Rmu_sc0003005.1_g000002

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003005.1
OG0011254
Physical Location & Seq
Reverse (-)
13966 .. 17181
3216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003005.1_g000002.1.cds

Sequence Viewer

Length: 1041 bp
atggaagtctggaaggttgcgaaccaggcaaggatctgttttcatcttcttgaggccggttccggtgacgttgtcggcggttctaggctcctgggatctagtgttgtggaggctaaaagggtgaaaaaacgaagcaagcactgcagaacatgcaaccgatgcgttgaagggttcgatcaccactgccgggtgaaaaaaagaagcaagcactgcagaacatgcaaccgatgcgttgaagggttcgatcaccactgcaggaactacacctcattcattcttctgatggctttcgttttgttacttttgatcatagaaggaggaacagcaattgccatatttgtcaggtgctttaccgataaaaatggaatagagcaggagctgaagaggaaactcttcctagactttccaagagctgttcttgccacaatatcggtcttgctaactctattgacagcttatggttcagcagcaatgggacagcttttcttctttcatatggttctcattaagaagaatcccagaaggctgtccataagaattgatggggatcctcagccctccacgtcaaccaagccacaaggtttccgcgtcagcattaatccatggaggctgataaagttgagcaaagagaaggcattgctcgcagctgagaaagccagagaaagaattttgaaacagaaaccatctgcagagcatgattcattgagaccactaccattagagacgaaatccggaccattgacgatgagcacagatagaaccacagccagtgcaactacagcaggatcaggcttaacacctttaatatcgaaaggggggtggatgccagggtcacccgtcgcaaagttttcaagcccaagaaggaggttttctggctcaccaaccatgttcactggcattgttccctcaccaaagcacaagtacaaaagtaactttgacttgaagttgacagaggtgtccagggagctggagacctatatctcgaggcaggttctgtgttctgttataaagaaggatggcagtgaagcatccccaagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

346

Amino Acids

38.59

Weight (kDa)

10.1

Isoelectric Point (pI)

42.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011254)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01730
fragaria_vesca FvH4_1g26210 FvH4_1g26210
malus_domestica MD09G1290600.v1.1 MD17G1285300.v1.1
prunus_persica Prupe.3G002400_v2.0.a1 Prupe.3G002400_v2.0.a1
pyrus_communis pycom09g19820 pycom17g28110
rosa_chinensis RchiOBHm_Chr3g0485751
rosa_laevigata RLG00000023128
rosa_multiflora Rmu_sc0003005.1_g000002
rosa_roxburghii Rroxscaffold_6G00396350 Rroxscaffold_6G00396370
rosa_rugosa Rorug03G0221100
rosa_samantha Rh3AG270400 Rh3BG305900 Rh3CG304300 Rh3DG300400
rosa_wichuraiana Rw3G024080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1007
AasI GACNNNNNNGTC 1 cut(s) 955
Acc36I ACCTGC 1 cut(s) 979
AccII CGCG 1 cut(s) 588
AccIII TCCGGA 1 cut(s) 731
AciI CCGC 2 cut(s) 78, 586
AclWI GGATC 5 cut(s) 41, 103, 542, 555, 793
AcsI RAATTY 1 cut(s) 666
AcuI CTGAAG 1 cut(s) 401
AfaI GTAC 1 cut(s) 923
AfiI CCNNNNNNNGG 1 cut(s) 187
AgsI TTSAA 5 cut(s) 167, 236, 673, 852, 943
AjiI CACGTC 1 cut(s) 564
AjnI CCWGG 4 cut(s) 24, 90, 826, 959
AluBI AGCT 6 cut(s) 379, 413, 455, 481, 647, 967
AluI AGCT 6 cut(s) 379, 413, 455, 481, 647, 967
Alw21I GWGCWC 1 cut(s) 752
Alw26I GTCTC 3 cut(s) 700, 716, 965
AlwI GGATC 5 cut(s) 41, 103, 542, 555, 793
AlwNI CAGNNNCTG 2 cut(s) 379, 994
Ama87I CYCGRG 1 cut(s) 982
Aor13HI TCCGGA 1 cut(s) 731
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 2 cut(s) 467, 644
ApoI RAATTY 1 cut(s) 666
AseI ATTAAT 1 cut(s) 597
Asp700I GAANNNNTTC 1 cut(s) 392
AspS9I GGNCC 1 cut(s) 734
AsuC2I CCSGG 1 cut(s) 188
AsuHPI GGTGA 8 cut(s) 77, 133, 170, 202, 239, 825, 870, 900
AvaI CYCGRG 1 cut(s) 982
AvaII GGWCC 1 cut(s) 734
BamHI GGATCC 1 cut(s) 547
Bbv12I GWGCWC 1 cut(s) 752
BbvCI CCTCAGC 1 cut(s) 552
BbvI GCAGC 2 cut(s) 479, 656
BccI CCATC 4 cut(s) 277, 536, 691, 1010
BciT130I CCWGG 4 cut(s) 26, 92, 828, 961
BclI TGATCA 1 cut(s) 306
BcnI CCSGG 1 cut(s) 188
BcoDI GTCTC 3 cut(s) 700, 716, 965
BfaI CTAG 3 cut(s) 84, 99, 398
BfmI CTRYAG 5 cut(s) 142, 211, 253, 687, 777
BfuAI ACCTGC 1 cut(s) 979
BisI GCNGC 2 cut(s) 468, 645
BlsI GCNGC 2 cut(s) 469, 646
Bme1390I CCNGG 5 cut(s) 26, 92, 188, 828, 961
Bme18I GGWCC 1 cut(s) 734
BmeT110I CYCGRG 1 cut(s) 982
BmgBI CACGTC 1 cut(s) 564
BmgT120I GGNCC 1 cut(s) 734
BmiI GGNNCC 3 cut(s) 61, 89, 549
BmrFI CCNGG 5 cut(s) 26, 92, 188, 828, 961
BmsI GCATC 4 cut(s) 149, 218, 813, 1037
BpmI CTGGAG 1 cut(s) 989
Bpu10I CCTNAGC 1 cut(s) 552
BpuEI CTTGAG 1 cut(s) 71
BpuMI CCSGG 1 cut(s) 188
BsaBI GATNNNNATC 1 cut(s) 546
BsaI GGTCTC 2 cut(s) 700, 965
BsaJI CCNNGG 4 cut(s) 91, 602, 827, 960
BsaWI WCCGGW 2 cut(s) 62, 731
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse118I RCCGGY 1 cut(s) 56
Bse1I ACTGG 2 cut(s) 768, 898
Bse3DI GCAATG 2 cut(s) 477, 635
Bse8I GATNNNNATC 1 cut(s) 546
BseAI TCCGGA 1 cut(s) 731
BseBI CCWGG 4 cut(s) 26, 92, 828, 961
BseDI CCNNGG 4 cut(s) 91, 602, 827, 960
BseGI GGATG 3 cut(s) 828, 1021, 1028
BseJI GATNNNNATC 1 cut(s) 546
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMI GCAATG 2 cut(s) 477, 635
BseMII CTCAG 2 cut(s) 566, 639
BseNI ACTGG 2 cut(s) 768, 898
BseXI GCAGC 2 cut(s) 479, 656
Bsh1236I CGCG 1 cut(s) 588
BshFI GGCC 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 752
BsiHKCI CYCGRG 1 cut(s) 982
BsiSI CCGG 4 cut(s) 57, 63, 187, 732
BslFI GGGAC 1 cut(s) 489
BslI CCNNNNNNNGG 1 cut(s) 187
BsmAI GTCTC 3 cut(s) 700, 716, 965
BsmBI CGTCTC 1 cut(s) 716
BsmFI GGGAC 1 cut(s) 489
BsnI GGCC 1 cut(s) 56
Bso31I GGTCTC 2 cut(s) 700, 965
BsoBI CYCGRG 1 cut(s) 982
Bsp1286I GDGCHC 1 cut(s) 752
Bsp13I TCCGGA 1 cut(s) 731
Bsp143I GATC 7 cut(s) 33, 95, 175, 244, 306, 547, 785
Bsp19I CCATGG 1 cut(s) 602
BspACI CCGC 2 cut(s) 78, 586
BspANI GGCC 1 cut(s) 56
BspCNI CTCAG 2 cut(s) 565, 640
BspEI TCCGGA 1 cut(s) 731
BspFNI CGCG 1 cut(s) 588
BspLI GGNNCC 3 cut(s) 61, 89, 549
BspMAI CTGCAG 4 cut(s) 146, 215, 257, 691
BspMI ACCTGC 1 cut(s) 979
BspPI GGATC 5 cut(s) 41, 103, 542, 555, 793
BspTNI GGTCTC 2 cut(s) 700, 965
BsrDI GCAATG 2 cut(s) 477, 635
BsrFI RCCGGY 1 cut(s) 56
BsrI ACTGG 2 cut(s) 768, 898
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 4 cut(s) 91, 602, 827, 960
BssMI GATC 7 cut(s) 33, 95, 175, 244, 306, 547, 785
BssT1I CCWWGG 1 cut(s) 602
Bst2UI CCWGG 4 cut(s) 26, 92, 828, 961
Bst6I CTCTTC 2 cut(s) 377, 398
BstAPI GCANNNNNTGC 6 cut(s) 141, 150, 159, 210, 219, 228
BstC8I GCNNGC 3 cut(s) 137, 206, 642
BstDEI CTNAG 2 cut(s) 552, 648
BstDSI CCRYGG 1 cut(s) 602
BstEII GGTNACC 1 cut(s) 831
BstF5I GGATG 3 cut(s) 828, 1021, 1028
BstFNI CGCG 1 cut(s) 588
BstKTI GATC 7 cut(s) 36, 98, 178, 247, 309, 550, 788
BstMAI GTCTC 3 cut(s) 700, 716, 965
BstMBI GATC 7 cut(s) 33, 95, 175, 244, 306, 547, 785
BstNI CCWGG 4 cut(s) 26, 92, 828, 961
BstNSI RCATGY 2 cut(s) 153, 222
BstPI GGTNACC 1 cut(s) 831
BstSCI CCNGG 5 cut(s) 24, 90, 186, 826, 959
BstSFI CTRYAG 5 cut(s) 142, 211, 253, 687, 777
BstUI CGCG 1 cut(s) 588
BstV1I GCAGC 2 cut(s) 479, 656
BstX2I RGATCY 3 cut(s) 33, 95, 547
BstXI CCANNNNNNTGG 1 cut(s) 967
BstYI RGATCY 3 cut(s) 33, 95, 547
BsuRI GGCC 1 cut(s) 56
BtgI CCRYGG 1 cut(s) 602
BtrI CACGTC 1 cut(s) 564
BtsCI GGATG 3 cut(s) 828, 1021, 1028
BtsI GCAGTG 5 cut(s) 139, 181, 208, 250, 1027
BtsIMutI CAGTG 7 cut(s) 139, 181, 208, 250, 775, 891, 1027
BveI ACCTGC 1 cut(s) 979
Cac8I GCNNGC 3 cut(s) 137, 206, 642
CaiI CAGNNNCTG 2 cut(s) 379, 994
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 1 cut(s) 734
CseI GACGC 1 cut(s) 577
Csp6I GTAC 1 cut(s) 922
CviAII CATG 5 cut(s) 150, 219, 603, 695, 886
CviQI GTAC 1 cut(s) 922
DdeI CTNAG 2 cut(s) 552, 648
DpnI GATC 7 cut(s) 35, 97, 177, 246, 308, 549, 787
DpnII GATC 7 cut(s) 33, 95, 175, 244, 306, 547, 785
DrdI GACNNNNNNGTC 1 cut(s) 955
DseDI GACNNNNNNGTC 1 cut(s) 955
Eam1104I CTCTTC 2 cut(s) 377, 398
EarI CTCTTC 2 cut(s) 377, 398
Eco130I CCWWGG 1 cut(s) 602
Eco31I GGTCTC 2 cut(s) 700, 965
Eco47I GGWCC 1 cut(s) 734
Eco57I CTGAAG 1 cut(s) 401
Eco88I CYCGRG 1 cut(s) 982
Eco91I GGTNACC 1 cut(s) 831
EcoO65I GGTNACC 1 cut(s) 831
EcoRII CCWGG 4 cut(s) 24, 90, 826, 959
EcoT14I CCWWGG 1 cut(s) 602
ErhI CCWWGG 1 cut(s) 602
Esp3I CGTCTC 1 cut(s) 716
FaeI CATG 5 cut(s) 153, 222, 606, 698, 889
FaqI GGGAC 1 cut(s) 489
FatI CATG 5 cut(s) 149, 218, 602, 694, 885
FauNDI CATATG 1 cut(s) 495
FbaI TGATCA 1 cut(s) 306
Fnu4HI GCNGC 2 cut(s) 468, 645
FokI GGATG 3 cut(s) 835, 1015, 1028
Fsp4HI GCNGC 2 cut(s) 468, 645
FspBI CTAG 3 cut(s) 84, 99, 398
GluI GCNGC 2 cut(s) 468, 645
GsuI CTGGAG 1 cut(s) 989
HaeIII GGCC 1 cut(s) 56
HapII CCGG 4 cut(s) 57, 63, 187, 732
HgaI GACGC 1 cut(s) 577
Hin1II CATG 5 cut(s) 153, 222, 606, 698, 889
HincII GTYRAC 2 cut(s) 567, 948
HindII GTYRAC 2 cut(s) 567, 948
HinfI GANTC 2 cut(s) 514, 698
HpaII CCGG 4 cut(s) 57, 63, 187, 732
HphI GGTGA 8 cut(s) 77, 133, 170, 202, 239, 825, 870, 900
Hpy166II GTNNAC 3 cut(s) 567, 891, 948
Hpy188I TCNGA 1 cut(s) 282
Hpy188III TCNNGA 4 cut(s) 10, 50, 732, 982
Hpy8I GTNNAC 3 cut(s) 567, 891, 948
Hpy99I CGWCG 1 cut(s) 842
HpyAV CCTTC 8 cut(s) 7, 161, 230, 308, 516, 625, 855, 1006
HpyCH4IV ACGT 2 cut(s) 69, 563
HpyCH4V TGCA 7 cut(s) 144, 153, 213, 222, 255, 689, 773
HpyF3I CTNAG 2 cut(s) 552, 648
HpySE526I ACGT 2 cut(s) 69, 563
Hsp92II CATG 5 cut(s) 153, 222, 606, 698, 889
Kpn2I TCCGGA 1 cut(s) 731
Ksp22I TGATCA 1 cut(s) 306
Kzo9I GATC 7 cut(s) 33, 95, 175, 244, 306, 547, 785
LmnI GCTCC 3 cut(s) 93, 376, 964
Lsp1109I GCAGC 2 cut(s) 479, 656
LweI GCATC 4 cut(s) 149, 218, 813, 1037
MaeI CTAG 3 cut(s) 84, 99, 398
MaeII ACGT 2 cut(s) 69, 563
MaeIII GTNAC 4 cut(s) 65, 297, 831, 929
MalI GATC 7 cut(s) 35, 97, 177, 246, 308, 549, 787
MboI GATC 7 cut(s) 33, 95, 175, 244, 306, 547, 785
MboII GAAGA 6 cut(s) 38, 269, 385, 394, 478, 523
MfeI CAATTG 1 cut(s) 327
MflI RGATCY 3 cut(s) 33, 95, 547
MhlI GDGCHC 1 cut(s) 752
MluCI AATT 3 cut(s) 327, 537, 666
MroI TCCGGA 1 cut(s) 731
MroXI GAANNNNTTC 1 cut(s) 392
MseI TTAA 4 cut(s) 507, 597, 794, 803
MspA1I CMGCKG 1 cut(s) 647
MspI CCGG 4 cut(s) 57, 63, 187, 732
MspR9I CCNGG 5 cut(s) 26, 92, 188, 828, 961
MunI CAATTG 1 cut(s) 327
MvaI CCWGG 4 cut(s) 26, 92, 828, 961
MvnI CGCG 1 cut(s) 588
NciI CCSGG 1 cut(s) 188
NcoI CCATGG 1 cut(s) 602
NdeI CATATG 1 cut(s) 495
NdeII GATC 7 cut(s) 33, 95, 175, 244, 306, 547, 785
NlaIII CATG 5 cut(s) 153, 222, 606, 698, 889
NlaIV GGNNCC 3 cut(s) 61, 89, 549
NmuCI GTSAC 2 cut(s) 65, 831
NspI RCATGY 2 cut(s) 153, 222
PaeR7I CTCGAG 1 cut(s) 982
PdmI GAANNNNTTC 1 cut(s) 392
PfeI GAWTC 2 cut(s) 514, 698
PflFI GACNNNGTC 1 cut(s) 71
PkrI GCNGC 2 cut(s) 469, 646
PshBI ATTAAT 1 cut(s) 597
PsiI TTATAA 1 cut(s) 1007
Psp6I CCWGG 4 cut(s) 24, 90, 826, 959
PspEI GGTNACC 1 cut(s) 831
PspGI CCWGG 4 cut(s) 24, 90, 826, 959
PspN4I GGNNCC 3 cut(s) 61, 89, 549
PspPI GGNCC 1 cut(s) 734
PstI CTGCAG 4 cut(s) 146, 215, 257, 691
PstNI CAGNNNCTG 2 cut(s) 379, 994
PsuI RGATCY 3 cut(s) 33, 95, 547
PsyI GACNNNGTC 1 cut(s) 71
PvuII CAGCTG 1 cut(s) 647
RsaI GTAC 1 cut(s) 923
RsaNI GTAC 1 cut(s) 922
SaqAI TTAA 4 cut(s) 507, 597, 794, 803
SatI GCNGC 2 cut(s) 468, 645
Sau3AI GATC 7 cut(s) 33, 95, 175, 244, 306, 547, 785
Sau96I GGNCC 1 cut(s) 734
ScrFI CCNGG 5 cut(s) 26, 92, 188, 828, 961
SduI GDGCHC 1 cut(s) 752
SfaNI GCATC 4 cut(s) 149, 218, 813, 1037
SfcI CTRYAG 5 cut(s) 142, 211, 253, 687, 777
Sfr274I CTCGAG 1 cut(s) 982
SinI GGWCC 1 cut(s) 734
SlaI CTCGAG 1 cut(s) 982
SmlI CTYRAG 2 cut(s) 50, 982
SmoI CTYRAG 2 cut(s) 50, 982
Sse9I AATT 3 cut(s) 327, 537, 666
SsiI CCGC 2 cut(s) 78, 586
SspMI CTAG 3 cut(s) 84, 99, 398
StyD4I CCNGG 5 cut(s) 24, 90, 186, 826, 959
StyI CCWWGG 1 cut(s) 602
TaiI ACGT 2 cut(s) 72, 566
TaqI TCGA 4 cut(s) 174, 243, 809, 983
TaqII GACCGA 1 cut(s) 421
TasI AATT 3 cut(s) 327, 537, 666
TatI WGTACW 1 cut(s) 921
TfiI GAWTC 2 cut(s) 514, 698
Tru1I TTAA 4 cut(s) 507, 597, 794, 803
Tru9I TTAA 4 cut(s) 507, 597, 794, 803
TscAI CASTG 7 cut(s) 146, 188, 215, 257, 775, 898, 1027
TseFI GTSAC 2 cut(s) 65, 831
TseI GCWGC 2 cut(s) 467, 644
Tsp45I GTSAC 2 cut(s) 65, 831
TspDTI ATGAA 4 cut(s) 32, 262, 482, 690
TspRI CASTG 7 cut(s) 146, 188, 215, 257, 775, 898, 1027
Tth111I GACNNNGTC 1 cut(s) 71
VpaK11BI GGWCC 1 cut(s) 734
VspI ATTAAT 1 cut(s) 597
XapI RAATTY 1 cut(s) 666
XceI RCATGY 2 cut(s) 153, 222
XhoI CTCGAG 1 cut(s) 982
XmnI GAANNNNTTC 1 cut(s) 392
XspI CTAG 3 cut(s) 84, 99, 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.