Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005681

Physical Location & Seq

Genomic Coordinates Reverse (-)

12132870 .. 12136358

Gene Structure 3489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g13530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

ATGGATAAAAAGAGGCATATTGCGATTTTTACAACGGCAAGCCTTCCGTGGATGACTGGAACTGCTGTGAATCCTTTGTTCCGTGCAGCGTATCTTGCGAGAGATGGGGAGAGGATTATTAGTTTGGTTATTCCTTGGTTGTCTTTGAAGGATCAAAAATTGGTGTATCCTAACAAGATTACATTTGGCTCACCGGCAGAGCAAGAGATTTATATCCGTCACTGGCTTCATGAGAGGACTGGATTCGGATCTGAGTTCAGTTTGCTTTTTTATCCTGGAAAGTTTTCCTTAGACAAAAGGAGCATTCTTCCTGTCGGAGATATTTCTGAGGTAATTCCTGATGAAAAGGCAGATATTGCTATCCTTGAGGAGCCTGAGCACCTGACGTGGTATCATCATGGGAAGAGATGGAAAATTAAATTTGGGCTGGTTATAGGAATTATCCACACCAATTATTTGGAATATGTGAGGAGGGAGAAAAATGGAAGAATGCAGGCATTTCTTTTAAAGTATCTTAACAATTGGGTTGTCAGTATATACTGTCACAAGGTAATCAGATTATCTGCTGCCACCCAGGAGTATCCTCAGTCGATCATTTGCAATGTTCATGGTGTCAACCCCAAGTTTCTTGATATAGGCAAGAAAAAGCTAGAGCAGCAACAAAATGGAATCCAAGCCTTCAGCAAAGGTGCCTACTACATTGGGAAAATGGTGTGGAGTAAAGGCTACAAGGAGCTACTCAAGCTTCTTCAAGACCATCAAAAGAAATTAGCTGGACTTGAGGTTGATTTATATGGAACTGGGGAGGACTCTGATCAAGTTCAAAAAGCTGCAAAAAAATTGGAACTGGTTGTTAGAGTCCATCCTGGACGTGATCATGCCGATCATGAATTTCATGATTATAAAGTGTTCCTGAATCCAAGCACCACAGATGTGGTTTGTACGACCACAGCAGAAGCATTGGCAATGGGTAAAATTGTTGTATGTGCCGATCACCCCTCAAATGAGTTCTTCAAGCAGTTCCCAAATTGCCGAACATATGACAATGGTGAAGAGTTTGTCAAGCTTACACAGCAAGCACTGGCTGAACAGCCTTCCCAGCTTACGGAGGCACAAAGGCATGAGCTTTCATGGGAGGCTGCCACTGAACGGTTTTTAAGGTGTGCTGACCTAGAAAAGGCATCAACAGCTCAACTGTCAAAAGCTCCTTCAAGTAACTTTATGTCTACGTCATTGAACTTGGGGCGTAAGATGGATAGTGCGTCTGCATATGTGCATCATGTGGCATCTGGTTTTGAAGTGACACGGAGGATTTTTGGTGCAATCCCAAGGAGTTTGCAACCAGATGAAGAGCAATGCAAGGAGCTTGGGCTGGCTGTTCCTGCTGGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006643 GO:0006664 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008610 GO:0009058 GO:0009247 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0009987 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019375 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0035250 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1901137 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_trans_1_4 Glycos_transf_1

Protein Analysis

465

Amino Acids

52.71

Weight (kDa)

8.6

Isoelectric Point (pI)

36.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glycos_transf_1	PF00534	218 - 335	8.8e-12	Glycosyl transferases group 1
Glyco_trans_1_4	PF13692	232 - 337	1.2e-09	Glycosyl transferases group 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00550 AT4G00550
fragaria_vesca	FvH4_7g13530
malus_domestica	MD01G1048600.v1.1 MD07G1125900.v1.1
prunus_persica	Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1
pyrus_communis	pycom01g07380 pycom07g12000
rosa_chinensis	RchiOBHm_Chr1g0353091
rosa_laevigata	RLG00000028291
rosa_multiflora	Rmu_co8051134.1_g000001 Rmu_sc0001207.1_g000084 Rmu_sc0008840.1_g000014
rosa_roxburghii	Rroxscaffold_4G00302070
rosa_rugosa	Rorug01G0233600 Rorug01G0233600
rosa_samantha	Rh1AG247200 Rh1BG217100 Rh1CG230800 Rh1DG243200
rosa_wichuraiana	Rw0G018110 Rw1G021370 Rw1G021500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	903
AccB1I	GGYRCC	1 cut(s)	689
AccI	GTMKAC	1 cut(s)	1226
AclWI	GGATC	2 cut(s)	159, 256
AcsI	RAATTY	2 cut(s)	419, 890
AcuI	CTGAAG	1 cut(s)	664
AfaI	GTAC	1 cut(s)	943
AfiI	CCNNNNNNNGG	3 cut(s)	1105, 1149, 1177
AgsI	TTSAA	7 cut(s)	148, 752, 824, 1015, 1212, 1237, 1298
AjiI	CACGTC	2 cut(s)	387, 872
AjnI	CCWGG	3 cut(s)	274, 573, 865
AleI	CACNNNNGTG	1 cut(s)	932
Alw21I	GWGCWC	1 cut(s)	381
AlwI	GGATC	2 cut(s)	159, 256
ApeKI	GCWGC	5 cut(s)	86, 566, 655, 830, 1139
ApoI	RAATTY	2 cut(s)	419, 890
Asp700I	GAANNNNTTC	1 cut(s)	283
AsuHPI	GGTGA	3 cut(s)	183, 986, 1061
BanI	GGYRCC	1 cut(s)	689
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	5 cut(s)	98, 553, 667, 817, 1126
BccI	CCATC	5 cut(s)	98, 402, 765, 870, 1246
BceAI	ACGGC	1 cut(s)	51
BciT130I	CCWGG	3 cut(s)	276, 575, 867
BciVI	GTATCC	2 cut(s)	177, 591
BclI	TGATCA	2 cut(s)	814, 874
BfaI	CTAG	2 cut(s)	650, 1172
BfuI	GTATCC	2 cut(s)	177, 591
BisI	GCNGC	5 cut(s)	87, 567, 656, 831, 1140
BlsI	GCNGC	5 cut(s)	88, 568, 657, 832, 1141
Bme1390I	CCNGG	3 cut(s)	276, 575, 867
BmgBI	CACGTC	2 cut(s)	387, 872
BmiI	GGNNCC	2 cut(s)	372, 691
BmrFI	CCNGG	3 cut(s)	276, 575, 867
BmrI	ACTGGG	1 cut(s)	810
BmsI	GCATC	3 cut(s)	1190, 1285, 1295
BmuI	ACTGGG	1 cut(s)	810
Bpu10I	CCTNAGC	1 cut(s)	375
BpuEI	CTTGAG	3 cut(s)	386, 725, 800
BsaBI	GATNNNNATC	2 cut(s)	212, 247
BsaJI	CCNNGG	4 cut(s)	47, 134, 573, 1328
Bsc4I	CCNNNNNNNGG	3 cut(s)	1105, 1149, 1177
Bse118I	RCCGGY	1 cut(s)	193
Bse1I	ACTGG	6 cut(s)	61, 227, 244, 805, 852, 1086
Bse3DI	GCAATG	3 cut(s)	607, 972, 1361
Bse8I	GATNNNNATC	2 cut(s)	212, 247
BseBI	CCWGG	3 cut(s)	276, 575, 867
BseDI	CCNNGG	4 cut(s)	47, 134, 573, 1328
BseGI	GGATG	2 cut(s)	57, 862
BseJI	GATNNNNATC	2 cut(s)	212, 247
BseLI	CCNNNNNNNGG	3 cut(s)	1105, 1149, 1177
BseMI	GCAATG	3 cut(s)	607, 972, 1361
BseMII	CTCAG	4 cut(s)	243, 318, 366, 599
BseNI	ACTGG	6 cut(s)	61, 227, 244, 805, 852, 1086
BseRI	GAGGAG	2 cut(s)	383, 484
BseXI	GCAGC	5 cut(s)	98, 553, 667, 817, 1126
BseYI	CCCAGC	1 cut(s)	1098
BsgI	GTGCAG	1 cut(s)	105
BshNI	GGYRCC	1 cut(s)	689
BsiHKAI	GWGCWC	1 cut(s)	381
BsiSI	CCGG	1 cut(s)	194
BslI	CCNNNNNNNGG	3 cut(s)	1105, 1149, 1177
BsmI	GAATGC	2 cut(s)	303, 495
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp143I	GATC	7 cut(s)	151, 248, 591, 814, 874, 883, 991
BspCNI	CTCAG	4 cut(s)	244, 319, 367, 598
BspHI	TCATGA	3 cut(s)	229, 886, 895
BspLI	GGNNCC	2 cut(s)	372, 691
BspPI	GGATC	2 cut(s)	159, 256
BspQI	GCTCTTC	1 cut(s)	1344
BspT107I	GGYRCC	1 cut(s)	689
BsrDI	GCAATG	3 cut(s)	607, 972, 1361
BsrFI	RCCGGY	1 cut(s)	193
BsrI	ACTGG	6 cut(s)	61, 227, 244, 805, 852, 1086
BssAI	RCCGGY	1 cut(s)	193
BssECI	CCNNGG	4 cut(s)	47, 134, 573, 1328
BssMI	GATC	7 cut(s)	151, 248, 591, 814, 874, 883, 991
BssT1I	CCWWGG	2 cut(s)	134, 1328
Bst2UI	CCWGG	3 cut(s)	276, 575, 867
Bst4CI	ACNGT	3 cut(s)	542, 1152, 1197
Bst6I	CTCTTC	3 cut(s)	398, 1047, 1344
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstC8I	GCNNGC	5 cut(s)	40, 495, 1077, 1374, 1387
BstDEI	CTNAG	5 cut(s)	252, 289, 327, 375, 585
BstDSI	CCRYGG	1 cut(s)	47
BstENI	CCTNNNNNAGG	1 cut(s)	1175
BstF5I	GGATG	2 cut(s)	57, 862
BstKTI	GATC	7 cut(s)	154, 251, 594, 817, 877, 886, 994
BstMBI	GATC	7 cut(s)	151, 248, 591, 814, 874, 883, 991
BstMWI	GCNNNNNNNGC	8 cut(s)	95, 356, 655, 742, 1072, 1099, 1187, 1382
BstNI	CCWGG	3 cut(s)	276, 575, 867
BstSCI	CCNGG	3 cut(s)	274, 573, 865
BstV1I	GCAGC	5 cut(s)	98, 553, 667, 817, 1126
BstX2I	RGATCY	1 cut(s)	248
BstXI	CCANNNNNNTGG	2 cut(s)	457, 934
BstYI	RGATCY	1 cut(s)	248
BsuI	GTATCC	2 cut(s)	177, 591
BtgI	CCRYGG	1 cut(s)	47
BtrI	CACGTC	2 cut(s)	387, 872
BtsCI	GGATG	2 cut(s)	57, 862
BtsIMutI	CAGTG	3 cut(s)	220, 1079, 1143
Cac8I	GCNNGC	5 cut(s)	40, 495, 1077, 1374, 1387
CciI	TCATGA	3 cut(s)	229, 886, 895
Cfr10I	RCCGGY	1 cut(s)	193
CseI	GACGC	1 cut(s)	1251
Csp6I	GTAC	1 cut(s)	942
CviAII	CATG	9 cut(s)	230, 398, 608, 878, 887, 896, 1121, 1131, 1280
CviQI	GTAC	1 cut(s)	942
DdeI	CTNAG	5 cut(s)	252, 289, 327, 375, 585
DpnI	GATC	7 cut(s)	153, 250, 593, 816, 876, 885, 993
DpnII	GATC	7 cut(s)	151, 248, 591, 814, 874, 883, 991
DraI	TTTAAA	1 cut(s)	507
Eam1104I	CTCTTC	3 cut(s)	398, 1047, 1344
EarI	CTCTTC	3 cut(s)	398, 1047, 1344
Eco130I	CCWWGG	2 cut(s)	134, 1328
Eco57I	CTGAAG	1 cut(s)	664
EcoNI	CCTNNNNNAGG	1 cut(s)	1175
EcoRII	CCWGG	3 cut(s)	274, 573, 865
EcoT14I	CCWWGG	2 cut(s)	134, 1328
ErhI	CCWWGG	2 cut(s)	134, 1328
FaeI	CATG	9 cut(s)	233, 401, 611, 881, 890, 899, 1124, 1134, 1283
FalI	AAGNNNNNCTT	2 cut(s)	272, 304
FatI	CATG	9 cut(s)	229, 397, 607, 877, 886, 895, 1120, 1130, 1279
FauNDI	CATATG	2 cut(s)	1039, 1270
FbaI	TGATCA	2 cut(s)	814, 874
FblI	GTMKAC	1 cut(s)	1226
Fnu4HI	GCNGC	5 cut(s)	87, 567, 656, 831, 1140
FokI	GGATG	2 cut(s)	64, 849
Fsp4HI	GCNGC	5 cut(s)	87, 567, 656, 831, 1140
FspBI	CTAG	2 cut(s)	650, 1172
GluI	GCNGC	5 cut(s)	87, 567, 656, 831, 1140
GsaI	CCCAGC	1 cut(s)	1102
HapII	CCGG	1 cut(s)	194
HgaI	GACGC	1 cut(s)	1251
Hin1II	CATG	9 cut(s)	233, 401, 611, 881, 890, 899, 1124, 1134, 1283
HincII	GTYRAC	1 cut(s)	616
HindII	GTYRAC	1 cut(s)	616
HindIII	AAGCTT	2 cut(s)	743, 1064
HinfI	GANTC	6 cut(s)	70, 243, 669, 809, 858, 916
HpaII	CCGG	1 cut(s)	194
HphI	GGTGA	3 cut(s)	183, 986, 1061
Hpy166II	GTNNAC	2 cut(s)	616, 1227
Hpy188I	TCNGA	6 cut(s)	248, 253, 317, 328, 557, 814
Hpy188III	TCNNGA	7 cut(s)	230, 338, 629, 752, 887, 896, 913
Hpy8I	GTNNAC	2 cut(s)	616, 1227
HpyAV	CCTTC	5 cut(s)	53, 142, 688, 1104, 1218
HpyCH4III	ACNGT	3 cut(s)	542, 1152, 1197
HpyCH4IV	ACGT	3 cut(s)	386, 871, 1229
HpyCH4V	TGCA	9 cut(s)	86, 493, 600, 833, 1268, 1276, 1322, 1339, 1359
HpyF10VI	GCNNNNNNNGC	8 cut(s)	95, 356, 655, 742, 1072, 1099, 1187, 1382
HpyF3I	CTNAG	5 cut(s)	252, 289, 327, 375, 585
HpySE526I	ACGT	3 cut(s)	386, 871, 1229
Hsp92II	CATG	9 cut(s)	233, 401, 611, 881, 890, 899, 1124, 1134, 1283
Ksp22I	TGATCA	2 cut(s)	814, 874
Kzo9I	GATC	7 cut(s)	151, 248, 591, 814, 874, 883, 991
LguI	GCTCTTC	1 cut(s)	1344
LmnI	GCTCC	5 cut(s)	300, 370, 733, 1210, 1363
Lsp1109I	GCAGC	5 cut(s)	98, 553, 667, 817, 1126
LweI	GCATC	3 cut(s)	1190, 1285, 1295
MaeI	CTAG	2 cut(s)	650, 1172
MaeII	ACGT	3 cut(s)	386, 871, 1229
MaeIII	GTNAC	4 cut(s)	218, 542, 1214, 1300
MalI	GATC	7 cut(s)	153, 250, 593, 816, 876, 885, 993
MboI	GATC	7 cut(s)	151, 248, 591, 814, 874, 883, 991
MboII	GAAGA	7 cut(s)	299, 415, 498, 740, 1003, 1064, 1361
MfeI	CAATTG	1 cut(s)	520
MflI	RGATCY	1 cut(s)	248
MhlI	GDGCHC	1 cut(s)	381
MlyI	GAGTC	2 cut(s)	803, 867
MmeI	TCCRAC	1 cut(s)	295
MroXI	GAANNNNTTC	1 cut(s)	283
MseI	TTAA	4 cut(s)	417, 506, 516, 1157
MslI	CAYNNNNRTG	1 cut(s)	932
MspI	CCGG	1 cut(s)	194
MspR9I	CCNGG	3 cut(s)	276, 575, 867
MunI	CAATTG	1 cut(s)	520
Mva1269I	GAATGC	2 cut(s)	303, 495
MvaI	CCWGG	3 cut(s)	276, 575, 867
MwoI	GCNNNNNNNGC	8 cut(s)	95, 356, 655, 742, 1072, 1099, 1187, 1382
NdeI	CATATG	2 cut(s)	1039, 1270
NdeII	GATC	7 cut(s)	151, 248, 591, 814, 874, 883, 991
NlaIII	CATG	9 cut(s)	233, 401, 611, 881, 890, 899, 1124, 1134, 1283
NlaIV	GGNNCC	2 cut(s)	372, 691
NmuCI	GTSAC	3 cut(s)	218, 542, 1300
OliI	CACNNNNGTG	1 cut(s)	932
PagI	TCATGA	3 cut(s)	229, 886, 895
PciSI	GCTCTTC	1 cut(s)	1344
PctI	GAATGC	2 cut(s)	303, 495
PdmI	GAANNNNTTC	1 cut(s)	283
PfeI	GAWTC	4 cut(s)	70, 243, 669, 916
PfoI	TCCNGGA	2 cut(s)	274, 865
PkrI	GCNGC	5 cut(s)	88, 568, 657, 832, 1141
PleI	GAGTC	2 cut(s)	803, 866
PpsI	GAGTC	2 cut(s)	803, 866
PsiI	TTATAA	1 cut(s)	903
Psp6I	CCWGG	3 cut(s)	274, 573, 865
PspFI	CCCAGC	1 cut(s)	1098
PspGI	CCWGG	3 cut(s)	274, 573, 865
PspN4I	GGNNCC	2 cut(s)	372, 691
PsuI	RGATCY	1 cut(s)	248
RsaI	GTAC	1 cut(s)	943
RsaNI	GTAC	1 cut(s)	942
RseI	CAYNNNNRTG	1 cut(s)	932
SapI	GCTCTTC	1 cut(s)	1344
SaqAI	TTAA	4 cut(s)	417, 506, 516, 1157
SatI	GCNGC	5 cut(s)	87, 567, 656, 831, 1140
Sau3AI	GATC	7 cut(s)	151, 248, 591, 814, 874, 883, 991
SchI	GAGTC	2 cut(s)	803, 867
ScrFI	CCNGG	3 cut(s)	276, 575, 867
SduI	GDGCHC	1 cut(s)	381
SfaNI	GCATC	3 cut(s)	1190, 1285, 1295
SmiMI	CAYNNNNRTG	1 cut(s)	932
SmlI	CTYRAG	3 cut(s)	365, 740, 779
SmoI	CTYRAG	3 cut(s)	365, 740, 779
SspMI	CTAG	2 cut(s)	650, 1172
StyD4I	CCNGG	3 cut(s)	274, 573, 865
StyI	CCWWGG	2 cut(s)	134, 1328
TaaI	ACNGT	3 cut(s)	542, 1152, 1197
TaiI	ACGT	3 cut(s)	389, 874, 1232
TaqI	TCGA	1 cut(s)	590
TfiI	GAWTC	4 cut(s)	70, 243, 669, 916
Tru1I	TTAA	4 cut(s)	417, 506, 516, 1157
Tru9I	TTAA	4 cut(s)	417, 506, 516, 1157
TscAI	CASTG	3 cut(s)	227, 1086, 1150
TseFI	GTSAC	3 cut(s)	218, 542, 1300
TseI	GCWGC	5 cut(s)	86, 566, 655, 830, 1139
Tsp45I	GTSAC	3 cut(s)	218, 542, 1300
TspDTI	ATGAA	7 cut(s)	218, 357, 596, 884, 903, 1119, 1362
TspGWI	ACGGA	5 cut(s)	36, 71, 206, 1121, 1321
TspRI	CASTG	3 cut(s)	227, 1086, 1150
XagI	CCTNNNNNAGG	1 cut(s)	1175
XapI	RAATTY	2 cut(s)	419, 890
XmiI	GTMKAC	1 cut(s)	1226
XmnI	GAANNNNTTC	1 cut(s)	283
XspI	CTAG	2 cut(s)	650, 1172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.