Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005681

Physical Location & Seq

Genomic Coordinates Forward (+)

13326144 .. 13328939

Gene Structure 2796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g12000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGCATTCACATAATGCCATGCTGATCTTCAATTTCACGATTATAAAGTATTCCTCAATCCAAGCACAACGGATGTGCTTTGCACAACAACGGCAGAAGCATTGGCAATGGGTAAAATCGTTGTATGTGCCAATCACCCCTCAAATGAATTCTTCAAGCAGTTCCCGAATTGCCGCACATATGACAATGCTGATGGGTTTGTTAAGGTCACACAGCAGGCATGAGCTTTCATGGGAAGCTGCCACAGAAAGATTTCTACGGGTTGCTGAGCTAGACCAGGCATTTACAAGGAAACCGTCGAAAAGTAATTCGAAAAGATTTATGTCTACCTCATTAGGCCTTTGGAGTAGTGTGGAGGATGCATCGGCATATGTGCATCATGTGGCTTCTGGTTTTGAAACAACAAGAAAGATATTCGGTGCAATCCCGAAGAGTTTGCAACCAGATGAGGAACAATGTAAGGAGCTTGGGCTGGCCATACCTGCAGGTAAACGAGGTTCACGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006643 GO:0006664 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008610 GO:0009058 GO:0009247 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0009987 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019375 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0035250 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1901137 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_trans_1_4 Glycos_transf_1

Protein Analysis

170

Amino Acids

19.26

Weight (kDa)

10.12

Isoelectric Point (pI)

47.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00550 AT4G00550
fragaria_vesca	FvH4_7g13530
malus_domestica	MD01G1048600.v1.1 MD07G1125900.v1.1
prunus_persica	Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1
pyrus_communis	pycom01g07380 pycom07g12000
rosa_chinensis	RchiOBHm_Chr1g0353091
rosa_laevigata	RLG00000028291
rosa_multiflora	Rmu_co8051134.1_g000001 Rmu_sc0001207.1_g000084 Rmu_sc0008840.1_g000014
rosa_roxburghii	Rroxscaffold_4G00302070
rosa_rugosa	Rorug01G0233600 Rorug01G0233600
rosa_samantha	Rh1AG247200 Rh1BG217100 Rh1CG230800 Rh1DG243200
rosa_wichuraiana	Rw0G018110 Rw1G021370 Rw1G021500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	44
Acc36I	ACCTGC	2 cut(s)	476, 490
AccI	GTMKAC	1 cut(s)	326
AciI	CCGC	1 cut(s)	174
AcoI	YGGCCR	1 cut(s)	474
AcsI	RAATTY	1 cut(s)	148
AgsI	TTSAA	3 cut(s)	31, 156, 398
AjnI	CCWGG	1 cut(s)	276
AluBI	AGCT	4 cut(s)	226, 239, 271, 466
AluI	AGCT	4 cut(s)	226, 239, 271, 466
AoxI	GGCC	2 cut(s)	337, 474
ApeKI	GCWGC	1 cut(s)	239
ApoI	RAATTY	1 cut(s)	148
Asp700I	GAANNNNTTC	1 cut(s)	252
AsuHPI	GGTGA	1 cut(s)	127
AsuII	TTCGAA	1 cut(s)	311
BalI	TGGCCA	1 cut(s)	476
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	1 cut(s)	187
BceAI	ACGGC	1 cut(s)	107
BcgI	CGANNNNNNTGC	2 cut(s)	418, 452
BciT130I	CCWGG	1 cut(s)	278
BfaI	CTAG	1 cut(s)	272
BfmI	CTRYAG	1 cut(s)	483
BfuAI	ACCTGC	2 cut(s)	476, 490
BisI	GCNGC	2 cut(s)	174, 240
BlpI	GCTNAGC	1 cut(s)	267
BlsI	GCNGC	2 cut(s)	175, 241
Bme1390I	CCNGG	1 cut(s)	278
BmrFI	CCNGG	1 cut(s)	278
BmsI	GCATC	3 cut(s)	349, 371, 385
Bpu1102I	GCTNAGC	1 cut(s)	267
Bpu14I	TTCGAA	1 cut(s)	311
Bse3DI	GCAATG	1 cut(s)	113
BseBI	CCWGG	1 cut(s)	278
BseGI	GGATG	2 cut(s)	78, 364
BseMI	GCAATG	1 cut(s)	113
BseMII	CTCAG	1 cut(s)	258
BseXI	GCAGC	1 cut(s)	226
BshFI	GGCC	2 cut(s)	339, 476
BsmI	GAATGC	1 cut(s)	4
BsnI	GGCC	2 cut(s)	339, 476
Bsp119I	TTCGAA	1 cut(s)	311
Bsp143I	GATC	1 cut(s)	24
Bsp1720I	GCTNAGC	1 cut(s)	267
BspACI	CCGC	1 cut(s)	174
BspANI	GGCC	2 cut(s)	339, 476
BspCNI	CTCAG	1 cut(s)	259
BspMAI	CTGCAG	1 cut(s)	487
BspMI	ACCTGC	2 cut(s)	476, 490
BspT104I	TTCGAA	1 cut(s)	311
BsrDI	GCAATG	1 cut(s)	113
BssMI	GATC	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	1 cut(s)	297
Bst6I	CTCTTC	1 cut(s)	425
BstBI	TTCGAA	1 cut(s)	311
BstC8I	GCNNGC	2 cut(s)	218, 474
BstDEI	CTNAG	1 cut(s)	267
BstF5I	GGATG	2 cut(s)	78, 364
BstKTI	GATC	1 cut(s)	27
BstMBI	GATC	1 cut(s)	24
BstMWI	GCNNNNNNNGC	1 cut(s)	482
BstNI	CCWGG	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	276
BstSFI	CTRYAG	1 cut(s)	483
BstV1I	GCAGC	1 cut(s)	226
BsuRI	GGCC	2 cut(s)	339, 476
BtsCI	GGATG	2 cut(s)	78, 364
BveI	ACCTGC	2 cut(s)	476, 490
Cac8I	GCNNGC	2 cut(s)	218, 474
CviAII	CATG	4 cut(s)	19, 221, 231, 380
CviJI	RGCY	8 cut(s)	226, 239, 271, 339, 386, 466, 472, 476
CviKI_1	RGCY	8 cut(s)	226, 239, 271, 339, 386, 466, 472, 476
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
EaeI	YGGCCR	1 cut(s)	474
Eam1104I	CTCTTC	1 cut(s)	425
EarI	CTCTTC	1 cut(s)	425
Eco147I	AGGCCT	1 cut(s)	339
EcoRI	GAATTC	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	276
EcoT22I	ATGCAT	2 cut(s)	6, 364
FaeI	CATG	4 cut(s)	22, 224, 234, 383
FatI	CATG	4 cut(s)	18, 220, 230, 379
FauNDI	CATATG	2 cut(s)	180, 370
FblI	GTMKAC	1 cut(s)	326
Fnu4HI	GCNGC	2 cut(s)	174, 240
FokI	GGATG	2 cut(s)	85, 371
Fsp4HI	GCNGC	2 cut(s)	174, 240
FspBI	CTAG	1 cut(s)	272
GluI	GCNGC	2 cut(s)	174, 240
HaeIII	GGCC	2 cut(s)	339, 476
Hin1II	CATG	4 cut(s)	22, 224, 234, 383
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	3 cut(s)	327, 491, 500
Hpy188III	TCNNGA	4 cut(s)	37, 165, 427, 501
Hpy8I	GTNNAC	3 cut(s)	327, 491, 500
Hpy99I	CGWCG	1 cut(s)	301
HpyCH4III	ACNGT	1 cut(s)	297
HpyCH4V	TGCA	7 cut(s)	4, 83, 362, 376, 422, 439, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	482
HpyF3I	CTNAG	1 cut(s)	267
Hsp92II	CATG	4 cut(s)	22, 224, 234, 383
Kzo9I	GATC	1 cut(s)	24
LmnI	GCTCC	1 cut(s)	463
LpnPI	CCDG	8 cut(s)	202, 263, 290, 375, 456, 458, 471, 495
Lsp1109I	GCAGC	1 cut(s)	226
LweI	GCATC	3 cut(s)	349, 371, 385
MaeI	CTAG	1 cut(s)	272
MaeIII	GTNAC	1 cut(s)	207
MalI	GATC	1 cut(s)	26
MboI	GATC	1 cut(s)	24
MboII	GAAGA	3 cut(s)	19, 144, 442
MlsI	TGGCCA	1 cut(s)	476
MluCI	AATT	4 cut(s)	31, 148, 168, 307
MluNI	TGGCCA	1 cut(s)	476
MnlI	CCTC	6 cut(s)	64, 150, 340, 349, 442, 488
Mox20I	TGGCCA	1 cut(s)	476
Mph1103I	ATGCAT	2 cut(s)	6, 364
MroXI	GAANNNNTTC	1 cut(s)	252
MscI	TGGCCA	1 cut(s)	476
MseI	TTAA	1 cut(s)	203
Msp20I	TGGCCA	1 cut(s)	476
MspR9I	CCNGG	1 cut(s)	278
Mva1269I	GAATGC	1 cut(s)	4
MvaI	CCWGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	1 cut(s)	482
NdeI	CATATG	2 cut(s)	180, 370
NdeII	GATC	1 cut(s)	24
NlaIII	CATG	4 cut(s)	22, 224, 234, 383
NmuCI	GTSAC	1 cut(s)	207
NsiI	ATGCAT	2 cut(s)	6, 364
NspV	TTCGAA	1 cut(s)	311
PceI	AGGCCT	1 cut(s)	339
PcsI	WCGNNNNNNNCGW	1 cut(s)	499
PctI	GAATGC	1 cut(s)	4
PdmI	GAANNNNTTC	1 cut(s)	252
PkrI	GCNGC	2 cut(s)	175, 241
PsiI	TTATAA	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PsrI	GAACNNNNNNTAC	1 cut(s)	481
PstI	CTGCAG	1 cut(s)	487
SaqAI	TTAA	1 cut(s)	203
SatI	GCNGC	2 cut(s)	174, 240
Sau3AI	GATC	1 cut(s)	24
SbfI	CCTGCAGG	1 cut(s)	487
ScrFI	CCNGG	1 cut(s)	278
SdaI	CCTGCAGG	1 cut(s)	487
SetI	ASST	9 cut(s)	209, 228, 241, 273, 332, 468, 484, 490, 499
SfaNI	GCATC	3 cut(s)	349, 371, 385
SfcI	CTRYAG	1 cut(s)	483
SfuI	TTCGAA	1 cut(s)	311
Sse8387I	CCTGCAGG	1 cut(s)	487
Sse9I	AATT	4 cut(s)	31, 148, 168, 307
SseBI	AGGCCT	1 cut(s)	339
SsiI	CCGC	1 cut(s)	174
SspMI	CTAG	1 cut(s)	272
StuI	AGGCCT	1 cut(s)	339
StyD4I	CCNGG	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	297
TaqI	TCGA	2 cut(s)	299, 311
TasI	AATT	4 cut(s)	31, 148, 168, 307
TauI	GCSGC	1 cut(s)	176
Tru1I	TTAA	1 cut(s)	203
Tru9I	TTAA	1 cut(s)	203
TseFI	GTSAC	1 cut(s)	207
TseI	GCWGC	1 cut(s)	239
Tsp45I	GTSAC	1 cut(s)	207
TspDTI	ATGAA	2 cut(s)	161, 219
TspGWI	ACGGA	1 cut(s)	85
XapI	RAATTY	1 cut(s)	148
XmiI	GTMKAC	1 cut(s)	326
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	1 cut(s)	272
Zsp2I	ATGCAT	2 cut(s)	6, 364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.