Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8051134.1

Orthogroup ID

OG0005681

Physical Location & Seq

Genomic Coordinates Forward (+)

6 .. 449

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8051134.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atgggtaaaattgttgtgtgcgccaatcacccctcgaatgacttcttcaagcagttcccaaattgccgaacatatgacaatggtgatgggtttgtcaagctcacacagcaagcactggctgaacagcctgcgcagcttactgaggcacaaaggtatgagctttcatgggcggctgccaccgaacggtttttaaggtgtgctgagctagaaaaggcatcgacagcgaaactggcagaatctccctcaaagaactttatgtctacgtcattgaacttggggggtaagatggaaactgcatctgcatatgtgcatcatgtgacatctggttttgaagtaacgcggaggatttttggtgcgatcccaaggagtttgcaaccagatgaagagcaatgcaaggagcttgggctggctgttcctgctggcaagcaaggctccggaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006643 GO:0006664 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008610 GO:0009058 GO:0009247 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0009987 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019375 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0035250 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1901137 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_trans_1_4 Glycos_transf_1

Protein Analysis

147

Amino Acids

16.09

Weight (kDa)

7.67

Isoelectric Point (pI)

39.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00550 AT4G00550
fragaria_vesca	FvH4_7g13530
malus_domestica	MD01G1048600.v1.1 MD07G1125900.v1.1
prunus_persica	Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1
pyrus_communis	pycom01g07380 pycom07g12000
rosa_chinensis	RchiOBHm_Chr1g0353091
rosa_laevigata	RLG00000028291
rosa_multiflora	Rmu_co8051134.1_g000001 Rmu_sc0001207.1_g000084 Rmu_sc0008840.1_g000014
rosa_roxburghii	Rroxscaffold_4G00302070
rosa_rugosa	Rorug01G0233600 Rorug01G0233600
rosa_samantha	Rh1AG247200 Rh1BG217100 Rh1CG230800 Rh1DG243200
rosa_wichuraiana	Rw0G018110 Rw1G021370 Rw1G021500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	132
AccI	GTMKAC	1 cut(s)	260
AccII	CGCG	1 cut(s)	340
AccIII	TCCGGA	1 cut(s)	434
AciI	CCGC	2 cut(s)	170, 340
AclWI	GGATC	1 cut(s)	352
AfiI	CCNNNNNNNGG	1 cut(s)	183
AgsI	TTSAA	3 cut(s)	49, 271, 332
AluBI	AGCT	5 cut(s)	100, 136, 160, 205, 400
AluI	AGCT	5 cut(s)	100, 136, 160, 205, 400
AlwI	GGATC	1 cut(s)	352
Aor13HI	TCCGGA	1 cut(s)	434
ApeKI	GCWGC	2 cut(s)	133, 173
Asp700I	GAANNNNTTC	1 cut(s)	41
AspLEI	GCGC	2 cut(s)	23, 133
AsuHPI	GGTGA	2 cut(s)	20, 95
BbvI	GCAGC	2 cut(s)	145, 160
BccI	CCATC	2 cut(s)	80, 280
BfaI	CTAG	1 cut(s)	206
BisI	GCNGC	3 cut(s)	134, 171, 174
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	3 cut(s)	135, 172, 175
BmiI	GGNNCC	1 cut(s)	433
BmsI	GCATC	3 cut(s)	224, 305, 319
Bpu1102I	GCTNAGC	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	362
BsaWI	WCCGGW	1 cut(s)	434
Bsc4I	CCNNNNNNNGG	1 cut(s)	183
Bse1I	ACTGG	2 cut(s)	120, 234
Bse3DI	GCAATG	1 cut(s)	395
BseAI	TCCGGA	1 cut(s)	434
BseDI	CCNNGG	1 cut(s)	362
BseLI	CCNNNNNNNGG	1 cut(s)	183
BseMI	GCAATG	1 cut(s)	395
BseMII	CTCAG	2 cut(s)	132, 192
BseNI	ACTGG	2 cut(s)	120, 234
BseXI	GCAGC	2 cut(s)	145, 160
Bsh1236I	CGCG	1 cut(s)	340
BsiSI	CCGG	1 cut(s)	435
BslI	CCNNNNNNNGG	1 cut(s)	183
Bsp13I	TCCGGA	1 cut(s)	434
Bsp143I	GATC	1 cut(s)	357
Bsp1720I	GCTNAGC	1 cut(s)	201
BspACI	CCGC	2 cut(s)	170, 340
BspCNI	CTCAG	2 cut(s)	133, 193
BspEI	TCCGGA	1 cut(s)	434
BspFNI	CGCG	1 cut(s)	340
BspLI	GGNNCC	1 cut(s)	433
BspPI	GGATC	1 cut(s)	352
BspQI	GCTCTTC	1 cut(s)	378
BsrDI	GCAATG	1 cut(s)	395
BsrI	ACTGG	2 cut(s)	120, 234
BssECI	CCNNGG	1 cut(s)	362
BssMI	GATC	1 cut(s)	357
BssT1I	CCWWGG	1 cut(s)	362
Bst4CI	ACNGT	1 cut(s)	186
Bst6I	CTCTTC	1 cut(s)	378
BstC8I	GCNNGC	5 cut(s)	111, 129, 408, 421, 425
BstDEI	CTNAG	2 cut(s)	141, 201
BstFNI	CGCG	1 cut(s)	340
BstHHI	GCGC	2 cut(s)	23, 133
BstKTI	GATC	1 cut(s)	360
BstMBI	GATC	1 cut(s)	357
BstMWI	GCNNNNNNNGC	6 cut(s)	106, 133, 221, 230, 416, 429
BstUI	CGCG	1 cut(s)	340
BstV1I	GCAGC	2 cut(s)	145, 160
BtsIMutI	CAGTG	1 cut(s)	113
Cac8I	GCNNGC	5 cut(s)	111, 129, 408, 421, 425
CfoI	GCGC	2 cut(s)	23, 133
CviAII	CATG	2 cut(s)	165, 314
DdeI	CTNAG	2 cut(s)	141, 201
DpnI	GATC	1 cut(s)	359
DpnII	GATC	1 cut(s)	357
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Eco130I	CCWWGG	1 cut(s)	362
EcoT14I	CCWWGG	1 cut(s)	362
ErhI	CCWWGG	1 cut(s)	362
FaeI	CATG	2 cut(s)	168, 317
FaiI	YATR	8 cut(s)	73, 75, 156, 166, 257, 304, 306, 315
FatI	CATG	2 cut(s)	164, 313
FauNDI	CATATG	2 cut(s)	73, 304
FblI	GTMKAC	1 cut(s)	260
Fnu4HI	GCNGC	3 cut(s)	134, 171, 174
Fsp4HI	GCNGC	3 cut(s)	134, 171, 174
FspBI	CTAG	1 cut(s)	206
FspI	TGCGCA	1 cut(s)	132
GlaI	GCGC	2 cut(s)	22, 132
GluI	GCNGC	3 cut(s)	134, 171, 174
HapII	CCGG	1 cut(s)	435
HhaI	GCGC	2 cut(s)	23, 133
Hin1II	CATG	2 cut(s)	168, 317
Hin6I	GCGC	2 cut(s)	21, 131
HinP1I	GCGC	2 cut(s)	21, 131
HinfI	GANTC	1 cut(s)	236
HpaII	CCGG	1 cut(s)	435
HphI	GGTGA	2 cut(s)	20, 95
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188III	TCNNGA	1 cut(s)	435
Hpy8I	GTNNAC	1 cut(s)	261
HpyCH4III	ACNGT	1 cut(s)	186
HpyCH4IV	ACGT	1 cut(s)	263
HpyCH4V	TGCA	5 cut(s)	296, 302, 310, 373, 393
HpyF10VI	GCNNNNNNNGC	6 cut(s)	106, 133, 221, 230, 416, 429
HpyF3I	CTNAG	2 cut(s)	141, 201
HpySE526I	ACGT	1 cut(s)	263
Hsp92II	CATG	2 cut(s)	168, 317
HspAI	GCGC	2 cut(s)	21, 131
Kpn2I	TCCGGA	1 cut(s)	434
Kzo9I	GATC	1 cut(s)	357
LguI	GCTCTTC	1 cut(s)	378
LmnI	GCTCC	2 cut(s)	397, 437
LpnPI	CCDG	8 cut(s)	101, 141, 215, 309, 390, 392, 405, 429
Lsp1109I	GCAGC	2 cut(s)	145, 160
LweI	GCATC	3 cut(s)	224, 305, 319
MaeI	CTAG	1 cut(s)	206
MaeII	ACGT	1 cut(s)	263
MaeIII	GTNAC	2 cut(s)	316, 334
MalI	GATC	1 cut(s)	359
MboI	GATC	1 cut(s)	357
MboII	GAAGA	2 cut(s)	37, 395
MluCI	AATT	2 cut(s)	9, 61
MnlI	CCTC	4 cut(s)	43, 136, 253, 336
MroI	TCCGGA	1 cut(s)	434
MroXI	GAANNNNTTC	1 cut(s)	41
MseI	TTAA	1 cut(s)	191
MspI	CCGG	1 cut(s)	435
MvnI	CGCG	1 cut(s)	340
MwoI	GCNNNNNNNGC	6 cut(s)	106, 133, 221, 230, 416, 429
NdeI	CATATG	2 cut(s)	73, 304
NdeII	GATC	1 cut(s)	357
NlaIII	CATG	2 cut(s)	168, 317
NlaIV	GGNNCC	1 cut(s)	433
NmuCI	GTSAC	1 cut(s)	316
NsbI	TGCGCA	1 cut(s)	132
PciSI	GCTCTTC	1 cut(s)	378
PdmI	GAANNNNTTC	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	236
PkrI	GCNGC	3 cut(s)	135, 172, 175
PspN4I	GGNNCC	1 cut(s)	433
SapI	GCTCTTC	1 cut(s)	378
SaqAI	TTAA	1 cut(s)	191
SatI	GCNGC	3 cut(s)	134, 171, 174
Sau3AI	GATC	1 cut(s)	357
SetI	ASST	8 cut(s)	102, 138, 155, 162, 197, 207, 266, 402
SfaNI	GCATC	3 cut(s)	224, 305, 319
Sse9I	AATT	2 cut(s)	9, 61
SsiI	CCGC	2 cut(s)	170, 340
SspMI	CTAG	1 cut(s)	206
StyI	CCWWGG	1 cut(s)	362
TaaI	ACNGT	1 cut(s)	186
TaiI	ACGT	1 cut(s)	266
TaqI	TCGA	2 cut(s)	35, 218
TasI	AATT	2 cut(s)	9, 61
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	236
Tru1I	TTAA	1 cut(s)	191
Tru9I	TTAA	1 cut(s)	191
TscAI	CASTG	1 cut(s)	120
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	2 cut(s)	133, 173
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	2 cut(s)	153, 396
TspRI	CASTG	1 cut(s)	120
XmiI	GTMKAC	1 cut(s)	260
XmnI	GAANNNNTTC	1 cut(s)	41
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.