Rorug03G0221100

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0011254
Physical Location & Seq
Reverse (-)
20183441 .. 20183851
411 bp
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UTR
Exon/CDS
Intron
Rorug03G0221100.1

Sequence Viewer

Length: 411 bp
ATGAGGTCAGTTGAAGTCCCTAGCTACAACACAAGTAGTGGTGCCAATCAGGCCAAATATGGGAATGCATATAAAGATCCCAAGTTTACAGTTGAGGGAAATCTAGAAGAATCTTTAAATGACATGCAATTGCTGCAAGAAGTGTATTACCTCTTTGAGAGCTTCAAAGGACTCATTGTTGGCTTCCTTCTTGGCTCCAAAGACCGAGAACTGAGTCGAGATTTCTTCCTTAAAAGAACCTATACTAGAGCTTTTCAGTTGATAGAGTACGAGCTCAGCTTCATGTATGAGGTTCTTCACACCAAGGTGGTTGTGGTGCGTCACAAAATTGGGTACACCCTCCGCTTAGTAAGCTTTGAGGAACATGTCTTTTTAATGCCTGGATCGATCATCTCATCCAGACTCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

136

Amino Acids

15.8

Weight (kDa)

6.84

Isoelectric Point (pI)

33.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4220 PF13968 32 - 119 8e-19 Domain of unknown function (DUF4220)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011254)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01730
fragaria_vesca FvH4_1g26210 FvH4_1g26210
malus_domestica MD09G1290600.v1.1 MD17G1285300.v1.1
prunus_persica Prupe.3G002400_v2.0.a1 Prupe.3G002400_v2.0.a1
pyrus_communis pycom09g19820 pycom17g28110
rosa_chinensis RchiOBHm_Chr3g0485751
rosa_laevigata RLG00000023128
rosa_multiflora Rmu_sc0003005.1_g000002
rosa_roxburghii Rroxscaffold_6G00396350 Rroxscaffold_6G00396370
rosa_rugosa Rorug03G0221100
rosa_samantha Rh3AG270400 Rh3BG305900 Rh3CG304300 Rh3DG300400
rosa_wichuraiana Rw3G024080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 41
AciI CCGC 1 cut(s) 343
AclWI GGATC 2 cut(s) 71, 391
AfaI GTAC 2 cut(s) 269, 335
AfiI CCNNNNNNNGG 1 cut(s) 60
AflIII ACRYGT 1 cut(s) 364
AgsI TTSAA 2 cut(s) 14, 166
AjnI CCWGG 1 cut(s) 379
AleI CACNNNNGTG 1 cut(s) 305
AluBI AGCT 6 cut(s) 24, 162, 251, 274, 279, 354
AluI AGCT 6 cut(s) 24, 162, 251, 274, 279, 354
Alw21I GWGCWC 1 cut(s) 276
AlwI GGATC 2 cut(s) 71, 391
AoxI GGCC 1 cut(s) 51
ApeKI GCWGC 1 cut(s) 133
BanI GGYRCC 1 cut(s) 41
BanII GRGCYC 1 cut(s) 276
Bbv12I GWGCWC 1 cut(s) 276
BbvI GCAGC 1 cut(s) 120
BciT130I CCWGG 1 cut(s) 381
BfaI CTAG 3 cut(s) 21, 104, 246
BglI GCCNNNNNGGC 1 cut(s) 50
BisI GCNGC 1 cut(s) 134
BlpI GCTNAGC 1 cut(s) 275
BlsI GCNGC 1 cut(s) 135
Bme1390I CCNGG 1 cut(s) 381
BmiI GGNNCC 2 cut(s) 43, 196
BmrFI CCNGG 1 cut(s) 381
Bpu1102I GCTNAGC 1 cut(s) 275
Bsa29I ATCGAT 1 cut(s) 386
BsaJI CCNNGG 1 cut(s) 303
Bsc4I CCNNNNNNNGG 1 cut(s) 60
BseBI CCWGG 1 cut(s) 381
BseCI ATCGAT 1 cut(s) 386
BseDI CCNNGG 1 cut(s) 303
BseGI GGATG 1 cut(s) 395
BseLI CCNNNNNNNGG 1 cut(s) 60
BseMII CTCAG 2 cut(s) 203, 289
BseXI GCAGC 1 cut(s) 120
BshFI GGCC 1 cut(s) 53
BshNI GGYRCC 1 cut(s) 41
BshVI ATCGAT 1 cut(s) 386
BsiHKAI GWGCWC 1 cut(s) 276
BslFI GGGAC 1 cut(s) 2
BslI CCNNNNNNNGG 1 cut(s) 60
BsmFI GGGAC 1 cut(s) 2
BsmI GAATGC 1 cut(s) 70
BsnI GGCC 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 276
Bsp143I GATC 3 cut(s) 76, 383, 387
Bsp1720I GCTNAGC 1 cut(s) 275
BspACI CCGC 1 cut(s) 343
BspANI GGCC 1 cut(s) 53
BspCNI CTCAG 2 cut(s) 204, 288
BspDI ATCGAT 1 cut(s) 386
BspLI GGNNCC 2 cut(s) 43, 196
BspPI GGATC 2 cut(s) 71, 391
BspT107I GGYRCC 1 cut(s) 41
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 3 cut(s) 76, 383, 387
BssT1I CCWWGG 1 cut(s) 303
Bst2UI CCWGG 1 cut(s) 381
Bst4CI ACNGT 1 cut(s) 91
BstAPI GCANNNNNTGC 1 cut(s) 133
BstDEI CTNAG 3 cut(s) 212, 275, 346
BstF5I GGATG 1 cut(s) 395
BstKTI GATC 3 cut(s) 79, 386, 390
BstMBI GATC 3 cut(s) 76, 383, 387
BstMWI GCNNNNNNNGC 3 cut(s) 50, 133, 351
BstNI CCWGG 1 cut(s) 381
BstNSI RCATGY 2 cut(s) 127, 368
BstSCI CCNGG 1 cut(s) 379
BstV1I GCAGC 1 cut(s) 120
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
Bsu15I ATCGAT 1 cut(s) 386
BsuRI GGCC 1 cut(s) 53
BsuTUI ATCGAT 1 cut(s) 386
BtsCI GGATG 1 cut(s) 395
ClaI ATCGAT 1 cut(s) 386
CseI GACGC 1 cut(s) 308
Csp6I GTAC 2 cut(s) 268, 334
CviAII CATG 3 cut(s) 124, 283, 365
CviJI RGCY 9 cut(s) 24, 53, 162, 183, 195, 251, 274, 279, 354
CviKI_1 RGCY 9 cut(s) 24, 53, 162, 183, 195, 251, 274, 279, 354
CviQI GTAC 2 cut(s) 268, 334
DdeI CTNAG 3 cut(s) 212, 275, 346
DpnI GATC 3 cut(s) 78, 385, 389
DpnII GATC 3 cut(s) 76, 383, 387
DraI TTTAAA 1 cut(s) 117
Ecl136II GAGCTC 1 cut(s) 274
Eco130I CCWWGG 1 cut(s) 303
Eco24I GRGCYC 1 cut(s) 276
Eco53kI GAGCTC 1 cut(s) 274
EcoICRI GAGCTC 1 cut(s) 274
EcoRII CCWGG 1 cut(s) 379
EcoT14I CCWWGG 1 cut(s) 303
EcoT22I ATGCAT 1 cut(s) 70
EcoT38I GRGCYC 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 303
FaeI CATG 3 cut(s) 127, 286, 368
FaiI YATR 9 cut(s) 60, 70, 72, 125, 243, 284, 288, 366, 409
FaqI GGGAC 1 cut(s) 2
FatI CATG 3 cut(s) 123, 282, 364
Fnu4HI GCNGC 1 cut(s) 134
FokI GGATG 1 cut(s) 382
FriOI GRGCYC 1 cut(s) 276
Fsp4HI GCNGC 1 cut(s) 134
FspBI CTAG 3 cut(s) 21, 104, 246
GluI GCNGC 1 cut(s) 134
HaeIII GGCC 1 cut(s) 53
HgaI GACGC 1 cut(s) 308
Hin1II CATG 3 cut(s) 127, 286, 368
HindIII AAGCTT 1 cut(s) 352
HinfI GANTC 4 cut(s) 110, 171, 214, 402
Hpy166II GTNNAC 2 cut(s) 87, 336
Hpy188III TCNNGA 3 cut(s) 104, 218, 399
Hpy8I GTNNAC 2 cut(s) 87, 336
HpyAV CCTTC 1 cut(s) 197
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4V TGCA 3 cut(s) 68, 127, 136
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 133, 351
HpyF3I CTNAG 3 cut(s) 212, 275, 346
Hsp92II CATG 3 cut(s) 127, 286, 368
Kzo9I GATC 3 cut(s) 76, 383, 387
LmnI GCTCC 1 cut(s) 200
LpnPI CCDG 3 cut(s) 35, 366, 393
Lsp1109I GCAGC 1 cut(s) 120
MaeI CTAG 3 cut(s) 21, 104, 246
MaeIII GTNAC 1 cut(s) 320
MalI GATC 3 cut(s) 78, 385, 389
MboI GATC 3 cut(s) 76, 383, 387
MboII GAAGA 3 cut(s) 119, 217, 287
MfeI CAATTG 1 cut(s) 128
MflI RGATCY 1 cut(s) 76
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 2 cut(s) 128, 327
MlyI GAGTC 3 cut(s) 165, 223, 396
MnlI CCTC 5 cut(s) 88, 161, 283, 350, 352
Mph1103I ATGCAT 1 cut(s) 70
MseI TTAA 3 cut(s) 116, 231, 374
MslI CAYNNNNRTG 1 cut(s) 305
MspR9I CCNGG 1 cut(s) 381
MunI CAATTG 1 cut(s) 128
Mva1269I GAATGC 1 cut(s) 70
MvaI CCWGG 1 cut(s) 381
MwoI GCNNNNNNNGC 3 cut(s) 50, 133, 351
NdeII GATC 3 cut(s) 76, 383, 387
NlaIII CATG 3 cut(s) 127, 286, 368
NlaIV GGNNCC 2 cut(s) 43, 196
NmuCI GTSAC 1 cut(s) 320
NsiI ATGCAT 1 cut(s) 70
NspI RCATGY 2 cut(s) 127, 368
OliI CACNNNNGTG 1 cut(s) 305
PciI ACATGT 1 cut(s) 364
PctI GAATGC 1 cut(s) 70
PfeI GAWTC 1 cut(s) 110
PkrI GCNGC 1 cut(s) 135
PleI GAGTC 3 cut(s) 165, 222, 396
PpsI GAGTC 3 cut(s) 165, 222, 396
PscI ACATGT 1 cut(s) 364
Psp124BI GAGCTC 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 379
PspGI CCWGG 1 cut(s) 379
PspN4I GGNNCC 2 cut(s) 43, 196
PsuI RGATCY 1 cut(s) 76
RsaI GTAC 2 cut(s) 269, 335
RsaNI GTAC 2 cut(s) 268, 334
RseI CAYNNNNRTG 1 cut(s) 305
SacI GAGCTC 1 cut(s) 276
SaqAI TTAA 3 cut(s) 116, 231, 374
SatI GCNGC 1 cut(s) 134
Sau3AI GATC 3 cut(s) 76, 383, 387
SchI GAGTC 3 cut(s) 165, 223, 396
ScrFI CCNGG 1 cut(s) 381
SduI GDGCHC 1 cut(s) 276
SmiMI CAYNNNNRTG 1 cut(s) 305
Sse9I AATT 2 cut(s) 128, 327
SsiI CCGC 1 cut(s) 343
SspMI CTAG 3 cut(s) 21, 104, 246
SstI GAGCTC 1 cut(s) 276
StyD4I CCNGG 1 cut(s) 379
StyI CCWWGG 1 cut(s) 303
TaaI ACNGT 1 cut(s) 91
TaqI TCGA 2 cut(s) 217, 386
TaqII GACCGA 1 cut(s) 219
TasI AATT 2 cut(s) 128, 327
TfiI GAWTC 1 cut(s) 110
Tru1I TTAA 3 cut(s) 116, 231, 374
Tru9I TTAA 3 cut(s) 116, 231, 374
TseFI GTSAC 1 cut(s) 320
TseI GCWGC 1 cut(s) 133
Tsp45I GTSAC 1 cut(s) 320
TspDTI ATGAA 1 cut(s) 271
XbaI TCTAGA 1 cut(s) 103
XceI RCATGY 2 cut(s) 127, 368
XcmI CCANNNNNNNNNTGG 1 cut(s) 310
XspI CTAG 3 cut(s) 21, 104, 246
Zsp2I ATGCAT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.