Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00801

Orthogroup ID

OG0005681

Physical Location & Seq

Genomic Coordinates Forward (+)

32213 .. 34904

Gene Structure 2692 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G018110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGGATAAAAAGAGGCATATTGCGATTTTTACCACTGCAAGCCTTCCATGGATGACCGGAACTGCTGTCAACCCTTTGTTCCGTGCAGCGTATCTTGCAAAAGATGGGGAGAGGATTGTTAGTTTGGTCATTCCTTGGTTATCTTTGAAAGATCAAAAACTGGTGTATCCCAACAACATCACATTTAGCTCACCGGCAGAGCAAGAGGCTTATATCCGTCACTGGCTTCATGAGAGGACTGGATTTCAATCTGATTTCAGTATACTTTTTTATCCTGGAAAGTTTTCCTTAGACAAAAGGAGCATTCTTGCTGTCGGAGATATTTCTGAGATAATTCCTGATGAAAATGCAGATATTGCTATCCTTGAGGAGCCTGAGCACCTCACGTGGTATCATCATGGGAAGAGATGGAAAATTAAATTCCGGCTGGTTATAGGAATTATCCACACCAATTATTTGGAATATGTGAGGAGGGAGAAGAATGGAAGAATGCAAGCATTTCTTCTAAAATATGTTAATAATTGGGTTGTCAGTATATACTGTCACAAGGTAATCAGGTTATCTGCTGCCACCCAGGAGTATCCTCAATCGATCATTTGCAATGTTCATGGTGTCAACCCCAAGTTTCTGGAAATAGGCAAGAAAAAGCTAGAGCAGCAACAAAATGGAAGCCAAGCCTTCAGCAAAGGTGCCTACTACATTGGGAAAATGGTGTGGAGTAAAGGCTACAAGGAGCTGCTCAAACTTCTTCAAGACCATCAAAAGGAATTAACTGGACTTGAGGTTGATTTATATGGAACTGGGGAAGACTCTGATCAAGTTCGGGAAGCTGCTGAAAAATTGGAACTGGCTGTTAGAGTCCATCCTGGGCGTGATCATGCTGATCTTGAATTTCATGATTATAAAGTGTTCCTGAATCCAAGCACCACAGATGTGGTTTGCACGACCACAGCAGAAGCATTGGCAATGGGTAAAATTGTTGTGTGCGCCAATCACCCCTCGAATGACTTCTTCAAGCAGTTCCCAAATTGCCGAACATATGACAATGGAGATGGGTTTGTCAAGCTCACACAGCAAGCACTGGCTGAACAGCCTGCCCAGCTTACTGAGGCACAAAGGTATGAGCTTTCATGGGCGGCTGCCACCGAACGGTTTTTAAGGTGTGCTGAGCTAGAAAAGGCATCGACAGCAAAACTGTCAGAATCTCCCTCAAAAAACTTTATGTCTACGTCATTGAACTTGGGGGGTAAGATGGAAACTGCATCTGCATATGTGCATCATGTGGCATCTGGTTTTGAAGCAACGCGGAGGATTTTTGGTGCGATCCCAAGGAGTTTGCAACCAGATGAAGAGCAATGCAAGGAGCTTGGGCTGGCTGTTCCTGCTGGCAAGCAAGGCTTCGGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006643 GO:0006664 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008610 GO:0009058 GO:0009247 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0009987 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019375 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0035250 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1901137 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_trans_1_4 Glycos_transf_1

Protein Analysis

469

Amino Acids

53.1

Weight (kDa)

8.03

Isoelectric Point (pI)

37.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glycos_transf_1	PF00534	219 - 334	6e-11	Glycosyl transferases group 1
Glyco_trans_1_4	PF13692	232 - 334	4.6e-09	Glycosyl transferases group 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00550 AT4G00550
fragaria_vesca	FvH4_7g13530
malus_domestica	MD01G1048600.v1.1 MD07G1125900.v1.1
prunus_persica	Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1 Prupe.2G159400_v2.0.a1
pyrus_communis	pycom01g07380 pycom07g12000
rosa_chinensis	RchiOBHm_Chr1g0353091
rosa_laevigata	RLG00000028291
rosa_multiflora	Rmu_co8051134.1_g000001 Rmu_sc0001207.1_g000084 Rmu_sc0008840.1_g000014
rosa_roxburghii	Rroxscaffold_4G00302070
rosa_rugosa	Rorug01G0233600 Rorug01G0233600
rosa_samantha	Rh1AG247200 Rh1BG217100 Rh1CG230800 Rh1DG243200
rosa_wichuraiana	Rw0G018110 Rw1G021370 Rw1G021500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	903
AccB1I	GGYRCC	1 cut(s)	689
AccI	GTMKAC	2 cut(s)	262, 1226
AccII	CGCG	1 cut(s)	1306
AciI	CCGC	2 cut(s)	1136, 1306
AclWI	GGATC	1 cut(s)	1318
AcsI	RAATTY	2 cut(s)	419, 890
AcuI	CTGAAG	1 cut(s)	664
AcvI	CACGTG	1 cut(s)	387
AfiI	CCNNNNNNNGG	2 cut(s)	763, 1149
AgsI	TTSAA	7 cut(s)	148, 248, 752, 890, 1015, 1237, 1298
AjnI	CCWGG	3 cut(s)	274, 573, 865
AleI	CACNNNNGTG	1 cut(s)	932
AluBI	AGCT	9 cut(s)	189, 649, 736, 830, 1066, 1102, 1126, 1171, 1366
AluI	AGCT	9 cut(s)	189, 649, 736, 830, 1066, 1102, 1126, 1171, 1366
Alw21I	GWGCWC	1 cut(s)	381
AlwI	GGATC	1 cut(s)	1318
ApeKI	GCWGC	6 cut(s)	86, 566, 655, 736, 830, 1139
ApoI	RAATTY	2 cut(s)	419, 890
Asp700I	GAANNNNTTC	2 cut(s)	283, 1007
AspLEI	GCGC	1 cut(s)	989
AsuHPI	GGTGA	2 cut(s)	183, 986
BaeI	ACNNNNGTAYC	2 cut(s)	149, 182
BanI	GGYRCC	1 cut(s)	689
BbrPI	CACGTG	1 cut(s)	387
BbsI	GAAGAC	1 cut(s)	813
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	6 cut(s)	98, 553, 667, 723, 817, 1126
BccI	CCATC	6 cut(s)	98, 402, 765, 870, 1046, 1246
BciT130I	CCWGG	3 cut(s)	276, 575, 867
BciVI	GTATCC	2 cut(s)	177, 591
BclI	TGATCA	2 cut(s)	814, 874
BfaI	CTAG	2 cut(s)	650, 1172
BfuI	GTATCC	2 cut(s)	177, 591
BisI	GCNGC	7 cut(s)	87, 567, 656, 737, 831, 1137, 1140
BlpI	GCTNAGC	1 cut(s)	1167
BlsI	GCNGC	7 cut(s)	88, 568, 657, 738, 832, 1138, 1141
Bme1390I	CCNGG	3 cut(s)	276, 575, 867
BmiI	GGNNCC	2 cut(s)	372, 691
BmrFI	CCNGG	3 cut(s)	276, 575, 867
BmrI	ACTGGG	1 cut(s)	810
BmsI	GCATC	4 cut(s)	1190, 1271, 1285, 1295
BmuI	ACTGGG	1 cut(s)	810
BpiI	GAAGAC	1 cut(s)	813
Bpu10I	CCTNAGC	1 cut(s)	375
Bpu1102I	GCTNAGC	1 cut(s)	1167
BpuEI	CTTGAG	2 cut(s)	386, 800
Bsa29I	ATCGAT	1 cut(s)	590
BsaAI	YACGTR	1 cut(s)	387
BsaBI	GATNNNNATC	1 cut(s)	247
BsaJI	CCNNGG	5 cut(s)	47, 134, 573, 866, 1328
BsaWI	WCCGGW	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	2 cut(s)	763, 1149
Bse118I	RCCGGY	1 cut(s)	193
Bse1I	ACTGG	7 cut(s)	165, 227, 244, 778, 805, 852, 1086
Bse3DI	GCAATG	3 cut(s)	607, 972, 1361
Bse8I	GATNNNNATC	1 cut(s)	247
BseBI	CCWGG	3 cut(s)	276, 575, 867
BseCI	ATCGAT	1 cut(s)	590
BseDI	CCNNGG	5 cut(s)	47, 134, 573, 866, 1328
BseGI	GGATG	2 cut(s)	57, 862
BseJI	GATNNNNATC	1 cut(s)	247
BseLI	CCNNNNNNNGG	2 cut(s)	763, 1149
BseMI	GCAATG	3 cut(s)	607, 972, 1361
BseMII	CTCAG	4 cut(s)	318, 366, 1098, 1158
BseNI	ACTGG	7 cut(s)	165, 227, 244, 778, 805, 852, 1086
BseRI	GAGGAG	2 cut(s)	383, 484
BseXI	GCAGC	6 cut(s)	98, 553, 667, 723, 817, 1126
BseYI	CCCAGC	1 cut(s)	1098
BsgI	GTGCAG	1 cut(s)	105
Bsh1236I	CGCG	1 cut(s)	1306
BshNI	GGYRCC	1 cut(s)	689
BshVI	ATCGAT	1 cut(s)	590
BsiHKAI	GWGCWC	1 cut(s)	381
BsiSI	CCGG	3 cut(s)	57, 194, 424
BslI	CCNNNNNNNGG	2 cut(s)	763, 1149
BsmI	GAATGC	2 cut(s)	303, 495
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp143I	GATC	6 cut(s)	151, 591, 814, 874, 883, 1323
Bsp1720I	GCTNAGC	1 cut(s)	1167
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	2 cut(s)	1136, 1306
BspCNI	CTCAG	4 cut(s)	319, 367, 1099, 1159
BspDI	ATCGAT	1 cut(s)	590
BspFNI	CGCG	1 cut(s)	1306
BspHI	TCATGA	2 cut(s)	229, 895
BspLI	GGNNCC	2 cut(s)	372, 691
BspPI	GGATC	1 cut(s)	1318
BspQI	GCTCTTC	1 cut(s)	1344
BspT107I	GGYRCC	1 cut(s)	689
BsrDI	GCAATG	3 cut(s)	607, 972, 1361
BsrFI	RCCGGY	1 cut(s)	193
BsrI	ACTGG	7 cut(s)	165, 227, 244, 778, 805, 852, 1086
BssAI	RCCGGY	1 cut(s)	193
BssECI	CCNNGG	5 cut(s)	47, 134, 573, 866, 1328
BssMI	GATC	6 cut(s)	151, 591, 814, 874, 883, 1323
BssNAI	GTATAC	1 cut(s)	263
BssT1I	CCWWGG	3 cut(s)	47, 134, 1328
Bst1107I	GTATAC	1 cut(s)	263
Bst2UI	CCWGG	3 cut(s)	276, 575, 867
Bst4CI	ACNGT	3 cut(s)	542, 1152, 1197
Bst6I	CTCTTC	2 cut(s)	398, 1344
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstBAI	YACGTR	1 cut(s)	387
BstC8I	GCNNGC	7 cut(s)	40, 495, 1077, 1095, 1374, 1387, 1391
BstDEI	CTNAG	5 cut(s)	289, 327, 375, 1107, 1167
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	2 cut(s)	57, 862
BstFNI	CGCG	1 cut(s)	1306
BstHHI	GCGC	1 cut(s)	989
BstKTI	GATC	6 cut(s)	154, 594, 817, 877, 886, 1326
BstMBI	GATC	6 cut(s)	151, 591, 814, 874, 883, 1323
BstMWI	GCNNNNNNNGC	8 cut(s)	95, 356, 655, 1072, 1099, 1187, 1382, 1395
BstNI	CCWGG	3 cut(s)	276, 575, 867
BstSCI	CCNGG	3 cut(s)	274, 573, 865
BstUI	CGCG	1 cut(s)	1306
BstV1I	GCAGC	6 cut(s)	98, 553, 667, 723, 817, 1126
BstV2I	GAAGAC	1 cut(s)	813
BstXI	CCANNNNNNTGG	3 cut(s)	457, 628, 934
BstZ17I	GTATAC	1 cut(s)	263
Bsu15I	ATCGAT	1 cut(s)	590
BsuI	GTATCC	2 cut(s)	177, 591
BsuTUI	ATCGAT	1 cut(s)	590
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	57, 862
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	3 cut(s)	33, 220, 1079
Cac8I	GCNNGC	7 cut(s)	40, 495, 1077, 1095, 1374, 1387, 1391
CciI	TCATGA	2 cut(s)	229, 895
CfoI	GCGC	1 cut(s)	989
Cfr10I	RCCGGY	1 cut(s)	193
ClaI	ATCGAT	1 cut(s)	590
CviAII	CATG	8 cut(s)	48, 230, 398, 608, 878, 896, 1131, 1280
DdeI	CTNAG	5 cut(s)	289, 327, 375, 1107, 1167
DpnI	GATC	6 cut(s)	153, 593, 816, 876, 885, 1325
DpnII	GATC	6 cut(s)	151, 591, 814, 874, 883, 1323
Eam1104I	CTCTTC	2 cut(s)	398, 1344
EarI	CTCTTC	2 cut(s)	398, 1344
Eco130I	CCWWGG	3 cut(s)	47, 134, 1328
Eco57I	CTGAAG	1 cut(s)	664
Eco72I	CACGTG	1 cut(s)	387
EcoRII	CCWGG	3 cut(s)	274, 573, 865
EcoT14I	CCWWGG	3 cut(s)	47, 134, 1328
ErhI	CCWWGG	3 cut(s)	47, 134, 1328
FaeI	CATG	8 cut(s)	51, 233, 401, 611, 881, 899, 1134, 1283
FalI	AAGNNNNNCTT	5 cut(s)	272, 304, 486, 518, 1382
FatI	CATG	8 cut(s)	47, 229, 397, 607, 877, 895, 1130, 1279
FauNDI	CATATG	2 cut(s)	1039, 1270
FbaI	TGATCA	2 cut(s)	814, 874
FblI	GTMKAC	2 cut(s)	262, 1226
Fnu4HI	GCNGC	7 cut(s)	87, 567, 656, 737, 831, 1137, 1140
FokI	GGATG	2 cut(s)	64, 849
Fsp4HI	GCNGC	7 cut(s)	87, 567, 656, 737, 831, 1137, 1140
FspBI	CTAG	2 cut(s)	650, 1172
GlaI	GCGC	1 cut(s)	988
GluI	GCNGC	7 cut(s)	87, 567, 656, 737, 831, 1137, 1140
GsaI	CCCAGC	1 cut(s)	1102
HapII	CCGG	3 cut(s)	57, 194, 424
HhaI	GCGC	1 cut(s)	989
Hin1II	CATG	8 cut(s)	51, 233, 401, 611, 881, 899, 1134, 1283
Hin6I	GCGC	1 cut(s)	987
HinP1I	GCGC	1 cut(s)	987
HincII	GTYRAC	2 cut(s)	70, 616
HindII	GTYRAC	2 cut(s)	70, 616
HinfI	GANTC	4 cut(s)	809, 858, 916, 1202
HpaII	CCGG	3 cut(s)	57, 194, 424
HphI	GGTGA	2 cut(s)	183, 986
Hpy166II	GTNNAC	4 cut(s)	70, 263, 616, 1227
Hpy188I	TCNGA	6 cut(s)	253, 317, 328, 814, 1201, 1403
Hpy188III	TCNNGA	8 cut(s)	230, 338, 629, 752, 824, 887, 896, 913
Hpy8I	GTNNAC	4 cut(s)	70, 263, 616, 1227
HpyAV	CCTTC	2 cut(s)	53, 688
HpyCH4III	ACNGT	3 cut(s)	542, 1152, 1197
HpyCH4IV	ACGT	2 cut(s)	386, 1229
HpyF10VI	GCNNNNNNNGC	8 cut(s)	95, 356, 655, 1072, 1099, 1187, 1382, 1395
HpyF3I	CTNAG	5 cut(s)	289, 327, 375, 1107, 1167
HpySE526I	ACGT	2 cut(s)	386, 1229
Hsp92II	CATG	8 cut(s)	51, 233, 401, 611, 881, 899, 1134, 1283
HspAI	GCGC	1 cut(s)	987
Ksp22I	TGATCA	2 cut(s)	814, 874
Kzo9I	GATC	6 cut(s)	151, 591, 814, 874, 883, 1323
LguI	GCTCTTC	1 cut(s)	1344
LmnI	GCTCC	4 cut(s)	300, 370, 733, 1363
Lsp1109I	GCAGC	6 cut(s)	98, 553, 667, 723, 817, 1126
LweI	GCATC	4 cut(s)	1190, 1271, 1285, 1295
MaeI	CTAG	2 cut(s)	650, 1172
MaeII	ACGT	2 cut(s)	386, 1229
MaeIII	GTNAC	2 cut(s)	218, 542
MalI	GATC	6 cut(s)	153, 593, 816, 876, 885, 1325
MboI	GATC	6 cut(s)	151, 591, 814, 874, 883, 1323
MboII	GAAGA	8 cut(s)	415, 490, 494, 498, 740, 818, 1003, 1361
MhlI	GDGCHC	1 cut(s)	381
MlyI	GAGTC	2 cut(s)	803, 867
MmeI	TCCRAC	1 cut(s)	295
MroXI	GAANNNNTTC	2 cut(s)	283, 1007
MseI	TTAA	4 cut(s)	417, 516, 770, 1157
MslI	CAYNNNNRTG	1 cut(s)	932
MspI	CCGG	3 cut(s)	57, 194, 424
MspR9I	CCNGG	3 cut(s)	276, 575, 867
Mva1269I	GAATGC	2 cut(s)	303, 495
MvaI	CCWGG	3 cut(s)	276, 575, 867
MvnI	CGCG	1 cut(s)	1306
MwoI	GCNNNNNNNGC	8 cut(s)	95, 356, 655, 1072, 1099, 1187, 1382, 1395
NcoI	CCATGG	1 cut(s)	47
NdeI	CATATG	2 cut(s)	1039, 1270
NdeII	GATC	6 cut(s)	151, 591, 814, 874, 883, 1323
NlaIII	CATG	8 cut(s)	51, 233, 401, 611, 881, 899, 1134, 1283
NlaIV	GGNNCC	2 cut(s)	372, 691
NmuCI	GTSAC	2 cut(s)	218, 542
OliI	CACNNNNGTG	1 cut(s)	932
PagI	TCATGA	2 cut(s)	229, 895
PciSI	GCTCTTC	1 cut(s)	1344
PctI	GAATGC	2 cut(s)	303, 495
PdmI	GAANNNNTTC	2 cut(s)	283, 1007
PfeI	GAWTC	2 cut(s)	916, 1202
PfoI	TCCNGGA	1 cut(s)	274
PkrI	GCNGC	7 cut(s)	88, 568, 657, 738, 832, 1138, 1141
PleI	GAGTC	2 cut(s)	803, 866
PmaCI	CACGTG	1 cut(s)	387
PmlI	CACGTG	1 cut(s)	387
PpsI	GAGTC	2 cut(s)	803, 866
Ppu21I	YACGTR	1 cut(s)	387
PsiI	TTATAA	1 cut(s)	903
Psp6I	CCWGG	3 cut(s)	274, 573, 865
PspCI	CACGTG	1 cut(s)	387
PspFI	CCCAGC	1 cut(s)	1098
PspGI	CCWGG	3 cut(s)	274, 573, 865
PspN4I	GGNNCC	2 cut(s)	372, 691
RseI	CAYNNNNRTG	1 cut(s)	932
SapI	GCTCTTC	1 cut(s)	1344
SaqAI	TTAA	4 cut(s)	417, 516, 770, 1157
SatI	GCNGC	7 cut(s)	87, 567, 656, 737, 831, 1137, 1140
Sau3AI	GATC	6 cut(s)	151, 591, 814, 874, 883, 1323
SchI	GAGTC	2 cut(s)	803, 867
ScrFI	CCNGG	3 cut(s)	276, 575, 867
SduI	GDGCHC	1 cut(s)	381
SfaNI	GCATC	4 cut(s)	1190, 1271, 1285, 1295
SmiMI	CAYNNNNRTG	1 cut(s)	932
SmlI	CTYRAG	2 cut(s)	365, 779
SmoI	CTYRAG	2 cut(s)	365, 779
SsiI	CCGC	2 cut(s)	1136, 1306
SspMI	CTAG	2 cut(s)	650, 1172
StyD4I	CCNGG	3 cut(s)	274, 573, 865
StyI	CCWWGG	3 cut(s)	47, 134, 1328
TaaI	ACNGT	3 cut(s)	542, 1152, 1197
TaiI	ACGT	2 cut(s)	389, 1232
TaqI	TCGA	3 cut(s)	590, 1001, 1184
TauI	GCSGC	1 cut(s)	1139
TfiI	GAWTC	2 cut(s)	916, 1202
Tru1I	TTAA	4 cut(s)	417, 516, 770, 1157
Tru9I	TTAA	4 cut(s)	417, 516, 770, 1157
TscAI	CASTG	3 cut(s)	40, 227, 1086
TseFI	GTSAC	2 cut(s)	218, 542
TseI	GCWGC	6 cut(s)	86, 566, 655, 736, 830, 1139
Tsp45I	GTSAC	2 cut(s)	218, 542
TspDTI	ATGAA	6 cut(s)	218, 357, 596, 884, 1119, 1362
TspGWI	ACGGA	2 cut(s)	71, 206
TspRI	CASTG	3 cut(s)	40, 227, 1086
XapI	RAATTY	2 cut(s)	419, 890
XmiI	GTMKAC	2 cut(s)	262, 1226
XmnI	GAANNNNTTC	2 cut(s)	283, 1007
XspI	CTAG	2 cut(s)	650, 1172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.