Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005681

Physical Location & Seq

Genomic Coordinates Reverse (-)

45885914 .. 45889593

Gene Structure 3680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG243200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGCTTCTGTTTTCCTCACATTCCTTTTATATGCAGTAGGACTAACTTTGACATCACTTCTGTTGCAGTTTTCCTTGGACAAAAGGAGCATTCTTGCTGTCGGAGATATTTCTGAGATAATTCCTGACGAAAAGGCAGATATTGCTATCCTTGAGGAGCCTGAGCACCTCACGTGGTATCATTATGGGAAGAGATGGAAAATTAAATTCCGGCTGGTTATAGGAATTATCCACACCAATTATTTGGAATATGTGAGGAGGGAGAAGAATGGAAGAATGCAAGCATTTCTTCTAAAACATGTTAATAATTGGGTTGTCAGTATATACTGTCACAAGGTAATCAGATTATCTGCTGCCACCCAGGAGTATCCTCAATCGATCATTTGCAATGTTCATGGTGTCAACCCCAAGTTTCTGGAAATAGGCAAGAAAAAGCTAGAGCAGCAACAAAATGGAAGCCAAGCCTTCAGCAAAGGTGCCTACTACATTGGGAAAATGGTGTGGAGTAAAGGCTACAAGGAGCTGCTCAAACTTCTTCAAGACCATCGAAAGGAATTAGCTGGACTTGAGGTTGATTTATATGGAACTGGGGAAGACTCTGATCAAGTTCGGGAAGCTGCTGAAAAATTGGAACTGGCTGTTAGAGTCCATCCTGGGCGTGATCATGCTGATCTTGAATTTCATGATTATAAAGTGTTCCTGAATCCAAGCACCACAGATGTGGTTTGCACGACCACAGCAGAAGCATTGGCAATGGGTAAAATTGTTGTGTGCGCCAATCACCCCTCGAATGACTTCTTCAAGCAGTTCCCAAATTGCCGAACATATGACAATGGTGATGGGTTTGTCAAGCTCACACAGCAAGCACTGGCTGAACAGCCTGCTCAGCTTACTGAGGCACAAAGGTATGAGCTTTCATGGGCGGCTGCCACCGAACGGTTTTTAAGGTGTGCTGAGCTAGAAAAGGCATCGACAGCGAAACTGTCAGAATCTCCCTCAAAGAACTTTATGTCTACGTCATTGAACTTGGGGGGTAAGATGGAAACTGCATCTGCATATGTGCATCATGTGGCATCTGGTTTTGAAGTAACGCGGAGGATTTTTGGTGCGATTCCAAGGAGTTTGCAACCAGATGAAGAGCAATGCAAGGAGCTTGGGCTGGCTGTTCCTGCTGGCAAGCAAGGCTCCGGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006643 GO:0006664 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008610 GO:0009058 GO:0009247 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0009987 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019375 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0035250 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1901137 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_trans_1_4 Glycos_transf_1

Protein Analysis

398

Amino Acids

44.75

Weight (kDa)

7.64

Isoelectric Point (pI)

35.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glycos_transf_1	PF00534	148 - 263	4.4e-11	Glycosyl transferases group 1
Glyco_trans_1_4	PF13692	161 - 263	1.9e-09	Glycosyl transferases group 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00550 AT4G00550
fragaria_vesca	FvH4_7g13530
malus_domestica	MD01G1048600.v1.1 MD07G1125900.v1.1
prunus_persica	Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1
pyrus_communis	pycom01g07380 pycom07g12000
rosa_chinensis	RchiOBHm_Chr1g0353091
rosa_laevigata	RLG00000028291
rosa_multiflora	Rmu_co8051134.1_g000001 Rmu_sc0001207.1_g000084 Rmu_sc0008840.1_g000014
rosa_roxburghii	Rroxscaffold_4G00302070
rosa_rugosa	Rorug01G0233600 Rorug01G0233600
rosa_samantha	Rh1AG247200 Rh1BG217100 Rh1CG230800 Rh1DG243200
rosa_wichuraiana	Rw0G018110 Rw1G021370 Rw1G021500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	690
AccB1I	GGYRCC	1 cut(s)	476
AccI	GTMKAC	1 cut(s)	1013
AccII	CGCG	1 cut(s)	1093
AccIII	TCCGGA	1 cut(s)	1187
AciI	CCGC	2 cut(s)	923, 1093
AcsI	RAATTY	2 cut(s)	206, 677
AcuI	CTGAAG	1 cut(s)	451
AcvI	CACGTG	1 cut(s)	174
AfiI	CCNNNNNNNGG	2 cut(s)	550, 936
AflIII	ACRYGT	1 cut(s)	298
AgsI	TTSAA	5 cut(s)	539, 677, 802, 1024, 1085
AjnI	CCWGG	2 cut(s)	360, 652
AleI	CACNNNNGTG	1 cut(s)	719
AluBI	AGCT	9 cut(s)	436, 523, 560, 617, 853, 889, 913, 958, 1153
AluI	AGCT	9 cut(s)	436, 523, 560, 617, 853, 889, 913, 958, 1153
Alw21I	GWGCWC	1 cut(s)	168
Aor13HI	TCCGGA	1 cut(s)	1187
ApeKI	GCWGC	5 cut(s)	353, 442, 523, 617, 926
ApoI	RAATTY	2 cut(s)	206, 677
Asp700I	GAANNNNTTC	1 cut(s)	794
AspLEI	GCGC	1 cut(s)	776
AsuHPI	GGTGA	2 cut(s)	773, 848
BanI	GGYRCC	1 cut(s)	476
BbrPI	CACGTG	1 cut(s)	174
BbsI	GAAGAC	1 cut(s)	600
Bbv12I	GWGCWC	1 cut(s)	168
BbvI	GCAGC	5 cut(s)	340, 454, 510, 604, 913
BccI	CCATC	5 cut(s)	189, 552, 657, 833, 1033
BciT130I	CCWGG	2 cut(s)	362, 654
BciVI	GTATCC	1 cut(s)	378
BclI	TGATCA	2 cut(s)	601, 661
BfaI	CTAG	2 cut(s)	437, 959
BfuI	GTATCC	1 cut(s)	378
BisI	GCNGC	6 cut(s)	354, 443, 524, 618, 924, 927
BlpI	GCTNAGC	2 cut(s)	885, 954
BlsI	GCNGC	6 cut(s)	355, 444, 525, 619, 925, 928
Bme1390I	CCNGG	2 cut(s)	362, 654
BmiI	GGNNCC	3 cut(s)	159, 478, 1186
BmrFI	CCNGG	2 cut(s)	362, 654
BmrI	ACTGGG	1 cut(s)	597
BmsI	GCATC	4 cut(s)	977, 1058, 1072, 1082
BmuI	ACTGGG	1 cut(s)	597
BpiI	GAAGAC	1 cut(s)	600
Bpu10I	CCTNAGC	1 cut(s)	162
Bpu1102I	GCTNAGC	2 cut(s)	885, 954
BpuEI	CTTGAG	2 cut(s)	173, 587
Bsa29I	ATCGAT	1 cut(s)	377
BsaAI	YACGTR	1 cut(s)	174
BsaJI	CCNNGG	4 cut(s)	75, 360, 653, 1115
BsaWI	WCCGGW	1 cut(s)	1187
Bsc4I	CCNNNNNNNGG	2 cut(s)	550, 936
Bse1I	ACTGG	3 cut(s)	592, 639, 873
Bse3DI	GCAATG	3 cut(s)	394, 759, 1148
BseAI	TCCGGA	1 cut(s)	1187
BseBI	CCWGG	2 cut(s)	362, 654
BseCI	ATCGAT	1 cut(s)	377
BseDI	CCNNGG	4 cut(s)	75, 360, 653, 1115
BseGI	GGATG	1 cut(s)	649
BseLI	CCNNNNNNNGG	2 cut(s)	550, 936
BseMI	GCAATG	3 cut(s)	394, 759, 1148
BseMII	CTCAG	5 cut(s)	105, 153, 885, 899, 945
BseNI	ACTGG	3 cut(s)	592, 639, 873
BseRI	GAGGAG	2 cut(s)	170, 271
BseXI	GCAGC	5 cut(s)	340, 454, 510, 604, 913
Bsh1236I	CGCG	1 cut(s)	1093
BshNI	GGYRCC	1 cut(s)	476
BshVI	ATCGAT	1 cut(s)	377
BsiHKAI	GWGCWC	1 cut(s)	168
BsiSI	CCGG	2 cut(s)	211, 1188
BslI	CCNNNNNNNGG	2 cut(s)	550, 936
BsmI	GAATGC	2 cut(s)	90, 282
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp13I	TCCGGA	1 cut(s)	1187
Bsp143I	GATC	4 cut(s)	378, 601, 661, 670
Bsp1720I	GCTNAGC	2 cut(s)	885, 954
BspACI	CCGC	2 cut(s)	923, 1093
BspCNI	CTCAG	5 cut(s)	106, 154, 886, 898, 946
BspDI	ATCGAT	1 cut(s)	377
BspEI	TCCGGA	1 cut(s)	1187
BspFNI	CGCG	1 cut(s)	1093
BspHI	TCATGA	1 cut(s)	682
BspLI	GGNNCC	3 cut(s)	159, 478, 1186
BspQI	GCTCTTC	1 cut(s)	1131
BspT107I	GGYRCC	1 cut(s)	476
BsrDI	GCAATG	3 cut(s)	394, 759, 1148
BsrI	ACTGG	3 cut(s)	592, 639, 873
BssECI	CCNNGG	4 cut(s)	75, 360, 653, 1115
BssMI	GATC	4 cut(s)	378, 601, 661, 670
BssT1I	CCWWGG	2 cut(s)	75, 1115
Bst2UI	CCWGG	2 cut(s)	362, 654
Bst4CI	ACNGT	3 cut(s)	329, 939, 984
Bst6I	CTCTTC	2 cut(s)	185, 1131
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstBAI	YACGTR	1 cut(s)	174
BstC8I	GCNNGC	6 cut(s)	282, 864, 882, 1161, 1174, 1178
BstDEI	CTNAG	5 cut(s)	114, 162, 885, 894, 954
BstF5I	GGATG	1 cut(s)	649
BstFNI	CGCG	1 cut(s)	1093
BstHHI	GCGC	1 cut(s)	776
BstKTI	GATC	4 cut(s)	381, 604, 664, 673
BstMBI	GATC	4 cut(s)	378, 601, 661, 670
BstMWI	GCNNNNNNNGC	7 cut(s)	143, 442, 859, 886, 974, 1169, 1182
BstNI	CCWGG	2 cut(s)	362, 654
BstNSI	RCATGY	1 cut(s)	302
BstSCI	CCNGG	2 cut(s)	360, 652
BstUI	CGCG	1 cut(s)	1093
BstV1I	GCAGC	5 cut(s)	340, 454, 510, 604, 913
BstV2I	GAAGAC	1 cut(s)	600
BstXI	CCANNNNNNTGG	3 cut(s)	244, 415, 721
Bsu15I	ATCGAT	1 cut(s)	377
BsuI	GTATCC	1 cut(s)	378
BsuTUI	ATCGAT	1 cut(s)	377
BtsCI	GGATG	1 cut(s)	649
BtsIMutI	CAGTG	1 cut(s)	866
Cac8I	GCNNGC	6 cut(s)	282, 864, 882, 1161, 1174, 1178
CciI	TCATGA	1 cut(s)	682
CfoI	GCGC	1 cut(s)	776
ClaI	ATCGAT	1 cut(s)	377
CviAII	CATG	6 cut(s)	299, 395, 665, 683, 918, 1067
DdeI	CTNAG	5 cut(s)	114, 162, 885, 894, 954
DpnI	GATC	4 cut(s)	380, 603, 663, 672
DpnII	GATC	4 cut(s)	378, 601, 661, 670
Eam1104I	CTCTTC	2 cut(s)	185, 1131
EarI	CTCTTC	2 cut(s)	185, 1131
Eco130I	CCWWGG	2 cut(s)	75, 1115
Eco57I	CTGAAG	1 cut(s)	451
Eco72I	CACGTG	1 cut(s)	174
EcoRII	CCWGG	2 cut(s)	360, 652
EcoT14I	CCWWGG	2 cut(s)	75, 1115
ErhI	CCWWGG	2 cut(s)	75, 1115
FaeI	CATG	6 cut(s)	302, 398, 668, 686, 921, 1070
FalI	AAGNNNNNCTT	2 cut(s)	273, 305
FatI	CATG	6 cut(s)	298, 394, 664, 682, 917, 1066
FauNDI	CATATG	2 cut(s)	826, 1057
FbaI	TGATCA	2 cut(s)	601, 661
FblI	GTMKAC	1 cut(s)	1013
Fnu4HI	GCNGC	6 cut(s)	354, 443, 524, 618, 924, 927
FokI	GGATG	1 cut(s)	636
Fsp4HI	GCNGC	6 cut(s)	354, 443, 524, 618, 924, 927
FspBI	CTAG	2 cut(s)	437, 959
GlaI	GCGC	1 cut(s)	775
GluI	GCNGC	6 cut(s)	354, 443, 524, 618, 924, 927
HapII	CCGG	2 cut(s)	211, 1188
HhaI	GCGC	1 cut(s)	776
Hin1II	CATG	6 cut(s)	302, 398, 668, 686, 921, 1070
Hin6I	GCGC	1 cut(s)	774
HinP1I	GCGC	1 cut(s)	774
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HinfI	GANTC	5 cut(s)	596, 645, 703, 989, 1111
HpaII	CCGG	2 cut(s)	211, 1188
HphI	GGTGA	2 cut(s)	773, 848
Hpy166II	GTNNAC	2 cut(s)	403, 1014
Hpy188I	TCNGA	5 cut(s)	104, 115, 344, 601, 988
Hpy188III	TCNNGA	8 cut(s)	125, 416, 539, 611, 674, 683, 700, 1188
Hpy8I	GTNNAC	2 cut(s)	403, 1014
HpyAV	CCTTC	1 cut(s)	475
HpyCH4III	ACNGT	3 cut(s)	329, 939, 984
HpyCH4IV	ACGT	2 cut(s)	173, 1016
HpyF10VI	GCNNNNNNNGC	7 cut(s)	143, 442, 859, 886, 974, 1169, 1182
HpyF3I	CTNAG	5 cut(s)	114, 162, 885, 894, 954
HpySE526I	ACGT	2 cut(s)	173, 1016
Hsp92II	CATG	6 cut(s)	302, 398, 668, 686, 921, 1070
HspAI	GCGC	1 cut(s)	774
Kpn2I	TCCGGA	1 cut(s)	1187
Ksp22I	TGATCA	2 cut(s)	601, 661
Kzo9I	GATC	4 cut(s)	378, 601, 661, 670
LguI	GCTCTTC	1 cut(s)	1131
LmnI	GCTCC	5 cut(s)	87, 157, 520, 1150, 1190
Lsp1109I	GCAGC	5 cut(s)	340, 454, 510, 604, 913
LweI	GCATC	4 cut(s)	977, 1058, 1072, 1082
MaeI	CTAG	2 cut(s)	437, 959
MaeII	ACGT	2 cut(s)	173, 1016
MaeIII	GTNAC	2 cut(s)	329, 1087
MalI	GATC	4 cut(s)	380, 603, 663, 672
MboI	GATC	4 cut(s)	378, 601, 661, 670
MboII	GAAGA	8 cut(s)	202, 277, 281, 285, 527, 605, 790, 1148
MhlI	GDGCHC	1 cut(s)	168
MlyI	GAGTC	2 cut(s)	590, 654
MmeI	TCCRAC	1 cut(s)	82
MroI	TCCGGA	1 cut(s)	1187
MroXI	GAANNNNTTC	1 cut(s)	794
MseI	TTAA	3 cut(s)	204, 303, 944
MslI	CAYNNNNRTG	1 cut(s)	719
MspI	CCGG	2 cut(s)	211, 1188
MspR9I	CCNGG	2 cut(s)	362, 654
Mva1269I	GAATGC	2 cut(s)	90, 282
MvaI	CCWGG	2 cut(s)	362, 654
MvnI	CGCG	1 cut(s)	1093
MwoI	GCNNNNNNNGC	7 cut(s)	143, 442, 859, 886, 974, 1169, 1182
NdeI	CATATG	2 cut(s)	826, 1057
NdeII	GATC	4 cut(s)	378, 601, 661, 670
NlaIII	CATG	6 cut(s)	302, 398, 668, 686, 921, 1070
NlaIV	GGNNCC	3 cut(s)	159, 478, 1186
NmuCI	GTSAC	1 cut(s)	329
NspI	RCATGY	1 cut(s)	302
OliI	CACNNNNGTG	1 cut(s)	719
PagI	TCATGA	1 cut(s)	682
PciI	ACATGT	1 cut(s)	298
PciSI	GCTCTTC	1 cut(s)	1131
PctI	GAATGC	2 cut(s)	90, 282
PdmI	GAANNNNTTC	1 cut(s)	794
PfeI	GAWTC	3 cut(s)	703, 989, 1111
PkrI	GCNGC	6 cut(s)	355, 444, 525, 619, 925, 928
PleI	GAGTC	2 cut(s)	590, 653
PmaCI	CACGTG	1 cut(s)	174
PmlI	CACGTG	1 cut(s)	174
PpsI	GAGTC	2 cut(s)	590, 653
Ppu21I	YACGTR	1 cut(s)	174
PscI	ACATGT	1 cut(s)	298
PsiI	TTATAA	1 cut(s)	690
Psp6I	CCWGG	2 cut(s)	360, 652
PspCI	CACGTG	1 cut(s)	174
PspGI	CCWGG	2 cut(s)	360, 652
PspN4I	GGNNCC	3 cut(s)	159, 478, 1186
RseI	CAYNNNNRTG	1 cut(s)	719
SapI	GCTCTTC	1 cut(s)	1131
SaqAI	TTAA	3 cut(s)	204, 303, 944
SatI	GCNGC	6 cut(s)	354, 443, 524, 618, 924, 927
Sau3AI	GATC	4 cut(s)	378, 601, 661, 670
SchI	GAGTC	2 cut(s)	590, 654
ScrFI	CCNGG	2 cut(s)	362, 654
SduI	GDGCHC	1 cut(s)	168
SfaNI	GCATC	4 cut(s)	977, 1058, 1072, 1082
SmiMI	CAYNNNNRTG	1 cut(s)	719
SmlI	CTYRAG	2 cut(s)	152, 566
SmoI	CTYRAG	2 cut(s)	152, 566
SsiI	CCGC	2 cut(s)	923, 1093
SspMI	CTAG	2 cut(s)	437, 959
StyD4I	CCNGG	2 cut(s)	360, 652
StyI	CCWWGG	2 cut(s)	75, 1115
TaaI	ACNGT	3 cut(s)	329, 939, 984
TaiI	ACGT	2 cut(s)	176, 1019
TaqI	TCGA	4 cut(s)	377, 547, 788, 971
TauI	GCSGC	1 cut(s)	926
TfiI	GAWTC	3 cut(s)	703, 989, 1111
Tru1I	TTAA	3 cut(s)	204, 303, 944
Tru9I	TTAA	3 cut(s)	204, 303, 944
TscAI	CASTG	1 cut(s)	873
TseFI	GTSAC	1 cut(s)	329
TseI	GCWGC	5 cut(s)	353, 442, 523, 617, 926
Tsp45I	GTSAC	1 cut(s)	329
TspDTI	ATGAA	4 cut(s)	383, 671, 906, 1149
TspRI	CASTG	1 cut(s)	873
XapI	RAATTY	2 cut(s)	206, 677
XceI	RCATGY	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	1013
XmnI	GAANNNNTTC	1 cut(s)	794
XspI	CTAG	2 cut(s)	437, 959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.