AT4G01730

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011254
Physical Location & Seq
Forward (+)
749307 .. 752034
2728 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G01730.1

Sequence Viewer

Length: 1527 bp
ATGACGAGAAGACGCCATGGCTGGCAACGACCATTACACCCTTTACAGATTGTGGGAGCTGTTATATATAGTGTTCTGGTGGCAGCCTTTTATGTATTCCTCGGGTTTTTCTTGGGGAATCGAATAGCTGTTATCGCGCTTCTTTCGGTTTTCTCCTCTGTGGCGGTTTCGGTTATAGTTTTATTCGTTAGGTGTACTGCGATTGATCCCACGGATAAGACTAGTGCTAAGAAAAAGAGAAAGGATAAATCCAAAGGGGTCTTGATGAAGCTGAGAGTCAAGGTTGTTCTGAGTCAAGTTGTTGTGAGGTTTTTCAGGAGATTAGAGAGGAAAATCTTAAGGAATTTTCTTAGAAGAACTTATCTGGATCCATGGAAAAGCAGTGTGCAGCTAGAACCACTTCTTCCATTTCCACTTGTTATGAAAGATGATGATTCTGTTACACCTGATCCTAAAGAGGAAGATGATATCTCTTATTGTTCACTTTGTGATTTAGAGGTTAAACGCAGCAGTAAGCATTGCAGGACATGTAACCGGTGTGTCGAAGGGTTTGATCACCATTGTAGGTGGCTTAATAACTGCGTTGGGAAAAAGAATTACACGACGTTTATACTCCTGATGGTTTTCGTCTTGCTTATGCTAATAATAGAAGGTGGAACAGCTCTTGCCGTATTTGTCAGATGTTTTGTGGACAAGAAAGGAATGGAAATGGAATTGAAGAGAAGGCTTTATGTAGAGTTCCCTCAATGGGCTCTTGCTACAATATCTATTATCTTGGTCTTGTTCACGGCTTATGGCTCAGCCGCCATGGGGCAGCTTTTCCTCTTCCATGTAGTTCTCATAAGAAAGGGGATGAGAACATATGACTACATATTAGCGATGAAGGAGGAGAATCAATTTACAGAAGTGGACCCTTTTGATGAATTAGATTCGTCTTCAGATGAAAGCTCAGATTTTGATTCGCCTGAAAGATTAAGACCAACGTTTATCTCCAAGTTTATGTGCAGGAAAGCAAATGAGAATCAGCAGAGACTATCCATAAAAATAGAAGGAGATGAACAGTCACCTTCTTCCACGCTGATCAACAAGAAACCGGGGTTTCATGTAAGCATAAACCCATGGAAACTGATAACATTAAGCAGTGAAAAGGCTCTACAAGCAGCTGAGAAAGCAAAGGAAAGACTGAGGAAGACGAAACCAGTTTCCGGGACTGAAGAAAATTCACTTAAGCCACTTCCATTAGAGACCAAATTCGGACTTTTGTTAGATCCTGACAATAACAACACTGTGTTGCAACCATCAACAACTGCAGCAGTAAAGCTTCAGGTTTCACCTGGAAGATTCTCAAGCCCACGAAGAAGGTTCTCAGGCTCTTCATCTTCAACTGTGCCTTCGCCGAAGCAAAAATACAGAACTAACTTTGACTTGAAGCTAACTGAAGTCTCTAGGGAGCTGGAAAGTTACATCTCAAGACAGGTTTTATGTTCTGTGATAAAACAAGATGGAAGTGAAGCATCACCAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

508

Amino Acids

57.9

Weight (kDa)

9.58

Isoelectric Point (pI)

51.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 155 - 291 9.7e-33 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011254)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01730
fragaria_vesca FvH4_1g26210 FvH4_1g26210
malus_domestica MD09G1290600.v1.1 MD17G1285300.v1.1
prunus_persica Prupe.3G002400_v2.0.a1 Prupe.3G002400_v2.0.a1
pyrus_communis pycom09g19820 pycom17g28110
rosa_chinensis RchiOBHm_Chr3g0485751
rosa_laevigata RLG00000023128
rosa_multiflora Rmu_sc0003005.1_g000002
rosa_roxburghii Rroxscaffold_6G00396350 Rroxscaffold_6G00396370
rosa_rugosa Rorug03G0221100
rosa_samantha Rh3AG270400 Rh3BG305900 Rh3CG304300 Rh3DG300400
rosa_wichuraiana Rw3G024080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 137
AciI CCGC 2 cut(s) 164, 804
AclI AACGTT 1 cut(s) 983
AclWI GGATC 5 cut(s) 200, 362, 375, 443, 1262
AcsI RAATTY 3 cut(s) 343, 1219, 1250
AcuI CTGAAG 4 cut(s) 921, 1233, 1307, 1458
AcyI GRCGYC 1 cut(s) 13
AdeI CACNNNGTG 1 cut(s) 488
AfaI GTAC 1 cut(s) 196
AfiI CCNNNNNNNGG 3 cut(s) 748, 810, 1205
AflII CTTAAG 2 cut(s) 337, 1226
AflIII ACRYGT 1 cut(s) 527
AgeI ACCGGT 1 cut(s) 534
AgsI TTSAA 3 cut(s) 718, 1383, 1429
AhlI ACTAGT 1 cut(s) 221
AjnI CCWGG 1 cut(s) 1333
Alw26I GTCTC 3 cut(s) 1024, 1238, 1447
AlwI GGATC 5 cut(s) 200, 362, 375, 443, 1262
Ama87I CYCGRG 1 cut(s) 101
ApeKI GCWGC 6 cut(s) 83, 388, 507, 814, 1160, 1310
ApoI RAATTY 3 cut(s) 343, 1219, 1250
AsiGI ACCGGT 1 cut(s) 534
Asp700I GAANNNNTTC 1 cut(s) 399
AspLEI GCGC 1 cut(s) 139
AspS9I GGNCC 1 cut(s) 910
AsuC2I CCSGG 2 cut(s) 1095, 1207
AsuHPI GGTGA 4 cut(s) 548, 1056, 1323, 1509
AvaI CYCGRG 1 cut(s) 101
AvaII GGWCC 1 cut(s) 910
BamHI GGATCC 1 cut(s) 367
BanII GRGCYC 1 cut(s) 754
BarI GAAGNNNNNNTAC 2 cut(s) 1391, 1423
BbsI GAAGAC 3 cut(s) 16, 927, 1196
BbvI GCAGC 6 cut(s) 95, 400, 519, 826, 1172, 1322
BccI CCATC 3 cut(s) 613, 1306, 1496
BceAI ACGGC 2 cut(s) 653, 804
BciT130I CCWGG 1 cut(s) 1335
BclI TGATCA 2 cut(s) 553, 1080
BcnI CCSGG 2 cut(s) 1095, 1207
BcoDI GTCTC 3 cut(s) 1024, 1238, 1447
BcuI ACTAGT 1 cut(s) 221
BfaI CTAG 3 cut(s) 222, 392, 1446
BfmI CTRYAG 1 cut(s) 1308
BfrI CTTAAG 2 cut(s) 337, 1226
BisI GCNGC 7 cut(s) 84, 389, 508, 804, 815, 1161, 1311
BlpI GCTNAGC 1 cut(s) 799
BlsI GCNGC 7 cut(s) 85, 390, 509, 805, 816, 1162, 1312
Bme1390I CCNGG 3 cut(s) 1095, 1207, 1335
Bme18I GGWCC 1 cut(s) 910
BmeT110I CYCGRG 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 910
BmiI GGNNCC 2 cut(s) 369, 912
BmrFI CCNGG 3 cut(s) 1095, 1207, 1335
BmsI GCATC 1 cut(s) 1523
BpiI GAAGAC 3 cut(s) 16, 927, 1196
Bpu1102I GCTNAGC 1 cut(s) 799
BpuEI CTTGAG 2 cut(s) 1330, 1453
BpuMI CCSGG 2 cut(s) 1095, 1207
BsaHI GRCGYC 1 cut(s) 13
BsaI GGTCTC 1 cut(s) 1238
BsaJI CCNNGG 7 cut(s) 16, 100, 210, 371, 807, 1094, 1118
BsaWI WCCGGW 1 cut(s) 534
Bsc4I CCNNNNNNNGG 3 cut(s) 748, 810, 1205
Bse118I RCCGGY 1 cut(s) 534
Bse1I ACTGG 1 cut(s) 1199
Bse3DI GCAATG 1 cut(s) 517
BseBI CCWGG 1 cut(s) 1335
BseDI CCNNGG 7 cut(s) 16, 100, 210, 371, 807, 1094, 1118
BseGI GGATG 1 cut(s) 858
BseLI CCNNNNNNNGG 3 cut(s) 748, 810, 1205
BseMI GCAATG 1 cut(s) 517
BseMII CTCAG 7 cut(s) 263, 281, 813, 963, 1155, 1175, 1380
BseNI ACTGG 1 cut(s) 1199
BseRI GAGGAG 2 cut(s) 145, 902
BseXI GCAGC 6 cut(s) 95, 400, 519, 826, 1172, 1322
BsgI GTGCAG 2 cut(s) 407, 1024
Bsh1236I CGCG 1 cut(s) 137
BshTI ACCGGT 1 cut(s) 534
BsiHKCI CYCGRG 1 cut(s) 101
BsiSI CCGG 3 cut(s) 535, 1094, 1206
BslFI GGGAC 1 cut(s) 1222
BslI CCNNNNNNNGG 3 cut(s) 748, 810, 1205
BsmAI GTCTC 3 cut(s) 1024, 1238, 1447
BsmFI GGGAC 1 cut(s) 1222
Bso31I GGTCTC 1 cut(s) 1238
BsoBI CYCGRG 1 cut(s) 101
Bsp1286I GDGCHC 1 cut(s) 754
Bsp143I GATC 6 cut(s) 205, 367, 448, 553, 1080, 1267
Bsp1720I GCTNAGC 1 cut(s) 799
Bsp19I CCATGG 4 cut(s) 16, 371, 807, 1118
BspACI CCGC 2 cut(s) 164, 804
BspCNI CTCAG 7 cut(s) 264, 282, 812, 962, 1156, 1176, 1379
BspFNI CGCG 1 cut(s) 137
BspLI GGNNCC 2 cut(s) 369, 912
BspMAI CTGCAG 1 cut(s) 1312
BspPI GGATC 5 cut(s) 200, 362, 375, 443, 1262
BspQI GCTCTTC 1 cut(s) 1378
BspTI CTTAAG 2 cut(s) 337, 1226
BspTNI GGTCTC 1 cut(s) 1238
BsrDI GCAATG 1 cut(s) 517
BsrFI RCCGGY 1 cut(s) 534
BsrI ACTGG 1 cut(s) 1199
BssAI RCCGGY 1 cut(s) 534
BssECI CCNNGG 7 cut(s) 16, 100, 210, 371, 807, 1094, 1118
BssMI GATC 6 cut(s) 205, 367, 448, 553, 1080, 1267
BssNI GRCGYC 1 cut(s) 13
BssT1I CCWWGG 4 cut(s) 16, 371, 807, 1118
Bst2UI CCWGG 1 cut(s) 1335
Bst4CI ACNGT 3 cut(s) 1062, 1288, 1387
Bst6I CTCTTC 3 cut(s) 713, 830, 1378
BstACI GRCGYC 1 cut(s) 13
BstAFI CTTAAG 2 cut(s) 337, 1226
BstC8I GCNNGC 1 cut(s) 23
BstDEI CTNAG 9 cut(s) 228, 272, 290, 350, 799, 949, 1164, 1184, 1366
BstDSI CCRYGG 5 cut(s) 16, 210, 371, 807, 1118
BstF5I GGATG 1 cut(s) 858
BstFNI CGCG 1 cut(s) 137
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 6 cut(s) 208, 370, 451, 556, 1083, 1270
BstMAI GTCTC 3 cut(s) 1024, 1238, 1447
BstMBI GATC 6 cut(s) 205, 367, 448, 553, 1080, 1267
BstMWI GCNNNNNNNGC 3 cut(s) 134, 1157, 1169
BstNI CCWGG 1 cut(s) 1335
BstNSI RCATGY 1 cut(s) 531
BstSCI CCNGG 3 cut(s) 1093, 1205, 1333
BstSFI CTRYAG 1 cut(s) 1308
BstUI CGCG 1 cut(s) 137
BstV1I GCAGC 6 cut(s) 95, 400, 519, 826, 1172, 1322
BstV2I GAAGAC 3 cut(s) 16, 927, 1196
BstX2I RGATCY 2 cut(s) 367, 1267
BstYI RGATCY 2 cut(s) 367, 1267
BtgI CCRYGG 5 cut(s) 16, 210, 371, 807, 1118
BtgZI GCGATG 1 cut(s) 893
BtsCI GGATG 1 cut(s) 858
BtsI GCAGTG 2 cut(s) 388, 1147
BtsIMutI CAGTG 3 cut(s) 388, 1147, 1284
Cac8I GCNNGC 1 cut(s) 23
CfoI GCGC 1 cut(s) 139
Cfr10I RCCGGY 1 cut(s) 534
Cfr13I GGNCC 1 cut(s) 910
CseI GACGC 1 cut(s) 21
Csp6I GTAC 1 cut(s) 195
CspAI ACCGGT 1 cut(s) 534
CviAII CATG 7 cut(s) 17, 372, 528, 808, 830, 1103, 1119
CviQI GTAC 1 cut(s) 195
DdeI CTNAG 9 cut(s) 228, 272, 290, 350, 799, 949, 1164, 1184, 1366
DpnI GATC 6 cut(s) 207, 369, 450, 555, 1082, 1269
DpnII GATC 6 cut(s) 205, 367, 448, 553, 1080, 1267
DraIII CACNNNGTG 1 cut(s) 488
Eam1104I CTCTTC 3 cut(s) 713, 830, 1378
EarI CTCTTC 3 cut(s) 713, 830, 1378
Eco130I CCWWGG 4 cut(s) 16, 371, 807, 1118
Eco24I GRGCYC 1 cut(s) 754
Eco31I GGTCTC 1 cut(s) 1238
Eco32I GATATC 1 cut(s) 469
Eco47I GGWCC 1 cut(s) 910
Eco57I CTGAAG 4 cut(s) 921, 1233, 1307, 1458
Eco88I CYCGRG 1 cut(s) 101
EcoRII CCWGG 1 cut(s) 1333
EcoRV GATATC 1 cut(s) 469
EcoT14I CCWWGG 4 cut(s) 16, 371, 807, 1118
EcoT38I GRGCYC 1 cut(s) 754
ErhI CCWWGG 4 cut(s) 16, 371, 807, 1118
FaeI CATG 7 cut(s) 20, 375, 531, 811, 833, 1106, 1122
FaqI GGGAC 1 cut(s) 1222
FatI CATG 7 cut(s) 16, 371, 527, 807, 829, 1102, 1118
FauNDI CATATG 1 cut(s) 862
FbaI TGATCA 2 cut(s) 553, 1080
Fnu4HI GCNGC 7 cut(s) 84, 389, 508, 804, 815, 1161, 1311
FokI GGATG 1 cut(s) 865
FriOI GRGCYC 1 cut(s) 754
Fsp4HI GCNGC 7 cut(s) 84, 389, 508, 804, 815, 1161, 1311
FspBI CTAG 3 cut(s) 222, 392, 1446
GlaI GCGC 1 cut(s) 138
GluI GCNGC 7 cut(s) 84, 389, 508, 804, 815, 1161, 1311
HapII CCGG 3 cut(s) 535, 1094, 1206
HgaI GACGC 1 cut(s) 21
HhaI GCGC 1 cut(s) 139
Hin1I GRCGYC 1 cut(s) 13
Hin1II CATG 7 cut(s) 20, 375, 531, 811, 833, 1106, 1122
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HindIII AAGCTT 1 cut(s) 1319
HinfI GANTC 9 cut(s) 118, 276, 292, 434, 892, 929, 959, 1021, 1341
HpaII CCGG 3 cut(s) 535, 1094, 1206
HphI GGTGA 4 cut(s) 548, 1056, 1323, 1509
Hpy166II GTNNAC 5 cut(s) 195, 482, 691, 786, 910
Hpy188I TCNGA 5 cut(s) 291, 680, 940, 952, 1256
Hpy188III TCNNGA 6 cut(s) 262, 316, 365, 616, 1271, 1470
Hpy8I GTNNAC 5 cut(s) 195, 482, 691, 786, 910
Hpy99I CGWCG 1 cut(s) 607
HpyAV CCTTC 8 cut(s) 539, 644, 717, 877, 1043, 1077, 1353, 1401
HpyCH4III ACNGT 3 cut(s) 1062, 1288, 1387
HpyCH4IV ACGT 2 cut(s) 605, 983
HpyCH4V TGCA 5 cut(s) 388, 522, 1005, 1294, 1310
HpyF10VI GCNNNNNNNGC 3 cut(s) 134, 1157, 1169
HpyF3I CTNAG 9 cut(s) 228, 272, 290, 350, 799, 949, 1164, 1184, 1366
HpySE526I ACGT 2 cut(s) 605, 983
Hsp92I GRCGYC 1 cut(s) 13
Hsp92II CATG 7 cut(s) 20, 375, 531, 811, 833, 1106, 1122
HspAI GCGC 1 cut(s) 137
Ksp22I TGATCA 2 cut(s) 553, 1080
Kzo9I GATC 6 cut(s) 205, 367, 448, 553, 1080, 1267
LguI GCTCTTC 1 cut(s) 1378
LmnI GCTCC 2 cut(s) 56, 1450
Lsp1109I GCAGC 6 cut(s) 95, 400, 519, 826, 1172, 1322
LweI GCATC 1 cut(s) 1523
MaeI CTAG 3 cut(s) 222, 392, 1446
MaeII ACGT 2 cut(s) 605, 983
MaeIII GTNAC 4 cut(s) 439, 530, 1062, 1460
MalI GATC 6 cut(s) 207, 369, 450, 555, 1082, 1269
MboI GATC 6 cut(s) 205, 367, 448, 553, 1080, 1267
MflI RGATCY 2 cut(s) 367, 1267
MhlI GDGCHC 1 cut(s) 754
MluCI AATT 7 cut(s) 343, 595, 713, 896, 923, 1219, 1250
MlyI GAGTC 2 cut(s) 285, 301
MroXI GAANNNNTTC 1 cut(s) 399
MseI TTAA 6 cut(s) 338, 501, 573, 974, 1136, 1227
MspA1I CMGCKG 1 cut(s) 1163
MspCI CTTAAG 2 cut(s) 337, 1226
MspI CCGG 3 cut(s) 535, 1094, 1206
MspR9I CCNGG 3 cut(s) 1095, 1207, 1335
MvaI CCWGG 1 cut(s) 1335
MvnI CGCG 1 cut(s) 137
MwoI GCNNNNNNNGC 3 cut(s) 134, 1157, 1169
NciI CCSGG 2 cut(s) 1095, 1207
NcoI CCATGG 4 cut(s) 16, 371, 807, 1118
NdeI CATATG 1 cut(s) 862
NdeII GATC 6 cut(s) 205, 367, 448, 553, 1080, 1267
NlaIII CATG 7 cut(s) 20, 375, 531, 811, 833, 1106, 1122
NlaIV GGNNCC 2 cut(s) 369, 912
NmuCI GTSAC 1 cut(s) 1062
NspI RCATGY 1 cut(s) 531
PciI ACATGT 1 cut(s) 527
PciSI GCTCTTC 1 cut(s) 1378
PdmI GAANNNNTTC 1 cut(s) 399
PfeI GAWTC 7 cut(s) 118, 434, 892, 929, 959, 1021, 1341
PfoI TCCNGGA 1 cut(s) 1205
PinAI ACCGGT 1 cut(s) 534
PkrI GCNGC 7 cut(s) 85, 390, 509, 805, 816, 1162, 1312
PleI GAGTC 2 cut(s) 284, 300
PpsI GAGTC 2 cut(s) 284, 300
PscI ACATGT 1 cut(s) 527
Psp1406I AACGTT 1 cut(s) 983
Psp6I CCWGG 1 cut(s) 1333
PspGI CCWGG 1 cut(s) 1333
PspN4I GGNNCC 2 cut(s) 369, 912
PspPI GGNCC 1 cut(s) 910
PstI CTGCAG 1 cut(s) 1312
PsuI RGATCY 2 cut(s) 367, 1267
PvuII CAGCTG 1 cut(s) 1163
RsaI GTAC 1 cut(s) 196
RsaNI GTAC 1 cut(s) 195
SapI GCTCTTC 1 cut(s) 1378
SaqAI TTAA 6 cut(s) 338, 501, 573, 974, 1136, 1227
SatI GCNGC 7 cut(s) 84, 389, 508, 804, 815, 1161, 1311
Sau3AI GATC 6 cut(s) 205, 367, 448, 553, 1080, 1267
Sau96I GGNCC 1 cut(s) 910
SchI GAGTC 2 cut(s) 285, 301
ScrFI CCNGG 3 cut(s) 1095, 1207, 1335
SduI GDGCHC 1 cut(s) 754
SfaNI GCATC 1 cut(s) 1523
SfcI CTRYAG 1 cut(s) 1308
SinI GGWCC 1 cut(s) 910
SmlI CTYRAG 4 cut(s) 337, 1226, 1345, 1468
SmoI CTYRAG 4 cut(s) 337, 1226, 1345, 1468
SpeI ACTAGT 1 cut(s) 221
Sse9I AATT 7 cut(s) 343, 595, 713, 896, 923, 1219, 1250
SsiI CCGC 2 cut(s) 164, 804
SspMI CTAG 3 cut(s) 222, 392, 1446
StyD4I CCNGG 3 cut(s) 1093, 1205, 1333
StyI CCWWGG 4 cut(s) 16, 371, 807, 1118
TaaI ACNGT 3 cut(s) 1062, 1288, 1387
TaiI ACGT 2 cut(s) 608, 986
TaqI TCGA 2 cut(s) 121, 543
TasI AATT 7 cut(s) 343, 595, 713, 896, 923, 1219, 1250
TatI WGTACW 1 cut(s) 194
TauI GCSGC 1 cut(s) 806
TfiI GAWTC 7 cut(s) 118, 434, 892, 929, 959, 1021, 1341
Tru1I TTAA 6 cut(s) 338, 501, 573, 974, 1136, 1227
Tru9I TTAA 6 cut(s) 338, 501, 573, 974, 1136, 1227
TscAI CASTG 3 cut(s) 388, 1147, 1291
TseFI GTSAC 1 cut(s) 1062
TseI GCWGC 6 cut(s) 83, 388, 507, 814, 1160, 1310
Tsp45I GTSAC 1 cut(s) 1062
TspDTI ATGAA 8 cut(s) 281, 437, 896, 936, 957, 1071, 1091, 1365
TspGWI ACGGA 1 cut(s) 227
TspRI CASTG 3 cut(s) 388, 1147, 1291
Vha464I CTTAAG 2 cut(s) 337, 1226
VpaK11BI GGWCC 1 cut(s) 910
XapI RAATTY 3 cut(s) 343, 1219, 1250
XceI RCATGY 1 cut(s) 531
XmnI GAANNNNTTC 1 cut(s) 399
XspI CTAG 3 cut(s) 222, 392, 1446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.