGAGATGGAAAATTAAATTTCGGCTCGTTGTAGGAATTGTGCATACTAATTATTTGGAATATGTGAGAAGGGAGAAGAATGGAAGAATGCAAGCATTTCTTCTAAAATATATTAATAATTGGGTTGTCAGTATATATTGTCACAAGGTAATCAGATTATCTGCTGCCACCCAGGATTATCCTAAATCCATAATTTGCAATGTTCATGGAGTCAACCCCAAGTTTCTTGAGATAGGCAAGAAAAAGCTAGAGCAACAACAAAATGGAATCCAGGCCTTCACCAAAGGTGCCTACTACATTGGGAAGATGGTGTGGAGCAAAGGCTACAAGGAGCTACTCGAGCTTCTTCGTGATAATCAAAAGGAATTAACTGGACTTGAGGTCGATTTATATGGAACTGGGGAGGACTCTGATCAAGTTCAAGAAACTGCTAAAAGATTGGAACTGGCTGTTAGAGTCCACCCTGGACGTGACCATGCTGATCTTCTATTTCATGATTATAAAGTGTTTCTCAATCCAAGCACCACAGACGTGGTTTGCACCACCACGGCAGAAGCATTGGCAATGGGTAAAATTGTTGTATGTGCCAATCACCCCTCAAATGAATTCTTCAAGCAGTTCCCAAATTGCCGAACATATGACAATGGTGATGGGTTTGTTAAGCTCACACGGCATGCACTTGCTGAAGAGCCTGCCCAGCTGACTGATGCACAGAGGCATGAGCTTTCATGGGAGGCTGCCACAGAACGGTTTTTAAGGGTTACCGAGCTAGACCAGGAATTTACAAGGAAACTGTCAAAAAGTCCTACAAAGAACTTTATGTCTACATCATTGGGGCTATCGAGTAGCATGGAGGGTGCGTCGGCATATGTGCATCATGTGGCTTCTGGTTTTGAAGCAACACGAAGGATATTCGGTGCAATCCCAAAGAGTTTACAACCAGATGAAGAACAATGTAAGGAGCTTGGGCTGCCTATCCCTGCAGTTTCAGGACATGATTATTTGGCTACCGAGGAATCCAAATCAAGTGGTGTAGAAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006643 GO:0006664 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008610 GO:0009058 GO:0009247 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0009987 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019375 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0035250 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1901137 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_trans_1_4 Glycos_transf_1

Protein Analysis

482

Amino Acids

54.58

Weight (kDa)

7.27

Isoelectric Point (pI)

32.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00550 AT4G00550
fragaria_vesca	FvH4_7g13530
malus_domestica	MD01G1048600.v1.1 MD07G1125900.v1.1
prunus_persica	Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1
pyrus_communis	pycom01g07380 pycom07g12000
rosa_chinensis	RchiOBHm_Chr1g0353091
rosa_laevigata	RLG00000028291
rosa_multiflora	Rmu_co8051134.1_g000001 Rmu_sc0001207.1_g000084 Rmu_sc0008840.1_g000014
rosa_roxburghii	Rroxscaffold_4G00302070
rosa_rugosa	Rorug01G0233600 Rorug01G0233600
rosa_samantha	Rh1AG247200 Rh1BG217100 Rh1CG230800 Rh1DG243200
rosa_wichuraiana	Rw0G018110 Rw1G021370 Rw1G021500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	903
AbsI	CCTCGAGG	1 cut(s)	365
AccB1I	GGYRCC	1 cut(s)	689
AccI	GTMKAC	2 cut(s)	262, 1226
AciI	CCGC	1 cut(s)	13
AcsI	RAATTY	3 cut(s)	419, 1007, 1181
AcuI	CTGAAG	1 cut(s)	1107
AfiI	CCNNNNNNNGG	2 cut(s)	223, 1149
AgsI	TTSAA	5 cut(s)	148, 247, 824, 1015, 1298
AhdI	GACNNNNNGTC	1 cut(s)	782
AhlI	ACTAGT	1 cut(s)	160
AjiI	CACGTC	2 cut(s)	872, 934
AjnI	CCWGG	5 cut(s)	274, 573, 672, 865, 1176
AleI	CACNNNNGTG	1 cut(s)	932
AluBI	AGCT	9 cut(s)	189, 649, 736, 745, 1066, 1102, 1126, 1171, 1366
AluI	AGCT	9 cut(s)	189, 649, 736, 745, 1066, 1102, 1126, 1171, 1366
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	1 cut(s)	200
Ama87I	CYCGRG	2 cut(s)	365, 740
AoxI	GGCC	1 cut(s)	675
ApeKI	GCWGC	4 cut(s)	86, 566, 1139, 1372
ApoI	RAATTY	3 cut(s)	419, 1007, 1181
AseI	ATTAAT	1 cut(s)	516
Asp700I	GAANNNNTTC	1 cut(s)	283
AsuHPI	GGTGA	4 cut(s)	183, 673, 986, 1061
AvaI	CYCGRG	2 cut(s)	365, 740
BanI	GGYRCC	1 cut(s)	689
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	4 cut(s)	98, 553, 1126, 1359
BccI	CCATC	4 cut(s)	368, 402, 703, 1046
BceAI	ACGGC	2 cut(s)	966, 1088
BciT130I	CCWGG	5 cut(s)	276, 575, 674, 867, 1178
BclI	TGATCA	1 cut(s)	814
BcoDI	GTCTC	1 cut(s)	200
BcuI	ACTAGT	1 cut(s)	160
BfaI	CTAG	3 cut(s)	161, 650, 1172
BfmI	CTRYAG	2 cut(s)	63, 1383
BisI	GCNGC	5 cut(s)	14, 87, 567, 1140, 1373
BlsI	GCNGC	5 cut(s)	15, 88, 568, 1141, 1374
Bme1390I	CCNGG	5 cut(s)	276, 575, 674, 867, 1178
BmeRI	GACNNNNNGTC	1 cut(s)	782
BmeT110I	CYCGRG	2 cut(s)	365, 740
BmgBI	CACGTC	2 cut(s)	872, 934
BmiI	GGNNCC	2 cut(s)	372, 691
BmrFI	CCNGG	5 cut(s)	276, 575, 674, 867, 1178
BmrI	ACTGGG	2 cut(s)	232, 810
BmsI	GCATC	2 cut(s)	1099, 1285
BmuI	ACTGGG	2 cut(s)	232, 810
BoxI	GACNNNNGTC	1 cut(s)	212
BpuEI	CTTGAG	2 cut(s)	650, 800
BsaAI	YACGTR	1 cut(s)	387
BsaBI	GATNNNNATC	1 cut(s)	247
BsaJI	CCNNGG	6 cut(s)	47, 134, 573, 865, 948, 1413
BsaXI	ACNNNNNCTCC	2 cut(s)	1247, 1277
Bsc4I	CCNNNNNNNGG	2 cut(s)	223, 1149
Bse1I	ACTGG	6 cut(s)	61, 227, 244, 778, 805, 852
Bse3DI	GCAATG	2 cut(s)	607, 972
Bse8I	GATNNNNATC	1 cut(s)	247
BseBI	CCWGG	5 cut(s)	276, 575, 674, 867, 1178
BseDI	CCNNGG	6 cut(s)	47, 134, 573, 865, 948, 1413
BseGI	GGATG	2 cut(s)	57, 360
BseJI	GATNNNNATC	1 cut(s)	247
BseLI	CCNNNNNNNGG	2 cut(s)	223, 1149
BseMI	GCAATG	2 cut(s)	607, 972
BseNI	ACTGG	6 cut(s)	61, 227, 244, 778, 805, 852
BseRI	GAGGAG	1 cut(s)	383
BseXI	GCAGC	4 cut(s)	98, 553, 1126, 1359
BseYI	CCCAGC	1 cut(s)	1098
BsgI	GTGCAG	1 cut(s)	105
BshFI	GGCC	1 cut(s)	677
BshNI	GGYRCC	1 cut(s)	689
BsiHKAI	GWGCWC	1 cut(s)	381
BsiHKCI	CYCGRG	2 cut(s)	365, 740
BslI	CCNNNNNNNGG	2 cut(s)	223, 1149
BsmAI	GTCTC	1 cut(s)	200
BsmI	GAATGC	2 cut(s)	303, 495
BsnI	GGCC	1 cut(s)	677
BsoBI	CYCGRG	2 cut(s)	365, 740
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp143I	GATC	2 cut(s)	814, 883
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	1 cut(s)	13
BspANI	GGCC	1 cut(s)	677
BspHI	TCATGA	1 cut(s)	895
BspLI	GGNNCC	2 cut(s)	372, 691
BspMAI	CTGCAG	2 cut(s)	67, 1387
BspQI	GCTCTTC	1 cut(s)	1083
BspT107I	GGYRCC	1 cut(s)	689
BsrDI	GCAATG	2 cut(s)	607, 972
BsrI	ACTGG	6 cut(s)	61, 227, 244, 778, 805, 852
BssECI	CCNNGG	6 cut(s)	47, 134, 573, 865, 948, 1413
BssMI	GATC	2 cut(s)	814, 883
BssNAI	GTATAC	1 cut(s)	263
BssT1I	CCWWGG	2 cut(s)	47, 134
Bst1107I	GTATAC	1 cut(s)	263
Bst2UI	CCWGG	5 cut(s)	276, 575, 674, 867, 1178
Bst4CI	ACNGT	2 cut(s)	1152, 1197
Bst6I	CTCTTC	2 cut(s)	398, 1083
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstBAI	YACGTR	1 cut(s)	387
BstC8I	GCNNGC	4 cut(s)	40, 495, 1077, 1095
BstDSI	CCRYGG	2 cut(s)	47, 948
BstEII	GGTNACC	1 cut(s)	1162
BstF5I	GGATG	2 cut(s)	57, 360
BstKTI	GATC	2 cut(s)	817, 886
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	2 cut(s)	814, 883
BstMWI	GCNNNNNNNGC	5 cut(s)	356, 742, 1072, 1099, 1372
BstNI	CCWGG	5 cut(s)	276, 575, 674, 867, 1178
BstNSI	RCATGY	1 cut(s)	1079
BstPAI	GACNNNNGTC	1 cut(s)	212
BstPI	GGTNACC	1 cut(s)	1162
BstSCI	CCNGG	5 cut(s)	274, 573, 672, 865, 1176
BstSFI	CTRYAG	2 cut(s)	63, 1383
BstV1I	GCAGC	4 cut(s)	98, 553, 1126, 1359
BstXI	CCANNNNNNTGG	1 cut(s)	934
BstZ17I	GTATAC	1 cut(s)	263
BsuRI	GGCC	1 cut(s)	677
BtgI	CCRYGG	2 cut(s)	47, 948
BtrI	CACGTC	2 cut(s)	872, 934
BtsCI	GGATG	2 cut(s)	57, 360
BtsIMutI	CAGTG	1 cut(s)	220
Cac8I	GCNNGC	4 cut(s)	40, 495, 1077, 1095
CciI	TCATGA	1 cut(s)	895
CseI	GACGC	1 cut(s)	1251
CspCI	CAANNNNNGTGG	2 cut(s)	1411, 1446
DpnI	GATC	2 cut(s)	816, 885
DpnII	GATC	2 cut(s)	814, 883
DriI	GACNNNNNGTC	1 cut(s)	782
Eam1104I	CTCTTC	2 cut(s)	398, 1083
Eam1105I	GACNNNNNGTC	1 cut(s)	782
EarI	CTCTTC	2 cut(s)	398, 1083
Eco130I	CCWWGG	2 cut(s)	47, 134
Eco147I	AGGCCT	1 cut(s)	677
Eco57I	CTGAAG	1 cut(s)	1107
Eco88I	CYCGRG	2 cut(s)	365, 740
Eco91I	GGTNACC	1 cut(s)	1162
EcoO65I	GGTNACC	1 cut(s)	1162
EcoRI	GAATTC	1 cut(s)	1007
EcoRII	CCWGG	5 cut(s)	274, 573, 672, 865, 1176
EcoT14I	CCWWGG	2 cut(s)	47, 134
ErhI	CCWWGG	2 cut(s)	47, 134
FalI	AAGNNNNNCTT	2 cut(s)	486, 518
FauNDI	CATATG	2 cut(s)	1039, 1270
FbaI	TGATCA	1 cut(s)	814
FblI	GTMKAC	2 cut(s)	262, 1226
Fnu4HI	GCNGC	5 cut(s)	14, 87, 567, 1140, 1373
FokI	GGATG	2 cut(s)	64, 347
Fsp4HI	GCNGC	5 cut(s)	14, 87, 567, 1140, 1373
FspBI	CTAG	3 cut(s)	161, 650, 1172
GluI	GCNGC	5 cut(s)	14, 87, 567, 1140, 1373
GsaI	CCCAGC	1 cut(s)	1102
HaeIII	GGCC	1 cut(s)	677
HgaI	GACGC	1 cut(s)	1251
HincII	GTYRAC	2 cut(s)	70, 616
HindII	GTYRAC	2 cut(s)	70, 616
HinfI	GANTC	8 cut(s)	114, 243, 333, 612, 669, 809, 858, 1418
HphI	GGTGA	4 cut(s)	183, 673, 986, 1061
Hpy166II	GTNNAC	6 cut(s)	70, 263, 616, 862, 1227, 1337
Hpy188I	TCNGA	4 cut(s)	253, 328, 557, 814
Hpy188III	TCNNGA	5 cut(s)	629, 752, 824, 896, 1392
Hpy8I	GTNNAC	6 cut(s)	70, 263, 616, 862, 1227, 1337
Hpy99I	CGWCG	1 cut(s)	1267
HpyAV	CCTTC	5 cut(s)	53, 465, 688, 1302, 1433
HpyCH4III	ACNGT	2 cut(s)	1152, 1197
HpyCH4IV	ACGT	4 cut(s)	182, 386, 871, 933
HpyF10VI	GCNNNNNNNGC	5 cut(s)	356, 742, 1072, 1099, 1372
HpySE526I	ACGT	4 cut(s)	182, 386, 871, 933
Ksp22I	TGATCA	1 cut(s)	814
Kzo9I	GATC	2 cut(s)	814, 883
LguI	GCTCTTC	1 cut(s)	1083
LmnI	GCTCC	5 cut(s)	300, 370, 717, 733, 1363
Lsp1109I	GCAGC	4 cut(s)	98, 553, 1126, 1359
LweI	GCATC	2 cut(s)	1099, 1285
MaeI	CTAG	3 cut(s)	161, 650, 1172
MaeII	ACGT	4 cut(s)	182, 386, 871, 933
MaeIII	GTNAC	5 cut(s)	118, 218, 542, 872, 1162
MalI	GATC	2 cut(s)	816, 885
MboI	GATC	2 cut(s)	814, 883
MhlI	GDGCHC	1 cut(s)	381
MlyI	GAGTC	3 cut(s)	621, 803, 867
MmeI	TCCRAC	1 cut(s)	295
MroXI	GAANNNNTTC	1 cut(s)	283
MseI	TTAA	5 cut(s)	417, 516, 770, 1062, 1157
MslI	CAYNNNNRTG	1 cut(s)	932
MspA1I	CMGCKG	1 cut(s)	1102
MspR9I	CCNGG	5 cut(s)	276, 575, 674, 867, 1178
Mva1269I	GAATGC	2 cut(s)	303, 495
MvaI	CCWGG	5 cut(s)	276, 575, 674, 867, 1178
MwoI	GCNNNNNNNGC	5 cut(s)	356, 742, 1072, 1099, 1372
NcoI	CCATGG	1 cut(s)	47
NdeI	CATATG	2 cut(s)	1039, 1270
NdeII	GATC	2 cut(s)	814, 883
NlaIV	GGNNCC	2 cut(s)	372, 691
NmuCI	GTSAC	4 cut(s)	118, 218, 542, 872
NspI	RCATGY	1 cut(s)	1079
OliI	CACNNNNGTG	1 cut(s)	932
PaeI	GCATGC	1 cut(s)	1079
PaeR7I	CTCGAG	2 cut(s)	365, 740
PagI	TCATGA	1 cut(s)	895
PceI	AGGCCT	1 cut(s)	677
PciSI	GCTCTTC	1 cut(s)	1083
PctI	GAATGC	2 cut(s)	303, 495
PdmI	GAANNNNTTC	1 cut(s)	283
PfeI	GAWTC	5 cut(s)	114, 243, 333, 669, 1418
PfoI	TCCNGGA	1 cut(s)	274
PkrI	GCNGC	5 cut(s)	15, 88, 568, 1141, 1374
PleI	GAGTC	3 cut(s)	620, 803, 866
PpsI	GAGTC	3 cut(s)	620, 803, 866
Ppu21I	YACGTR	1 cut(s)	387
PshAI	GACNNNNGTC	1 cut(s)	212
PshBI	ATTAAT	1 cut(s)	516
PsiI	TTATAA	1 cut(s)	903
Psp6I	CCWGG	5 cut(s)	274, 573, 672, 865, 1176
PspEI	GGTNACC	1 cut(s)	1162
PspFI	CCCAGC	1 cut(s)	1098
PspGI	CCWGG	5 cut(s)	274, 573, 672, 865, 1176
PspN4I	GGNNCC	2 cut(s)	372, 691
PspXI	VCTCGAGB	2 cut(s)	365, 740
PstI	CTGCAG	2 cut(s)	67, 1387
PvuII	CAGCTG	1 cut(s)	1102
RseI	CAYNNNNRTG	1 cut(s)	932
SapI	GCTCTTC	1 cut(s)	1083
SaqAI	TTAA	5 cut(s)	417, 516, 770, 1062, 1157
SatI	GCNGC	5 cut(s)	14, 87, 567, 1140, 1373
Sau3AI	GATC	2 cut(s)	814, 883
SchI	GAGTC	3 cut(s)	621, 803, 867
ScrFI	CCNGG	5 cut(s)	276, 575, 674, 867, 1178
SduI	GDGCHC	1 cut(s)	381
SfaNI	GCATC	2 cut(s)	1099, 1285
SfcI	CTRYAG	2 cut(s)	63, 1383
Sfr274I	CTCGAG	2 cut(s)	365, 740
SlaI	CTCGAG	2 cut(s)	365, 740
SmiMI	CAYNNNNRTG	1 cut(s)	932
SmlI	CTYRAG	4 cut(s)	365, 629, 740, 779
SmoI	CTYRAG	4 cut(s)	365, 629, 740, 779
SpeI	ACTAGT	1 cut(s)	160
SphI	GCATGC	1 cut(s)	1079
SseBI	AGGCCT	1 cut(s)	677
SsiI	CCGC	1 cut(s)	13
SspMI	CTAG	3 cut(s)	161, 650, 1172
StuI	AGGCCT	1 cut(s)	677
StyD4I	CCNGG	5 cut(s)	274, 573, 672, 865, 1176
StyI	CCWWGG	2 cut(s)	47, 134
TaaI	ACNGT	2 cut(s)	1152, 1197
TaiI	ACGT	4 cut(s)	185, 389, 874, 936
TaqI	TCGA	4 cut(s)	366, 741, 786, 1244
TauI	GCSGC	1 cut(s)	16
TfiI	GAWTC	5 cut(s)	114, 243, 333, 669, 1418
Tru1I	TTAA	5 cut(s)	417, 516, 770, 1062, 1157
Tru9I	TTAA	5 cut(s)	417, 516, 770, 1062, 1157
TscAI	CASTG	1 cut(s)	227
TseFI	GTSAC	4 cut(s)	118, 218, 542, 872
TseI	GCWGC	4 cut(s)	86, 566, 1139, 1372
Tsp45I	GTSAC	4 cut(s)	118, 218, 542, 872
TspDTI	ATGAA	6 cut(s)	357, 596, 884, 1020, 1119, 1362
TspGWI	ACGGA	2 cut(s)	71, 206
TspRI	CASTG	1 cut(s)	227
VspI	ATTAAT	1 cut(s)	516
XapI	RAATTY	3 cut(s)	419, 1007, 1181
XceI	RCATGY	1 cut(s)	1079
XhoI	CTCGAG	2 cut(s)	365, 740
XmiI	GTMKAC	2 cut(s)	262, 1226
XmnI	GAANNNNTTC	1 cut(s)	283
XspI	CTAG	3 cut(s)	161, 650, 1172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.