Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005681

Physical Location & Seq

Genomic Coordinates Forward (+)

22405658 .. 22409034

Gene Structure 3377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00302070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGGATAAAAAGAGGCATATTGCGATTTTTACCACTGCAAGCCTTCCATGGATGACCGGAACTGCTGTCAACCCTTTGTTCCGTGCAGCGTATCTTGCAAAAGATGGGGAGAGGATTGTTAGTCTGGTCATTCCTTGGTTATCTTTGAAAGATCAAAAACTGGTGTATCCTAACAACGTCACATTTAGCTCACCGGCAGAGCAAGAGGCTTATATCCGTCACTGGCTTCATGAGAGGACTGGATTTGAATCTGATTTCAGTATACTTTTTTATCCTGGAAAGTTTTCCTTGGACAAAAGGAGCATTCTTGCTGTCGGAGATATTTCTGAGATAATTCCTGATGAAAAGGCAGATATTGCTATTCTTGAGGAGCCTGAGCACCTCACGTGGTATCATCATGGGAAGAGATGGAAAATTAAATTCCGGCTGGTTATAGGAATTATCCACACCAATTATTTGGAATATGTGAGGAGGGAGAAGAATGGAAGAATGCAAGCATTTCTTCTAAAATATGTTAATAATTGGGTTGTCAGTATATACTGTCACAAGGTAATCAGATTATCTGCTGCCACCCAGGAGTATCCTCAATCGATCATTTGCAATGTTCATGGTGTCAACCCCAAGTTTCTGGAAATAGGCAAGAAAAAGCTAGAGCAGCAACAAAATGGAAGCCAAGCCTTCAGCAAAGGTGCCTACTACATTGGGAAAATGGTGTGGAGTAAAGGCTTCAAGGAGCTGCTCAAACTTCTTCAAGACCATCAAAAGGAATTAGCTGGACTTGAGGTTGATTTATATGGAACTGGGGAAGACTCTGATCAAGTTCGGGAAGCTGCTGAAAAATTGGAACTGGCTATTAGAGTCCATCCTGGGCGTGATCATGCTGATCTTGAATTTCATGATTATAAAGTGTTCCTGAACCCAAGCACCACAGATGTGGTTTGCACGACCACAGCAGAAGCATTGGCAATGGGTAAAATTGTTGTGTGCGCCAATCACCCCTCGAATGACTTCTTCAAGCAGTTCCCAAATTGCCGAACATATGACAATGGTGATGGGTTTGTCAAGCTGACACAGCAAGCACTGGCTGAACAGCCTGCGCAGCTTACTGAGGCACAAAGCGAAACTGTCAGAAACTCCTTCAAAGAACTTTATGTCTACGTCATTGAACTTGGGGGTAAGATGGAAACTGCATCTGCATATGTGCATCATGTGTCATCTGGTTTTGAAGTAACGCGGAGGATTTTTGGTGCAATCCCAAGGAGTTTGCAACCAGATGAAGAGCAATGCAAGGAGCTTGGGCTGGCTGTTCCTGCTGGCAAGCAAGGCTCCGGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006643 GO:0006664 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008610 GO:0009058 GO:0009247 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0009987 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019375 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0035250 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1901137 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_trans_1_4 Glycos_transf_1

Protein Analysis

445

Amino Acids

50.5

Weight (kDa)

7.27

Isoelectric Point (pI)

36.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glycos_transf_1	PF00534	219 - 334	2.3e-10	Glycosyl transferases group 1
Glyco_trans_1_4	PF13692	232 - 334	6e-09	Glycosyl transferases group 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00550 AT4G00550
fragaria_vesca	FvH4_7g13530
malus_domestica	MD01G1048600.v1.1 MD07G1125900.v1.1
prunus_persica	Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1
pyrus_communis	pycom01g07380 pycom07g12000
rosa_chinensis	RchiOBHm_Chr1g0353091
rosa_laevigata	RLG00000028291
rosa_multiflora	Rmu_co8051134.1_g000001 Rmu_sc0001207.1_g000084 Rmu_sc0008840.1_g000014
rosa_roxburghii	Rroxscaffold_4G00302070
rosa_rugosa	Rorug01G0233600 Rorug01G0233600
rosa_samantha	Rh1AG247200 Rh1BG217100 Rh1CG230800 Rh1DG243200
rosa_wichuraiana	Rw0G018110 Rw1G021370 Rw1G021500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	903
Acc16I	TGCGCA	1 cut(s)	1098
AccB1I	GGYRCC	1 cut(s)	689
AccI	GTMKAC	2 cut(s)	262, 1155
AccII	CGCG	1 cut(s)	1234
AccIII	TCCGGA	1 cut(s)	1328
AciI	CCGC	1 cut(s)	1234
AcsI	RAATTY	2 cut(s)	419, 890
AcuI	CTGAAG	1 cut(s)	664
AcvI	CACGTG	1 cut(s)	387
AfiI	CCNNNNNNNGG	1 cut(s)	763
AgsI	TTSAA	9 cut(s)	148, 248, 730, 752, 890, 1015, 1141, 1166, 1226
AjnI	CCWGG	3 cut(s)	274, 573, 865
AleI	CACNNNNGTG	1 cut(s)	932
AluBI	AGCT	8 cut(s)	189, 649, 736, 773, 830, 1066, 1102, 1294
AluI	AGCT	8 cut(s)	189, 649, 736, 773, 830, 1066, 1102, 1294
Alw21I	GWGCWC	1 cut(s)	381
Aor13HI	TCCGGA	1 cut(s)	1328
ApeKI	GCWGC	6 cut(s)	86, 566, 655, 736, 830, 1099
ApoI	RAATTY	2 cut(s)	419, 890
Asp700I	GAANNNNTTC	2 cut(s)	283, 1007
AspLEI	GCGC	2 cut(s)	989, 1099
AsuHPI	GGTGA	3 cut(s)	183, 986, 1061
BaeI	ACNNNNGTAYC	2 cut(s)	149, 182
BanI	GGYRCC	1 cut(s)	689
BbrPI	CACGTG	1 cut(s)	387
BbsI	GAAGAC	1 cut(s)	813
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	6 cut(s)	98, 553, 667, 723, 817, 1111
BccI	CCATC	6 cut(s)	98, 402, 765, 870, 1046, 1174
BciT130I	CCWGG	3 cut(s)	276, 575, 867
BciVI	GTATCC	2 cut(s)	177, 591
BclI	TGATCA	2 cut(s)	814, 874
BfaI	CTAG	1 cut(s)	650
BfuI	GTATCC	2 cut(s)	177, 591
BisI	GCNGC	6 cut(s)	87, 567, 656, 737, 831, 1100
BlsI	GCNGC	6 cut(s)	88, 568, 657, 738, 832, 1101
Bme1390I	CCNGG	3 cut(s)	276, 575, 867
BmiI	GGNNCC	3 cut(s)	372, 691, 1327
BmrFI	CCNGG	3 cut(s)	276, 575, 867
BmrI	ACTGGG	1 cut(s)	810
BmsI	GCATC	2 cut(s)	1199, 1213
BmuI	ACTGGG	1 cut(s)	810
BpiI	GAAGAC	1 cut(s)	813
Bpu10I	CCTNAGC	1 cut(s)	375
BpuEI	CTTGAG	2 cut(s)	386, 800
Bsa29I	ATCGAT	1 cut(s)	590
BsaAI	YACGTR	1 cut(s)	387
BsaBI	GATNNNNATC	1 cut(s)	247
BsaJI	CCNNGG	6 cut(s)	47, 134, 288, 573, 866, 1256
BsaWI	WCCGGW	2 cut(s)	56, 1328
Bsc4I	CCNNNNNNNGG	1 cut(s)	763
Bse118I	RCCGGY	1 cut(s)	193
Bse1I	ACTGG	6 cut(s)	165, 227, 244, 805, 852, 1086
Bse3DI	GCAATG	3 cut(s)	607, 972, 1289
Bse8I	GATNNNNATC	1 cut(s)	247
BseAI	TCCGGA	1 cut(s)	1328
BseBI	CCWGG	3 cut(s)	276, 575, 867
BseCI	ATCGAT	1 cut(s)	590
BseDI	CCNNGG	6 cut(s)	47, 134, 288, 573, 866, 1256
BseGI	GGATG	2 cut(s)	57, 862
BseJI	GATNNNNATC	1 cut(s)	247
BseLI	CCNNNNNNNGG	1 cut(s)	763
BseMI	GCAATG	3 cut(s)	607, 972, 1289
BseMII	CTCAG	3 cut(s)	318, 366, 1098
BseNI	ACTGG	6 cut(s)	165, 227, 244, 805, 852, 1086
BseRI	GAGGAG	2 cut(s)	383, 484
BseXI	GCAGC	6 cut(s)	98, 553, 667, 723, 817, 1111
BsgI	GTGCAG	1 cut(s)	105
Bsh1236I	CGCG	1 cut(s)	1234
BshNI	GGYRCC	1 cut(s)	689
BshVI	ATCGAT	1 cut(s)	590
BsiHKAI	GWGCWC	1 cut(s)	381
BsiSI	CCGG	4 cut(s)	57, 194, 424, 1329
BslI	CCNNNNNNNGG	1 cut(s)	763
BsmI	GAATGC	2 cut(s)	303, 495
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp13I	TCCGGA	1 cut(s)	1328
Bsp143I	GATC	5 cut(s)	151, 591, 814, 874, 883
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	1 cut(s)	1234
BspCNI	CTCAG	3 cut(s)	319, 367, 1099
BspDI	ATCGAT	1 cut(s)	590
BspEI	TCCGGA	1 cut(s)	1328
BspFNI	CGCG	1 cut(s)	1234
BspHI	TCATGA	2 cut(s)	229, 895
BspLI	GGNNCC	3 cut(s)	372, 691, 1327
BspQI	GCTCTTC	1 cut(s)	1272
BspT107I	GGYRCC	1 cut(s)	689
BsrDI	GCAATG	3 cut(s)	607, 972, 1289
BsrFI	RCCGGY	1 cut(s)	193
BsrI	ACTGG	6 cut(s)	165, 227, 244, 805, 852, 1086
BssAI	RCCGGY	1 cut(s)	193
BssECI	CCNNGG	6 cut(s)	47, 134, 288, 573, 866, 1256
BssMI	GATC	5 cut(s)	151, 591, 814, 874, 883
BssNAI	GTATAC	1 cut(s)	263
BssT1I	CCWWGG	4 cut(s)	47, 134, 288, 1256
Bst1107I	GTATAC	1 cut(s)	263
Bst2UI	CCWGG	3 cut(s)	276, 575, 867
Bst4CI	ACNGT	2 cut(s)	542, 1126
Bst6I	CTCTTC	2 cut(s)	398, 1272
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstBAI	YACGTR	1 cut(s)	387
BstC8I	GCNNGC	7 cut(s)	40, 495, 1077, 1095, 1302, 1315, 1319
BstDEI	CTNAG	3 cut(s)	327, 375, 1107
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	2 cut(s)	57, 862
BstFNI	CGCG	1 cut(s)	1234
BstHHI	GCGC	2 cut(s)	989, 1099
BstKTI	GATC	5 cut(s)	154, 594, 817, 877, 886
BstMBI	GATC	5 cut(s)	151, 591, 814, 874, 883
BstMWI	GCNNNNNNNGC	7 cut(s)	95, 356, 655, 1072, 1099, 1310, 1323
BstNI	CCWGG	3 cut(s)	276, 575, 867
BstSCI	CCNGG	3 cut(s)	274, 573, 865
BstUI	CGCG	1 cut(s)	1234
BstV1I	GCAGC	6 cut(s)	98, 553, 667, 723, 817, 1111
BstV2I	GAAGAC	1 cut(s)	813
BstXI	CCANNNNNNTGG	3 cut(s)	457, 628, 934
BstZ17I	GTATAC	1 cut(s)	263
Bsu15I	ATCGAT	1 cut(s)	590
BsuI	GTATCC	2 cut(s)	177, 591
BsuTUI	ATCGAT	1 cut(s)	590
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	57, 862
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	3 cut(s)	33, 220, 1079
Cac8I	GCNNGC	7 cut(s)	40, 495, 1077, 1095, 1302, 1315, 1319
CciI	TCATGA	2 cut(s)	229, 895
CfoI	GCGC	2 cut(s)	989, 1099
Cfr10I	RCCGGY	1 cut(s)	193
ClaI	ATCGAT	1 cut(s)	590
CviAII	CATG	7 cut(s)	48, 230, 398, 608, 878, 896, 1208
DdeI	CTNAG	3 cut(s)	327, 375, 1107
DpnI	GATC	5 cut(s)	153, 593, 816, 876, 885
DpnII	GATC	5 cut(s)	151, 591, 814, 874, 883
Eam1104I	CTCTTC	2 cut(s)	398, 1272
EarI	CTCTTC	2 cut(s)	398, 1272
Eco130I	CCWWGG	4 cut(s)	47, 134, 288, 1256
Eco57I	CTGAAG	1 cut(s)	664
Eco72I	CACGTG	1 cut(s)	387
EcoRII	CCWGG	3 cut(s)	274, 573, 865
EcoT14I	CCWWGG	4 cut(s)	47, 134, 288, 1256
ErhI	CCWWGG	4 cut(s)	47, 134, 288, 1256
FaeI	CATG	7 cut(s)	51, 233, 401, 611, 881, 899, 1211
FalI	AAGNNNNNCTT	4 cut(s)	272, 304, 486, 518
FatI	CATG	7 cut(s)	47, 229, 397, 607, 877, 895, 1207
FauNDI	CATATG	2 cut(s)	1039, 1198
FbaI	TGATCA	2 cut(s)	814, 874
FblI	GTMKAC	2 cut(s)	262, 1155
Fnu4HI	GCNGC	6 cut(s)	87, 567, 656, 737, 831, 1100
FokI	GGATG	2 cut(s)	64, 849
Fsp4HI	GCNGC	6 cut(s)	87, 567, 656, 737, 831, 1100
FspBI	CTAG	1 cut(s)	650
FspI	TGCGCA	1 cut(s)	1098
GlaI	GCGC	2 cut(s)	988, 1098
GluI	GCNGC	6 cut(s)	87, 567, 656, 737, 831, 1100
HapII	CCGG	4 cut(s)	57, 194, 424, 1329
HhaI	GCGC	2 cut(s)	989, 1099
Hin1II	CATG	7 cut(s)	51, 233, 401, 611, 881, 899, 1211
Hin6I	GCGC	2 cut(s)	987, 1097
HinP1I	GCGC	2 cut(s)	987, 1097
HincII	GTYRAC	2 cut(s)	70, 616
HindII	GTYRAC	2 cut(s)	70, 616
HinfI	GANTC	3 cut(s)	248, 809, 858
HpaII	CCGG	4 cut(s)	57, 194, 424, 1329
HphI	GGTGA	3 cut(s)	183, 986, 1061
Hpy166II	GTNNAC	4 cut(s)	70, 263, 616, 1156
Hpy188I	TCNGA	6 cut(s)	253, 317, 328, 557, 814, 1130
Hpy8I	GTNNAC	4 cut(s)	70, 263, 616, 1156
HpyAV	CCTTC	3 cut(s)	53, 688, 1147
HpyCH4III	ACNGT	2 cut(s)	542, 1126
HpyCH4IV	ACGT	3 cut(s)	177, 386, 1158
HpyF10VI	GCNNNNNNNGC	7 cut(s)	95, 356, 655, 1072, 1099, 1310, 1323
HpyF3I	CTNAG	3 cut(s)	327, 375, 1107
HpySE526I	ACGT	3 cut(s)	177, 386, 1158
Hsp92II	CATG	7 cut(s)	51, 233, 401, 611, 881, 899, 1211
HspAI	GCGC	2 cut(s)	987, 1097
Kpn2I	TCCGGA	1 cut(s)	1328
Ksp22I	TGATCA	2 cut(s)	814, 874
Kzo9I	GATC	5 cut(s)	151, 591, 814, 874, 883
LguI	GCTCTTC	1 cut(s)	1272
LmnI	GCTCC	5 cut(s)	300, 370, 733, 1291, 1331
Lsp1109I	GCAGC	6 cut(s)	98, 553, 667, 723, 817, 1111
LweI	GCATC	2 cut(s)	1199, 1213
MaeI	CTAG	1 cut(s)	650
MaeII	ACGT	3 cut(s)	177, 386, 1158
MaeIII	GTNAC	4 cut(s)	178, 218, 542, 1228
MalI	GATC	5 cut(s)	153, 593, 816, 876, 885
MboI	GATC	5 cut(s)	151, 591, 814, 874, 883
MboII	GAAGA	8 cut(s)	415, 490, 494, 498, 740, 818, 1003, 1289
MhlI	GDGCHC	1 cut(s)	381
MlyI	GAGTC	2 cut(s)	803, 867
MmeI	TCCRAC	1 cut(s)	295
MroI	TCCGGA	1 cut(s)	1328
MroXI	GAANNNNTTC	2 cut(s)	283, 1007
MseI	TTAA	2 cut(s)	417, 516
MslI	CAYNNNNRTG	1 cut(s)	932
MspI	CCGG	4 cut(s)	57, 194, 424, 1329
MspR9I	CCNGG	3 cut(s)	276, 575, 867
Mva1269I	GAATGC	2 cut(s)	303, 495
MvaI	CCWGG	3 cut(s)	276, 575, 867
MvnI	CGCG	1 cut(s)	1234
MwoI	GCNNNNNNNGC	7 cut(s)	95, 356, 655, 1072, 1099, 1310, 1323
NcoI	CCATGG	1 cut(s)	47
NdeI	CATATG	2 cut(s)	1039, 1198
NdeII	GATC	5 cut(s)	151, 591, 814, 874, 883
NlaIII	CATG	7 cut(s)	51, 233, 401, 611, 881, 899, 1211
NlaIV	GGNNCC	3 cut(s)	372, 691, 1327
NmuCI	GTSAC	3 cut(s)	178, 218, 542
NsbI	TGCGCA	1 cut(s)	1098
OliI	CACNNNNGTG	1 cut(s)	932
PagI	TCATGA	2 cut(s)	229, 895
PciSI	GCTCTTC	1 cut(s)	1272
PctI	GAATGC	2 cut(s)	303, 495
PdmI	GAANNNNTTC	2 cut(s)	283, 1007
PfeI	GAWTC	1 cut(s)	248
PfoI	TCCNGGA	1 cut(s)	274
PkrI	GCNGC	6 cut(s)	88, 568, 657, 738, 832, 1101
PleI	GAGTC	2 cut(s)	803, 866
PmaCI	CACGTG	1 cut(s)	387
PmlI	CACGTG	1 cut(s)	387
PpsI	GAGTC	2 cut(s)	803, 866
Ppu21I	YACGTR	1 cut(s)	387
PsiI	TTATAA	1 cut(s)	903
Psp6I	CCWGG	3 cut(s)	274, 573, 865
PspCI	CACGTG	1 cut(s)	387
PspGI	CCWGG	3 cut(s)	274, 573, 865
PspN4I	GGNNCC	3 cut(s)	372, 691, 1327
RseI	CAYNNNNRTG	1 cut(s)	932
SapI	GCTCTTC	1 cut(s)	1272
SaqAI	TTAA	2 cut(s)	417, 516
SatI	GCNGC	6 cut(s)	87, 567, 656, 737, 831, 1100
Sau3AI	GATC	5 cut(s)	151, 591, 814, 874, 883
SchI	GAGTC	2 cut(s)	803, 867
ScrFI	CCNGG	3 cut(s)	276, 575, 867
SduI	GDGCHC	1 cut(s)	381
SfaNI	GCATC	2 cut(s)	1199, 1213
SmiMI	CAYNNNNRTG	1 cut(s)	932
SmlI	CTYRAG	2 cut(s)	365, 779
SmoI	CTYRAG	2 cut(s)	365, 779
SsiI	CCGC	1 cut(s)	1234
SspMI	CTAG	1 cut(s)	650
StyD4I	CCNGG	3 cut(s)	274, 573, 865
StyI	CCWWGG	4 cut(s)	47, 134, 288, 1256
TaaI	ACNGT	2 cut(s)	542, 1126
TaiI	ACGT	3 cut(s)	180, 389, 1161
TaqI	TCGA	2 cut(s)	590, 1001
TfiI	GAWTC	1 cut(s)	248
Tru1I	TTAA	2 cut(s)	417, 516
Tru9I	TTAA	2 cut(s)	417, 516
TscAI	CASTG	3 cut(s)	40, 227, 1086
TseFI	GTSAC	3 cut(s)	178, 218, 542
TseI	GCWGC	6 cut(s)	86, 566, 655, 736, 830, 1099
Tsp45I	GTSAC	3 cut(s)	178, 218, 542
TspDTI	ATGAA	5 cut(s)	218, 357, 596, 884, 1290
TspGWI	ACGGA	2 cut(s)	71, 206
TspRI	CASTG	3 cut(s)	40, 227, 1086
XapI	RAATTY	2 cut(s)	419, 890
XmiI	GTMKAC	2 cut(s)	262, 1155
XmnI	GAANNNNTTC	2 cut(s)	283, 1007
XspI	CTAG	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.