Rroxscaffold_6G00396350

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0011254
Physical Location & Seq
Reverse (-)
17789013 .. 17789860
848 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00396350.1

Sequence Viewer

Length: 645 bp
ATGTATAAATTCGTGCTGCAGGGAATCAGAACATATGATTATATCTTGGCAATGAAAGAGGAGATCAACCAGTCTATGGAAATGGATCCATTTAATGATGATTCAGATTTATCCTCAGATGAGAGCATTAGTGATTTTGACTCACCCGAAAAGCCGTCATGTGTATCAAGGTTTATATGCAGAGGACATGATGCAGGAATTCAGAATCCCAGAAGGCTGTCCATAAGAATTGATGGTGATCCTCAGCCCTCCACGTCAACCAAGCCACAAGGTTTCCGCGTCAGCATTAATCCATGGAGGCTGATAAAGTTGAGCAAAGAGAAGGCATTGCTCGCAGCTGAGAAAGCCAGAGAAAGAATTTTGAAACAGAAGCCATCTGCAGAGCATGATTCATTGAGACCACTACCATTAGAGACGAAATCCGGACCATTGACGAGGAGCACAGATAGAACCACAGCCACTGCAACTACAGCAGGATCAGGCTTAACACCTCTAATATCGAAAGGGGGTGGATGCCAGGGTCACCTGTTGCAAAGTTTTCGAGCCCGAGAAGGAGATGTGTCCAGGGAGCTGGAGACCTATATCTCGAGGCAGGTTCTGTGTTCTGTTATAAAGAAGGATGGCAGTGAAGCATCCCCAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

214

Amino Acids

23.76

Weight (kDa)

8.65

Isoelectric Point (pI)

47.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011254)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01730
fragaria_vesca FvH4_1g26210 FvH4_1g26210
malus_domestica MD09G1290600.v1.1 MD17G1285300.v1.1
prunus_persica Prupe.3G002400_v2.0.a1 Prupe.3G002400_v2.0.a1
pyrus_communis pycom09g19820 pycom17g28110
rosa_chinensis RchiOBHm_Chr3g0485751
rosa_laevigata RLG00000023128
rosa_multiflora Rmu_sc0003005.1_g000002
rosa_roxburghii Rroxscaffold_6G00396350 Rroxscaffold_6G00396370
rosa_rugosa Rorug03G0221100
rosa_samantha Rh3AG270400 Rh3BG305900 Rh3CG304300 Rh3DG300400
rosa_wichuraiana Rw3G024080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 611
Acc36I ACCTGC 1 cut(s) 583
AccB7I CCANNNNNTGG 1 cut(s) 76
AccII CGCG 1 cut(s) 279
AccIII TCCGGA 1 cut(s) 422
AciI CCGC 1 cut(s) 277
AclWI GGATC 4 cut(s) 80, 93, 233, 484
AcsI RAATTY 3 cut(s) 8, 198, 357
AfiI CCNNNNNNNGG 1 cut(s) 76
AgsI TTSAA 1 cut(s) 364
AjiI CACGTC 1 cut(s) 255
AjnI CCWGG 2 cut(s) 516, 563
AluBI AGCT 2 cut(s) 338, 571
AluI AGCT 2 cut(s) 338, 571
Alw21I GWGCWC 1 cut(s) 443
Alw26I GTCTC 3 cut(s) 391, 407, 569
AlwI GGATC 4 cut(s) 80, 93, 233, 484
AlwNI CAGNNNCTG 2 cut(s) 461, 598
Ama87I CYCGRG 2 cut(s) 546, 586
Aor13HI TCCGGA 1 cut(s) 422
ApeKI GCWGC 2 cut(s) 16, 335
ApoI RAATTY 3 cut(s) 8, 198, 357
AseI ATTAAT 1 cut(s) 288
AspS9I GGNCC 1 cut(s) 425
AsuHPI GGTGA 3 cut(s) 135, 248, 515
AvaI CYCGRG 2 cut(s) 546, 586
AvaII GGWCC 1 cut(s) 425
BamHI GGATCC 1 cut(s) 85
BanII GRGCYC 1 cut(s) 547
Bbv12I GWGCWC 1 cut(s) 443
BbvCI CCTCAGC 1 cut(s) 243
BbvI GCAGC 2 cut(s) 3, 347
BccI CCATC 3 cut(s) 227, 382, 614
BceAI ACGGC 1 cut(s) 139
BcgI CGANNNNNNTGC 2 cut(s) 521, 555
BciT130I CCWGG 2 cut(s) 518, 565
BcoDI GTCTC 3 cut(s) 391, 407, 569
BfmI CTRYAG 3 cut(s) 17, 378, 468
BfuAI ACCTGC 1 cut(s) 583
BisI GCNGC 2 cut(s) 17, 336
BlsI GCNGC 2 cut(s) 18, 337
Bme1390I CCNGG 2 cut(s) 518, 565
Bme18I GGWCC 1 cut(s) 425
BmeT110I CYCGRG 2 cut(s) 546, 586
BmgBI CACGTC 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 425
BmiI GGNNCC 1 cut(s) 87
BmrFI CCNGG 2 cut(s) 518, 565
BmsI GCATC 3 cut(s) 181, 503, 641
BpmI CTGGAG 1 cut(s) 593
Bpu10I CCTNAGC 1 cut(s) 243
BsaBI GATNNNNATC 1 cut(s) 237
BsaI GGTCTC 2 cut(s) 391, 569
BsaJI CCNNGG 3 cut(s) 293, 517, 564
BsaWI WCCGGW 1 cut(s) 422
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 70
Bse3DI GCAATG 2 cut(s) 57, 326
Bse8I GATNNNNATC 1 cut(s) 237
BseAI TCCGGA 1 cut(s) 422
BseBI CCWGG 2 cut(s) 518, 565
BseDI CCNNGG 3 cut(s) 293, 517, 564
BseGI GGATG 3 cut(s) 518, 625, 632
BseJI GATNNNNATC 1 cut(s) 237
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMI GCAATG 2 cut(s) 57, 326
BseMII CTCAG 3 cut(s) 129, 257, 330
BseNI ACTGG 1 cut(s) 70
BseRI GAGGAG 2 cut(s) 74, 451
BseXI GCAGC 2 cut(s) 3, 347
Bsh1236I CGCG 1 cut(s) 279
BsiHKAI GWGCWC 1 cut(s) 443
BsiHKCI CYCGRG 2 cut(s) 546, 586
BsiSI CCGG 1 cut(s) 423
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 3 cut(s) 391, 407, 569
BsmBI CGTCTC 1 cut(s) 407
Bso31I GGTCTC 2 cut(s) 391, 569
BsoBI CYCGRG 2 cut(s) 546, 586
Bsp1286I GDGCHC 2 cut(s) 443, 547
Bsp13I TCCGGA 1 cut(s) 422
Bsp143I GATC 4 cut(s) 63, 85, 238, 476
Bsp19I CCATGG 1 cut(s) 293
BspACI CCGC 1 cut(s) 277
BspCNI CTCAG 3 cut(s) 128, 256, 331
BspEI TCCGGA 1 cut(s) 422
BspFNI CGCG 1 cut(s) 279
BspLI GGNNCC 1 cut(s) 87
BspMAI CTGCAG 2 cut(s) 21, 382
BspMI ACCTGC 1 cut(s) 583
BspPI GGATC 4 cut(s) 80, 93, 233, 484
BspTNI GGTCTC 2 cut(s) 391, 569
BsrDI GCAATG 2 cut(s) 57, 326
BsrI ACTGG 1 cut(s) 70
BssECI CCNNGG 3 cut(s) 293, 517, 564
BssMI GATC 4 cut(s) 63, 85, 238, 476
BssT1I CCWWGG 1 cut(s) 293
Bst2UI CCWGG 2 cut(s) 518, 565
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 3 cut(s) 115, 243, 339
BstDSI CCRYGG 1 cut(s) 293
BstEII GGTNACC 1 cut(s) 521
BstF5I GGATG 3 cut(s) 518, 625, 632
BstFNI CGCG 1 cut(s) 279
BstKTI GATC 4 cut(s) 66, 88, 241, 479
BstMAI GTCTC 3 cut(s) 391, 407, 569
BstMBI GATC 4 cut(s) 63, 85, 238, 476
BstMWI GCNNNNNNNGC 3 cut(s) 332, 344, 470
BstNI CCWGG 2 cut(s) 518, 565
BstPI GGTNACC 1 cut(s) 521
BstSCI CCNGG 2 cut(s) 516, 563
BstSFI CTRYAG 3 cut(s) 17, 378, 468
BstUI CGCG 1 cut(s) 279
BstV1I GCAGC 2 cut(s) 3, 347
BstX2I RGATCY 1 cut(s) 85
BstXI CCANNNNNNTGG 1 cut(s) 571
BstYI RGATCY 1 cut(s) 85
BtgI CCRYGG 1 cut(s) 293
BtrI CACGTC 1 cut(s) 255
BtsCI GGATG 3 cut(s) 518, 625, 632
BtsI GCAGTG 2 cut(s) 459, 631
BtsIMutI CAGTG 2 cut(s) 459, 631
BveI ACCTGC 1 cut(s) 583
Cac8I GCNNGC 1 cut(s) 333
CaiI CAGNNNCTG 2 cut(s) 461, 598
Cfr13I GGNCC 1 cut(s) 425
CseI GACGC 1 cut(s) 268
CviAII CATG 4 cut(s) 159, 188, 294, 386
DdeI CTNAG 3 cut(s) 115, 243, 339
DpnI GATC 4 cut(s) 65, 87, 240, 478
DpnII GATC 4 cut(s) 63, 85, 238, 476
Eco130I CCWWGG 1 cut(s) 293
Eco24I GRGCYC 1 cut(s) 547
Eco31I GGTCTC 2 cut(s) 391, 569
Eco47I GGWCC 1 cut(s) 425
Eco88I CYCGRG 2 cut(s) 546, 586
Eco91I GGTNACC 1 cut(s) 521
EcoO65I GGTNACC 1 cut(s) 521
EcoRI GAATTC 1 cut(s) 198
EcoRII CCWGG 2 cut(s) 516, 563
EcoT14I CCWWGG 1 cut(s) 293
EcoT38I GRGCYC 1 cut(s) 547
ErhI CCWWGG 1 cut(s) 293
Esp3I CGTCTC 1 cut(s) 407
FaeI CATG 4 cut(s) 162, 191, 297, 389
FatI CATG 4 cut(s) 158, 187, 293, 385
FauNDI CATATG 1 cut(s) 34
Fnu4HI GCNGC 2 cut(s) 17, 336
FokI GGATG 3 cut(s) 525, 619, 632
FriOI GRGCYC 1 cut(s) 547
Fsp4HI GCNGC 2 cut(s) 17, 336
GluI GCNGC 2 cut(s) 17, 336
GsuI CTGGAG 1 cut(s) 593
HapII CCGG 1 cut(s) 423
HgaI GACGC 1 cut(s) 268
Hin1II CATG 4 cut(s) 162, 191, 297, 389
HincII GTYRAC 1 cut(s) 258
HindII GTYRAC 1 cut(s) 258
HinfI GANTC 5 cut(s) 24, 101, 140, 205, 389
HpaII CCGG 1 cut(s) 423
HphI GGTGA 3 cut(s) 135, 248, 515
Hpy166II GTNNAC 1 cut(s) 258
Hpy188I TCNGA 4 cut(s) 29, 106, 118, 204
Hpy188III TCNNGA 2 cut(s) 423, 586
Hpy8I GTNNAC 1 cut(s) 258
HpyAV CCTTC 4 cut(s) 207, 316, 545, 610
HpyCH4IV ACGT 1 cut(s) 254
HpyCH4V TGCA 6 cut(s) 19, 180, 194, 380, 464, 532
HpyF10VI GCNNNNNNNGC 3 cut(s) 332, 344, 470
HpyF3I CTNAG 3 cut(s) 115, 243, 339
HpySE526I ACGT 1 cut(s) 254
Hsp92II CATG 4 cut(s) 162, 191, 297, 389
Kpn2I TCCGGA 1 cut(s) 422
Kzo9I GATC 4 cut(s) 63, 85, 238, 476
LmnI GCTCC 2 cut(s) 438, 568
Lsp1109I GCAGC 2 cut(s) 3, 347
LweI GCATC 3 cut(s) 181, 503, 641
MaeII ACGT 1 cut(s) 254
MaeIII GTNAC 1 cut(s) 521
MalI GATC 4 cut(s) 65, 87, 240, 478
MboI GATC 4 cut(s) 63, 85, 238, 476
MflI RGATCY 1 cut(s) 85
MhlI GDGCHC 2 cut(s) 443, 547
MluCI AATT 4 cut(s) 8, 198, 228, 357
MlyI GAGTC 1 cut(s) 134
MnlI CCTC 9 cut(s) 52, 124, 176, 252, 259, 291, 429, 501, 582
MroI TCCGGA 1 cut(s) 422
MseI TTAA 3 cut(s) 93, 288, 485
MspA1I CMGCKG 1 cut(s) 338
MspI CCGG 1 cut(s) 423
MspR9I CCNGG 2 cut(s) 518, 565
MvaI CCWGG 2 cut(s) 518, 565
MvnI CGCG 1 cut(s) 279
MwoI GCNNNNNNNGC 3 cut(s) 332, 344, 470
NcoI CCATGG 1 cut(s) 293
NdeI CATATG 1 cut(s) 34
NdeII GATC 4 cut(s) 63, 85, 238, 476
NlaIII CATG 4 cut(s) 162, 191, 297, 389
NlaIV GGNNCC 1 cut(s) 87
NmuCI GTSAC 1 cut(s) 521
PaeR7I CTCGAG 1 cut(s) 586
PfeI GAWTC 4 cut(s) 24, 101, 205, 389
PflMI CCANNNNNTGG 1 cut(s) 76
PkrI GCNGC 2 cut(s) 18, 337
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
PshBI ATTAAT 1 cut(s) 288
PsiI TTATAA 1 cut(s) 611
Psp6I CCWGG 2 cut(s) 516, 563
PspEI GGTNACC 1 cut(s) 521
PspGI CCWGG 2 cut(s) 516, 563
PspN4I GGNNCC 1 cut(s) 87
PspPI GGNCC 1 cut(s) 425
PstI CTGCAG 2 cut(s) 21, 382
PstNI CAGNNNCTG 2 cut(s) 461, 598
PsuI RGATCY 1 cut(s) 85
PvuII CAGCTG 1 cut(s) 338
SaqAI TTAA 3 cut(s) 93, 288, 485
SatI GCNGC 2 cut(s) 17, 336
Sau3AI GATC 4 cut(s) 63, 85, 238, 476
Sau96I GGNCC 1 cut(s) 425
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 2 cut(s) 518, 565
SduI GDGCHC 2 cut(s) 443, 547
SetI ASST 9 cut(s) 173, 257, 274, 340, 493, 528, 573, 581, 597
SfaNI GCATC 3 cut(s) 181, 503, 641
SfcI CTRYAG 3 cut(s) 17, 378, 468
Sfr274I CTCGAG 1 cut(s) 586
SinI GGWCC 1 cut(s) 425
SlaI CTCGAG 1 cut(s) 586
SmlI CTYRAG 1 cut(s) 586
SmoI CTYRAG 1 cut(s) 586
Sse9I AATT 4 cut(s) 8, 198, 228, 357
SsiI CCGC 1 cut(s) 277
StyD4I CCNGG 2 cut(s) 516, 563
StyI CCWWGG 1 cut(s) 293
TaiI ACGT 1 cut(s) 257
TaqI TCGA 3 cut(s) 500, 541, 587
TasI AATT 4 cut(s) 8, 198, 228, 357
TfiI GAWTC 4 cut(s) 24, 101, 205, 389
Tru1I TTAA 3 cut(s) 93, 288, 485
Tru9I TTAA 3 cut(s) 93, 288, 485
TscAI CASTG 2 cut(s) 466, 631
TseFI GTSAC 1 cut(s) 521
TseI GCWGC 2 cut(s) 16, 335
Tsp45I GTSAC 1 cut(s) 521
TspDTI ATGAA 2 cut(s) 68, 381
TspRI CASTG 2 cut(s) 466, 631
Van91I CCANNNNNTGG 1 cut(s) 76
VpaK11BI GGWCC 1 cut(s) 425
VspI ATTAAT 1 cut(s) 288
XapI RAATTY 3 cut(s) 8, 198, 357
XhoI CTCGAG 1 cut(s) 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.