Rroxscaffold_6G00396370

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0011254
Physical Location & Seq
Reverse (-)
17796433 .. 17798201
1769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00396370.1

Sequence Viewer

Length: 594 bp
ATGGCTGGCAACGCCCCTTCCATCCTTTGCAGATGGTGGGAATCGCGGTTTTTAGTTTTTCTGGTGGTGACCTTCTACACATTCCTGGGACTTTTCCTGGGAAATCGAGTCGCGGAGATTACAGTCACCACCGTCTTCTCCATGGTTACTGTTTCGGTCATGTTTCTCTTCATCCGGTGCACCGCGACGGACCCAACTGACAGAACCAGCTTCAAGAAGAAGAAGAAGATGAAGAAGAAGAAAGGCTCCAGAGGAGGTGGTAAAGGGTACCGGAACTTAATCACTGGTTCATTCTGGGGCAGATTATGGTCAGGTGAAAAAACGAAGCAAGCACTGCAGGACATGCAACCGGTGCGTTGTAGGCTTCGATCACCACTGCAGGGTCTTGCTAACTCTATTGACAGCTTATGGTTCAGCAGCAATGGGACAGCTTTTTTCTTTCATGTGGTTCTCATTAAGAAGGAGATCAACCAGTCTATGGAAATGGATCCATTTAATGATGATTCAGATTTATCCTCAGATGAGAGCATTAGTGATTTTGACTCACCCGAAAAAGCCGTCATGTGTATCAAGGTTTATATGCAGAGGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

197

Amino Acids

22.45

Weight (kDa)

9.63

Isoelectric Point (pI)

47.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011254)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01730
fragaria_vesca FvH4_1g26210 FvH4_1g26210
malus_domestica MD09G1290600.v1.1 MD17G1285300.v1.1
prunus_persica Prupe.3G002400_v2.0.a1 Prupe.3G002400_v2.0.a1
pyrus_communis pycom09g19820 pycom17g28110
rosa_chinensis RchiOBHm_Chr3g0485751
rosa_laevigata RLG00000023128
rosa_multiflora Rmu_sc0003005.1_g000002
rosa_roxburghii Rroxscaffold_6G00396350 Rroxscaffold_6G00396370
rosa_rugosa Rorug03G0221100
rosa_samantha Rh3AG270400 Rh3BG305900 Rh3CG304300 Rh3DG300400
rosa_wichuraiana Rw3G024080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 267
AccB1I GGYRCC 1 cut(s) 267
AccB7I CCANNNNNTGG 1 cut(s) 478
AccII CGCG 3 cut(s) 46, 113, 185
AciI CCGC 3 cut(s) 46, 113, 183
AclWI GGATC 2 cut(s) 482, 495
AfaI GTAC 1 cut(s) 269
AfiI CCNNNNNNNGG 2 cut(s) 380, 478
AgeI ACCGGT 1 cut(s) 349
AgsI TTSAA 1 cut(s) 214
AjnI CCWGG 2 cut(s) 84, 96
AluBI AGCT 3 cut(s) 210, 405, 431
AluI AGCT 3 cut(s) 210, 405, 431
Alw21I GWGCWC 1 cut(s) 182
Alw44I GTGCAC 1 cut(s) 178
AlwI GGATC 2 cut(s) 482, 495
ApaLI GTGCAC 1 cut(s) 178
ApeKI GCWGC 1 cut(s) 417
ArsI GACNNNNNNTTYG 2 cut(s) 543, 575
AsiGI ACCGGT 1 cut(s) 349
Asp718I GGTACC 1 cut(s) 267
AspS9I GGNCC 1 cut(s) 190
AsuHPI GGTGA 5 cut(s) 79, 118, 326, 363, 537
AvaII GGWCC 1 cut(s) 190
BaeGI GKGCMC 1 cut(s) 182
BamHI GGATCC 1 cut(s) 487
BanI GGYRCC 1 cut(s) 267
BbsI GAAGAC 1 cut(s) 127
Bbv12I GWGCWC 1 cut(s) 182
BbvI GCAGC 1 cut(s) 429
BccI CCATC 2 cut(s) 27, 29
BceAI ACGGC 1 cut(s) 542
BciT130I CCWGG 2 cut(s) 86, 98
BfmI CTRYAG 2 cut(s) 335, 377
BisI GCNGC 1 cut(s) 418
BlsI GCNGC 1 cut(s) 419
Bme1390I CCNGG 2 cut(s) 86, 98
Bme18I GGWCC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 4 cut(s) 192, 247, 269, 489
BmrFI CCNGG 2 cut(s) 86, 98
BpiI GAAGAC 1 cut(s) 127
BpmI CTGGAG 1 cut(s) 232
BsaJI CCNNGG 3 cut(s) 85, 97, 141
BsaWI WCCGGW 3 cut(s) 174, 270, 349
Bsc4I CCNNNNNNNGG 2 cut(s) 380, 478
Bse118I RCCGGY 1 cut(s) 349
Bse1I ACTGG 2 cut(s) 289, 472
Bse3DI GCAATG 1 cut(s) 427
BseBI CCWGG 2 cut(s) 86, 98
BseDI CCNNGG 3 cut(s) 85, 97, 141
BseGI GGATG 2 cut(s) 21, 171
BseLI CCNNNNNNNGG 2 cut(s) 380, 478
BseMI GCAATG 1 cut(s) 427
BseMII CTCAG 1 cut(s) 531
BseNI ACTGG 2 cut(s) 289, 472
BseRI GAGGAG 1 cut(s) 267
BseSI GKGCMC 1 cut(s) 182
BseXI GCAGC 1 cut(s) 429
Bsh1236I CGCG 3 cut(s) 46, 113, 185
BshNI GGYRCC 1 cut(s) 267
BshTI ACCGGT 1 cut(s) 349
BsiHKAI GWGCWC 1 cut(s) 182
BsiSI CCGG 3 cut(s) 175, 271, 350
BslFI GGGAC 2 cut(s) 102, 439
BslI CCNNNNNNNGG 2 cut(s) 380, 478
BsmFI GGGAC 2 cut(s) 102, 439
Bsp1286I GDGCHC 1 cut(s) 182
Bsp143I GATC 3 cut(s) 368, 465, 487
Bsp19I CCATGG 1 cut(s) 141
BspACI CCGC 3 cut(s) 46, 113, 183
BspCNI CTCAG 1 cut(s) 530
BspFNI CGCG 3 cut(s) 46, 113, 185
BspLI GGNNCC 4 cut(s) 192, 247, 269, 489
BspMAI CTGCAG 2 cut(s) 339, 381
BspPI GGATC 2 cut(s) 482, 495
BspT107I GGYRCC 1 cut(s) 267
BsrDI GCAATG 1 cut(s) 427
BsrFI RCCGGY 1 cut(s) 349
BsrI ACTGG 2 cut(s) 289, 472
BssAI RCCGGY 1 cut(s) 349
BssECI CCNNGG 3 cut(s) 85, 97, 141
BssMI GATC 3 cut(s) 368, 465, 487
BssT1I CCWWGG 1 cut(s) 141
Bst2UI CCWGG 2 cut(s) 86, 98
Bst4CI ACNGT 3 cut(s) 124, 133, 151
Bst6I CTCTTC 1 cut(s) 173
BstAPI GCANNNNNTGC 3 cut(s) 334, 343, 352
BstC8I GCNNGC 2 cut(s) 7, 330
BstDEI CTNAG 1 cut(s) 517
BstDSI CCRYGG 1 cut(s) 141
BstEII GGTNACC 1 cut(s) 67
BstF5I GGATG 2 cut(s) 21, 171
BstFNI CGCG 3 cut(s) 46, 113, 185
BstKTI GATC 3 cut(s) 371, 468, 490
BstMBI GATC 3 cut(s) 368, 465, 487
BstMWI GCNNNNNNNGC 5 cut(s) 11, 334, 343, 352, 361
BstNI CCWGG 2 cut(s) 86, 98
BstNSI RCATGY 1 cut(s) 346
BstPI GGTNACC 1 cut(s) 67
BstSCI CCNGG 2 cut(s) 84, 96
BstSFI CTRYAG 2 cut(s) 335, 377
BstSLI GKGCMC 1 cut(s) 182
BstUI CGCG 3 cut(s) 46, 113, 185
BstV1I GCAGC 1 cut(s) 429
BstV2I GAAGAC 1 cut(s) 127
BstX2I RGATCY 1 cut(s) 487
BstYI RGATCY 1 cut(s) 487
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 2 cut(s) 21, 171
BtsI GCAGTG 2 cut(s) 332, 374
BtsIMutI CAGTG 3 cut(s) 282, 332, 374
Cac8I GCNNGC 2 cut(s) 7, 330
Cfr10I RCCGGY 1 cut(s) 349
Cfr13I GGNCC 1 cut(s) 190
Csp6I GTAC 1 cut(s) 268
CspAI ACCGGT 1 cut(s) 349
CviAII CATG 6 cut(s) 142, 160, 343, 443, 562, 591
CviJI RGCY 7 cut(s) 5, 210, 246, 364, 405, 431, 557
CviKI_1 RGCY 7 cut(s) 5, 210, 246, 364, 405, 431, 557
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 1 cut(s) 517
DpnI GATC 3 cut(s) 370, 467, 489
DpnII GATC 3 cut(s) 368, 465, 487
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
Eco130I CCWWGG 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 190
Eco91I GGTNACC 1 cut(s) 67
EcoO65I GGTNACC 1 cut(s) 67
EcoRII CCWGG 2 cut(s) 84, 96
EcoT14I CCWWGG 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 6 cut(s) 145, 163, 346, 446, 565, 594
FaqI GGGAC 2 cut(s) 102, 439
FatI CATG 6 cut(s) 141, 159, 342, 442, 561, 590
Fnu4HI GCNGC 1 cut(s) 418
FokI GGATG 2 cut(s) 8, 158
Fsp4HI GCNGC 1 cut(s) 418
GluI GCNGC 1 cut(s) 418
GsuI CTGGAG 1 cut(s) 232
HapII CCGG 3 cut(s) 175, 271, 350
Hin1II CATG 6 cut(s) 145, 163, 346, 446, 565, 594
HinfI GANTC 4 cut(s) 41, 108, 503, 542
HpaII CCGG 3 cut(s) 175, 271, 350
HphI GGTGA 5 cut(s) 79, 118, 326, 363, 537
Hpy166II GTNNAC 1 cut(s) 180
Hpy188I TCNGA 2 cut(s) 508, 520
Hpy188III TCNNGA 2 cut(s) 214, 249
Hpy8I GTNNAC 1 cut(s) 180
Hpy99I CGWCG 1 cut(s) 190
HpyAV CCTTC 3 cut(s) 27, 82, 454
HpyCH4III ACNGT 3 cut(s) 124, 133, 151
HpyCH4V TGCA 6 cut(s) 30, 180, 337, 346, 379, 583
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 334, 343, 352, 361
HpyF3I CTNAG 1 cut(s) 517
Hsp92II CATG 6 cut(s) 145, 163, 346, 446, 565, 594
KpnI GGTACC 1 cut(s) 271
Kzo9I GATC 3 cut(s) 368, 465, 487
LmnI GCTCC 1 cut(s) 251
Lsp1109I GCAGC 1 cut(s) 429
MaeIII GTNAC 3 cut(s) 67, 124, 145
MalI GATC 3 cut(s) 370, 467, 489
MboI GATC 3 cut(s) 368, 465, 487
MboII GAAGA 9 cut(s) 127, 160, 229, 232, 235, 238, 244, 247, 250
MflI RGATCY 1 cut(s) 487
MhlI GDGCHC 1 cut(s) 182
MlyI GAGTC 2 cut(s) 117, 536
MnlI CCTC 4 cut(s) 245, 248, 526, 579
MseI TTAA 3 cut(s) 278, 456, 495
MspI CCGG 3 cut(s) 175, 271, 350
MspR9I CCNGG 2 cut(s) 86, 98
MvaI CCWGG 2 cut(s) 86, 98
MvnI CGCG 3 cut(s) 46, 113, 185
MwoI GCNNNNNNNGC 5 cut(s) 11, 334, 343, 352, 361
NcoI CCATGG 1 cut(s) 141
NdeII GATC 3 cut(s) 368, 465, 487
NlaIII CATG 6 cut(s) 145, 163, 346, 446, 565, 594
NlaIV GGNNCC 4 cut(s) 192, 247, 269, 489
NmuCI GTSAC 2 cut(s) 67, 124
NspI RCATGY 1 cut(s) 346
PfeI GAWTC 2 cut(s) 41, 503
PflMI CCANNNNNTGG 1 cut(s) 478
PinAI ACCGGT 1 cut(s) 349
PkrI GCNGC 1 cut(s) 419
PleI GAGTC 2 cut(s) 116, 536
PpsI GAGTC 2 cut(s) 116, 536
Psp6I CCWGG 2 cut(s) 84, 96
PspEI GGTNACC 1 cut(s) 67
PspGI CCWGG 2 cut(s) 84, 96
PspN4I GGNNCC 4 cut(s) 192, 247, 269, 489
PspPI GGNCC 1 cut(s) 190
PstI CTGCAG 2 cut(s) 339, 381
PsuI RGATCY 1 cut(s) 487
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
SaqAI TTAA 3 cut(s) 278, 456, 495
SatI GCNGC 1 cut(s) 418
Sau3AI GATC 3 cut(s) 368, 465, 487
Sau96I GGNCC 1 cut(s) 190
SchI GAGTC 2 cut(s) 117, 536
ScrFI CCNGG 2 cut(s) 86, 98
SduI GDGCHC 1 cut(s) 182
SetI ASST 7 cut(s) 74, 212, 259, 316, 407, 433, 576
SfcI CTRYAG 2 cut(s) 335, 377
SinI GGWCC 1 cut(s) 190
SsiI CCGC 3 cut(s) 46, 113, 183
StyD4I CCNGG 2 cut(s) 84, 96
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 3 cut(s) 124, 133, 151
TaqI TCGA 2 cut(s) 106, 367
TaqII GACCGA 1 cut(s) 145
TfiI GAWTC 2 cut(s) 41, 503
Tru1I TTAA 3 cut(s) 278, 456, 495
Tru9I TTAA 3 cut(s) 278, 456, 495
TscAI CASTG 3 cut(s) 289, 339, 381
TseFI GTSAC 2 cut(s) 67, 124
TseI GCWGC 1 cut(s) 417
Tsp45I GTSAC 2 cut(s) 67, 124
TspDTI ATGAA 4 cut(s) 160, 245, 279, 431
TspGWI ACGGA 1 cut(s) 203
TspRI CASTG 3 cut(s) 289, 339, 381
Van91I CCANNNNNTGG 1 cut(s) 478
VneI GTGCAC 1 cut(s) 178
VpaK11BI GGWCC 1 cut(s) 190
XceI RCATGY 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.