Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0005681

Physical Location & Seq

Genomic Coordinates Forward (+)

15165283 .. 15168759

Gene Structure 3477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1048600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGGATCAAAAGCGACATATTGCGATATTTACTACTGCAAGCCTTCCATGGATGACTGGAACTGCCGTCAACCCTCTATTCCGTGCAGCCTATCTTGCAAAAGATGGGGAGAGACTTGTCTCTTTGGTTATCCCTTGGTTATCGTTGAAAGATCAAAAACTAGTATATCCTAACAATATCACATTCAGCAGACCTACGGAGCAGGAGGCTTATGTCCGTCACTGGCTTGACGAGAGGATTGGGTTCAAATCTGATTTCAGTATACTTTTTTATCCTGGAAAGTTTTCCTTAGATAAAAGGAGCATCCTCGCTGCTGGAGATATTTCAGAAGTAATCCCTGATGAAAATGCAGATGTTGCCATCCTTGAGGAGCCTGAGCACCTTACATGGTTTCATCACGGGAAGAGATGGAAGATTAAGTTCCGGCTGGTTGTAGGAATCATCCACACCAATTATTTGGAATATGTGAGAAGGGAGAGGAATGGAAGAATGCAAGCATTTCTTCTTAAATATATAAATAATTGGGTTGTCGGAATATATTGTCATAAGGTAATCCGGTTATCTGCCGCCACCCAGGATTATCCTAAATCCATTGTTTGCAATGTTCATGGAGTCAACCCAAAATTTCTGGAGATAGGCAAGAAAAAGCTAGAGCAACAACAAAATGGAGTACAGGCCTTCACCAAAGGTGCCTATTACATTGGGAAGATGGTATGGAGCAAAGGCTACAAGGAGCTACTCAAGCTTCTGCAGGATCATCAAAAGGAATTAAATGGACTTGAAGTGGATTTATATGGAAGCGGGGAGGACTCTGATCAAGTTCAGGAAGCTGCCAAAAGATTGGAACTGGCCGTTAGAGTCCACCCTGGTCGTGACCATGCTGATCTTGAATTTCACGATTATAAGGTATTCCTCAATCCAAGCACCACGGATGTGGTTTGCACAACCACAGCAGAAGCATTGGCAATGGGTAAAATCGTTGTATGTGCCAATCACCCCTCAAATGAATTCTTCAAGCAATTCCCAAATTGTCGAACATATGACAATGCTGATGAGTTTGTTAAGCTCACACAGCAGGCGCTTGCTGAAGAGCCTGCCCAGCTGACTGATGCACAGAGGCATGAGCTTTCATGGGAAACTGCCACGGAACGATTTCTAAGGGTTGCTGAGCTAGACCAGGCTTTTACCAGGAAGCTATCAAAAAATCCTTCAAAAAGCTTTATGTCTACCTCATTAGGTGCTTGGAGTACAATGGAGGATGCATCAGCATATGTGCATCATGTGGCTTCTGGTTTTGAAACAACACGGAAGATATTCGGTGCAATCCCGAAGAGTTTGCAACCAGATGAGGAACAATGTAAAGAGCTTGGGTTTGCCATGCCTGCAGGTAAACGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006643 GO:0006664 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008610 GO:0009058 GO:0009247 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0009987 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019375 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0035250 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1901137 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_trans_1_4 Glycos_transf_1

Protein Analysis

467

Amino Acids

53.21

Weight (kDa)

7.68

Isoelectric Point (pI)

33.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glycos_transf_1	PF00534	226 - 342	3.6e-11	Glycosyl transferases group 1
Glyco_trans_1_4	PF13692	232 - 340	1.2e-09	Glycosyl transferases group 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00550 AT4G00550
fragaria_vesca	FvH4_7g13530
malus_domestica	MD01G1048600.v1.1 MD07G1125900.v1.1
prunus_persica	Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1
pyrus_communis	pycom01g07380 pycom07g12000
rosa_chinensis	RchiOBHm_Chr1g0353091
rosa_laevigata	RLG00000028291
rosa_multiflora	Rmu_co8051134.1_g000001 Rmu_sc0001207.1_g000084 Rmu_sc0008840.1_g000014
rosa_roxburghii	Rroxscaffold_4G00302070
rosa_rugosa	Rorug01G0233600 Rorug01G0233600
rosa_samantha	Rh1AG247200 Rh1BG217100 Rh1CG230800 Rh1DG243200
rosa_wichuraiana	Rw0G018110 Rw1G021370 Rw1G021500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	903
Acc36I	ACCTGC	1 cut(s)	1376
AccB1I	GGYRCC	1 cut(s)	689
AccI	GTMKAC	2 cut(s)	262, 1226
AciI	CCGC	2 cut(s)	567, 801
AclWI	GGATC	2 cut(s)	12, 762
AcoI	YGGCCR	1 cut(s)	849
AcsI	RAATTY	3 cut(s)	623, 890, 1007
AcuI	CTGAAG	1 cut(s)	1107
AfaI	GTAC	2 cut(s)	672, 1249
AgsI	TTSAA	7 cut(s)	148, 247, 782, 890, 1015, 1212, 1298
AhlI	ACTAGT	1 cut(s)	160
AjnI	CCWGG	5 cut(s)	274, 573, 865, 1176, 1187
AleI	CACNNNNGTG	1 cut(s)	932
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	2 cut(s)	106, 124
AlwI	GGATC	2 cut(s)	12, 762
AoxI	GGCC	2 cut(s)	675, 849
ApeKI	GCWGC	3 cut(s)	86, 311, 830
ApoI	RAATTY	3 cut(s)	623, 890, 1007
Asp700I	GAANNNNTTC	3 cut(s)	283, 1152, 1313
AspLEI	GCGC	1 cut(s)	1081
AsuHPI	GGTGA	2 cut(s)	673, 986
BanI	GGYRCC	1 cut(s)	689
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	3 cut(s)	98, 298, 817
BccI	CCATC	4 cut(s)	98, 368, 402, 703
BceAI	ACGGC	2 cut(s)	50, 836
BcgI	CGANNNNNNTGC	2 cut(s)	1318, 1352
BciT130I	CCWGG	5 cut(s)	276, 575, 867, 1178, 1189
BclI	TGATCA	1 cut(s)	814
BcoDI	GTCTC	2 cut(s)	106, 124
BcuI	ACTAGT	1 cut(s)	160
BfaI	CTAG	3 cut(s)	161, 650, 1172
BfmI	CTRYAG	2 cut(s)	749, 1383
BfoI	RGCGCY	1 cut(s)	1082
BfuAI	ACCTGC	1 cut(s)	1376
BisI	GCNGC	4 cut(s)	87, 312, 567, 831
BlpI	GCTNAGC	1 cut(s)	1167
BlsI	GCNGC	4 cut(s)	88, 313, 568, 832
Bme1390I	CCNGG	5 cut(s)	276, 575, 867, 1178, 1189
BmiI	GGNNCC	2 cut(s)	372, 691
BmrFI	CCNGG	5 cut(s)	276, 575, 867, 1178, 1189
BmsI	GCATC	5 cut(s)	312, 1099, 1249, 1271, 1285
BpmI	CTGGAG	2 cut(s)	336, 650
Bpu10I	CCTNAGC	1 cut(s)	375
Bpu1102I	GCTNAGC	1 cut(s)	1167
BpuEI	CTTGAG	2 cut(s)	386, 725
BsaJI	CCNNGG	6 cut(s)	47, 134, 573, 865, 927, 1143
BsaWI	WCCGGW	1 cut(s)	555
Bse1I	ACTGG	3 cut(s)	61, 227, 852
Bse3DI	GCAATG	2 cut(s)	607, 972
BseBI	CCWGG	5 cut(s)	276, 575, 867, 1178, 1189
BseDI	CCNNGG	6 cut(s)	47, 134, 573, 865, 927, 1143
BseGI	GGATG	6 cut(s)	57, 303, 360, 441, 937, 1264
BseMI	GCAATG	2 cut(s)	607, 972
BseMII	CTCAG	2 cut(s)	366, 1158
BseNI	ACTGG	3 cut(s)	61, 227, 852
BseRI	GAGGAG	1 cut(s)	383
BseXI	GCAGC	3 cut(s)	98, 298, 817
BseYI	CCCAGC	1 cut(s)	1098
BsgI	GTGCAG	1 cut(s)	105
BshFI	GGCC	2 cut(s)	677, 851
BshNI	GGYRCC	1 cut(s)	689
BsiHKAI	GWGCWC	1 cut(s)	381
BsiSI	CCGG	2 cut(s)	424, 556
BsmAI	GTCTC	2 cut(s)	106, 124
BsmI	GAATGC	1 cut(s)	495
BsnI	GGCC	2 cut(s)	677, 851
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp143I	GATC	5 cut(s)	4, 151, 754, 814, 883
Bsp1720I	GCTNAGC	1 cut(s)	1167
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	2 cut(s)	567, 801
BspANI	GGCC	2 cut(s)	677, 851
BspCNI	CTCAG	2 cut(s)	367, 1159
BspLI	GGNNCC	2 cut(s)	372, 691
BspMAI	CTGCAG	2 cut(s)	753, 1387
BspMI	ACCTGC	1 cut(s)	1376
BspPI	GGATC	2 cut(s)	12, 762
BspQI	GCTCTTC	1 cut(s)	1083
BspT107I	GGYRCC	1 cut(s)	689
BsrDI	GCAATG	2 cut(s)	607, 972
BsrI	ACTGG	3 cut(s)	61, 227, 852
BssECI	CCNNGG	6 cut(s)	47, 134, 573, 865, 927, 1143
BssMI	GATC	5 cut(s)	4, 151, 754, 814, 883
BssNAI	GTATAC	1 cut(s)	263
BssT1I	CCWWGG	2 cut(s)	47, 134
Bst1107I	GTATAC	1 cut(s)	263
Bst2UI	CCWGG	5 cut(s)	276, 575, 867, 1178, 1189
Bst6I	CTCTTC	3 cut(s)	398, 1083, 1325
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstC8I	GCNNGC	6 cut(s)	40, 495, 1077, 1083, 1095, 1383
BstDEI	CTNAG	4 cut(s)	289, 375, 1157, 1167
BstDSI	CCRYGG	3 cut(s)	47, 927, 1143
BstF5I	GGATG	6 cut(s)	57, 303, 360, 441, 937, 1264
BstH2I	RGCGCY	1 cut(s)	1082
BstHHI	GCGC	1 cut(s)	1081
BstKTI	GATC	5 cut(s)	7, 154, 757, 817, 886
BstMAI	GTCTC	2 cut(s)	106, 124
BstMBI	GATC	5 cut(s)	4, 151, 754, 814, 883
BstMWI	GCNNNNNNNGC	6 cut(s)	95, 356, 742, 1072, 1099, 1382
BstNI	CCWGG	5 cut(s)	276, 575, 867, 1178, 1189
BstSCI	CCNGG	5 cut(s)	274, 573, 865, 1176, 1187
BstSFI	CTRYAG	2 cut(s)	749, 1383
BstV1I	GCAGC	3 cut(s)	98, 298, 817
BstXI	CCANNNNNNTGG	3 cut(s)	457, 841, 934
BstZ17I	GTATAC	1 cut(s)	263
BsuRI	GGCC	2 cut(s)	677, 851
BtgI	CCRYGG	3 cut(s)	47, 927, 1143
BtsCI	GGATG	6 cut(s)	57, 303, 360, 441, 937, 1264
BtsIMutI	CAGTG	1 cut(s)	220
BveI	ACCTGC	1 cut(s)	1376
Cac8I	GCNNGC	6 cut(s)	40, 495, 1077, 1083, 1095, 1383
CfoI	GCGC	1 cut(s)	1081
Csp6I	GTAC	2 cut(s)	671, 1248
CviAII	CATG	8 cut(s)	48, 387, 608, 878, 1121, 1131, 1280, 1378
CviQI	GTAC	2 cut(s)	671, 1248
DdeI	CTNAG	4 cut(s)	289, 375, 1157, 1167
DpnI	GATC	5 cut(s)	6, 153, 756, 816, 885
DpnII	GATC	5 cut(s)	4, 151, 754, 814, 883
EaeI	YGGCCR	1 cut(s)	849
Eam1104I	CTCTTC	3 cut(s)	398, 1083, 1325
EarI	CTCTTC	3 cut(s)	398, 1083, 1325
Eco130I	CCWWGG	2 cut(s)	47, 134
Eco147I	AGGCCT	1 cut(s)	677
Eco57I	CTGAAG	1 cut(s)	1107
EcoRI	GAATTC	1 cut(s)	1007
EcoRII	CCWGG	5 cut(s)	274, 573, 865, 1176, 1187
EcoT14I	CCWWGG	2 cut(s)	47, 134
EcoT22I	ATGCAT	1 cut(s)	1264
ErhI	CCWWGG	2 cut(s)	47, 134
FaeI	CATG	8 cut(s)	51, 390, 611, 881, 1124, 1134, 1283, 1381
FalI	AAGNNNNNCTT	4 cut(s)	272, 304, 486, 518
FatI	CATG	8 cut(s)	47, 386, 607, 877, 1120, 1130, 1279, 1377
FauI	CCCGC	1 cut(s)	794
FauNDI	CATATG	2 cut(s)	1039, 1270
FbaI	TGATCA	1 cut(s)	814
FblI	GTMKAC	2 cut(s)	262, 1226
Fnu4HI	GCNGC	4 cut(s)	87, 312, 567, 831
FokI	GGATG	6 cut(s)	64, 290, 347, 428, 944, 1271
Fsp4HI	GCNGC	4 cut(s)	87, 312, 567, 831
FspBI	CTAG	3 cut(s)	161, 650, 1172
GlaI	GCGC	1 cut(s)	1080
GluI	GCNGC	4 cut(s)	87, 312, 567, 831
GsaI	CCCAGC	1 cut(s)	1102
GsuI	CTGGAG	2 cut(s)	336, 650
HaeII	RGCGCY	1 cut(s)	1082
HaeIII	GGCC	2 cut(s)	677, 851
HapII	CCGG	2 cut(s)	424, 556
HhaI	GCGC	1 cut(s)	1081
Hin1II	CATG	8 cut(s)	51, 390, 611, 881, 1124, 1134, 1283, 1381
Hin6I	GCGC	1 cut(s)	1079
HinP1I	GCGC	1 cut(s)	1079
HincII	GTYRAC	2 cut(s)	70, 616
HindII	GTYRAC	2 cut(s)	70, 616
HindIII	AAGCTT	2 cut(s)	743, 1216
HinfI	GANTC	4 cut(s)	438, 612, 809, 858
HpaII	CCGG	2 cut(s)	424, 556
HphI	GGTGA	2 cut(s)	673, 986
Hpy166II	GTNNAC	6 cut(s)	70, 263, 616, 862, 1227, 1391
Hpy188I	TCNGA	4 cut(s)	253, 328, 533, 814
Hpy188III	TCNNGA	6 cut(s)	629, 824, 872, 887, 896, 1327
Hpy8I	GTNNAC	6 cut(s)	70, 263, 616, 862, 1227, 1391
HpyAV	CCTTC	4 cut(s)	53, 465, 688, 1218
HpyF10VI	GCNNNNNNNGC	6 cut(s)	95, 356, 742, 1072, 1099, 1382
HpyF3I	CTNAG	4 cut(s)	289, 375, 1157, 1167
Hsp92II	CATG	8 cut(s)	51, 390, 611, 881, 1124, 1134, 1283, 1381
HspAI	GCGC	1 cut(s)	1079
Ksp22I	TGATCA	1 cut(s)	814
Kzo9I	GATC	5 cut(s)	4, 151, 754, 814, 883
LguI	GCTCTTC	1 cut(s)	1083
LmnI	GCTCC	5 cut(s)	199, 300, 370, 717, 733
Lsp1109I	GCAGC	3 cut(s)	98, 298, 817
LweI	GCATC	5 cut(s)	312, 1099, 1249, 1271, 1285
MaeI	CTAG	3 cut(s)	161, 650, 1172
MaeIII	GTNAC	2 cut(s)	218, 872
MalI	GATC	5 cut(s)	6, 153, 756, 816, 885
MboI	GATC	5 cut(s)	4, 151, 754, 814, 883
MboII	GAAGA	9 cut(s)	415, 424, 494, 498, 718, 1003, 1100, 1321, 1342
MhlI	GDGCHC	1 cut(s)	381
MluCI	AATT	9 cut(s)	451, 520, 623, 767, 890, 1007, 1019, 1027, 1396
MlyI	GAGTC	3 cut(s)	621, 803, 867
MmeI	TCCRAC	1 cut(s)	511
Mph1103I	ATGCAT	1 cut(s)	1264
MroXI	GAANNNNTTC	3 cut(s)	283, 1152, 1313
MseI	TTAA	4 cut(s)	417, 507, 770, 1062
MslI	CAYNNNNRTG	1 cut(s)	932
MspA1I	CMGCKG	1 cut(s)	1102
MspI	CCGG	2 cut(s)	424, 556
MspR9I	CCNGG	5 cut(s)	276, 575, 867, 1178, 1189
Mva1269I	GAATGC	1 cut(s)	495
MvaI	CCWGG	5 cut(s)	276, 575, 867, 1178, 1189
MwoI	GCNNNNNNNGC	6 cut(s)	95, 356, 742, 1072, 1099, 1382
NcoI	CCATGG	1 cut(s)	47
NdeI	CATATG	2 cut(s)	1039, 1270
NdeII	GATC	5 cut(s)	4, 151, 754, 814, 883
NlaIII	CATG	8 cut(s)	51, 390, 611, 881, 1124, 1134, 1283, 1381
NlaIV	GGNNCC	2 cut(s)	372, 691
NmuCI	GTSAC	2 cut(s)	218, 872
NsiI	ATGCAT	1 cut(s)	1264
OliI	CACNNNNGTG	1 cut(s)	932
PceI	AGGCCT	1 cut(s)	677
PciSI	GCTCTTC	1 cut(s)	1083
PctI	GAATGC	1 cut(s)	495
PdmI	GAANNNNTTC	3 cut(s)	283, 1152, 1313
PfeI	GAWTC	1 cut(s)	438
PfoI	TCCNGGA	1 cut(s)	274
PkrI	GCNGC	4 cut(s)	88, 313, 568, 832
PleI	GAGTC	3 cut(s)	620, 803, 866
PpsI	GAGTC	3 cut(s)	620, 803, 866
PsiI	TTATAA	1 cut(s)	903
Psp6I	CCWGG	5 cut(s)	274, 573, 865, 1176, 1187
PspFI	CCCAGC	1 cut(s)	1098
PspGI	CCWGG	5 cut(s)	274, 573, 865, 1176, 1187
PspN4I	GGNNCC	2 cut(s)	372, 691
PstI	CTGCAG	2 cut(s)	753, 1387
PvuII	CAGCTG	1 cut(s)	1102
RsaI	GTAC	2 cut(s)	672, 1249
RsaNI	GTAC	2 cut(s)	671, 1248
RseI	CAYNNNNRTG	1 cut(s)	932
SapI	GCTCTTC	1 cut(s)	1083
SaqAI	TTAA	4 cut(s)	417, 507, 770, 1062
SatI	GCNGC	4 cut(s)	87, 312, 567, 831
Sau3AI	GATC	5 cut(s)	4, 151, 754, 814, 883
SbfI	CCTGCAGG	1 cut(s)	1387
SchI	GAGTC	3 cut(s)	621, 803, 867
ScrFI	CCNGG	5 cut(s)	276, 575, 867, 1178, 1189
SdaI	CCTGCAGG	1 cut(s)	1387
SduI	GDGCHC	1 cut(s)	381
SfaNI	GCATC	5 cut(s)	312, 1099, 1249, 1271, 1285
SfcI	CTRYAG	2 cut(s)	749, 1383
SmiMI	CAYNNNNRTG	1 cut(s)	932
SmlI	CTYRAG	2 cut(s)	365, 740
SmoI	CTYRAG	2 cut(s)	365, 740
SpeI	ACTAGT	1 cut(s)	160
Sse8387I	CCTGCAGG	1 cut(s)	1387
Sse9I	AATT	9 cut(s)	451, 520, 623, 767, 890, 1007, 1019, 1027, 1396
SseBI	AGGCCT	1 cut(s)	677
SsiI	CCGC	2 cut(s)	567, 801
SspMI	CTAG	3 cut(s)	161, 650, 1172
StuI	AGGCCT	1 cut(s)	677
StyD4I	CCNGG	5 cut(s)	274, 573, 865, 1176, 1187
StyI	CCWWGG	2 cut(s)	47, 134
TaqI	TCGA	1 cut(s)	1033
TasI	AATT	9 cut(s)	451, 520, 623, 767, 890, 1007, 1019, 1027, 1396
TatI	WGTACW	2 cut(s)	670, 1247
TauI	GCSGC	1 cut(s)	569
TfiI	GAWTC	1 cut(s)	438
Tru1I	TTAA	4 cut(s)	417, 507, 770, 1062
Tru9I	TTAA	4 cut(s)	417, 507, 770, 1062
TscAI	CASTG	1 cut(s)	227
TseFI	GTSAC	2 cut(s)	218, 872
TseI	GCWGC	3 cut(s)	86, 311, 830
Tsp45I	GTSAC	2 cut(s)	218, 872
TspDTI	ATGAA	5 cut(s)	357, 383, 596, 1020, 1119
TspGWI	ACGGA	6 cut(s)	71, 206, 212, 944, 1160, 1321
TspRI	CASTG	1 cut(s)	227
XapI	RAATTY	3 cut(s)	623, 890, 1007
XmiI	GTMKAC	2 cut(s)	262, 1226
XmnI	GAANNNNTTC	3 cut(s)	283, 1152, 1313
XspI	CTAG	3 cut(s)	161, 650, 1172
Zsp2I	ATGCAT	1 cut(s)	1264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.