Rh3AG270400

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0011254
Physical Location & Seq
Forward (+)
30827229 .. 30828009
781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG270400.1

Sequence Viewer

Length: 681 bp
ATGAAAGAGGAGATCAACCAGTCTATGGAAATGGATCCATTTAATGATGATTCAGATTTCTCATCAGATGAGAGCATTAGTGATTTTGATTCACCCGAAAAGCCGTCATGTGTATCAAGGTTTATATGCAGAGGACATGATGCAGGAATTCAGAATCCCAGAAGGCTGTCCATAAGAATTGATGGAGATCCTCAGCCCTCCATGTCAACCAAGCCACAAGGTTTCCGAGTCAGCATTAATCCATGGAGGCTGATAAAGTTGAGCAAAGAGAAGGCATTGCTCGCAGCTGAGAAAGCCAGAGAAAGAATTTTGAAACAGAAGCCATCTGCAGAGCATGATTCATTGAGACCACTACCATTGGAGACGAAATCCGGACCATTGACGATGAGCACAGATAGAACCACAGCCACTGCAACTACAGCAGGATCAGGTTTAACACCTTTAATATCGAAAGGGGGGTGGATGCCAGGGTCACCCGTCGCAAAGTTTTCAAGCCCAAGAAGGAGGTTTTCTGGCTCACCAACTATGTTCACTGGCATTGTTCCCTCACCAAAGCACAAGTACAAAAGTAACTTTGACTTGAAGTTGACAGAGGTGTCCAGGGAGCTGGAGACCTATATCTCAAGGCAGGTTCTGTGTTCTGTTATAAAGAAGGATGCCAGTGAAGCATCCCCAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

226

Amino Acids

25.06

Weight (kDa)

9.38

Isoelectric Point (pI)

59.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011254)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01730
fragaria_vesca FvH4_1g26210 FvH4_1g26210
malus_domestica MD09G1290600.v1.1 MD17G1285300.v1.1
prunus_persica Prupe.3G002400_v2.0.a1 Prupe.3G002400_v2.0.a1
pyrus_communis pycom09g19820 pycom17g28110
rosa_chinensis RchiOBHm_Chr3g0485751
rosa_laevigata RLG00000023128
rosa_multiflora Rmu_sc0003005.1_g000002
rosa_roxburghii Rroxscaffold_6G00396350 Rroxscaffold_6G00396370
rosa_rugosa Rorug03G0221100
rosa_samantha Rh3AG270400 Rh3BG305900 Rh3CG304300 Rh3DG300400
rosa_wichuraiana Rw3G024080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 647
AasI GACNNNNNNGTC 1 cut(s) 595
Acc36I ACCTGC 1 cut(s) 619
AccB7I CCANNNNNTGG 1 cut(s) 25
AccIII TCCGGA 1 cut(s) 371
AclWI GGATC 4 cut(s) 29, 42, 182, 433
AcsI RAATTY 2 cut(s) 147, 306
AfaI GTAC 1 cut(s) 563
AfiI CCNNNNNNNGG 1 cut(s) 25
AgsI TTSAA 3 cut(s) 313, 492, 583
AjnI CCWGG 2 cut(s) 466, 599
AluBI AGCT 2 cut(s) 287, 607
AluI AGCT 2 cut(s) 287, 607
Alw21I GWGCWC 1 cut(s) 392
Alw26I GTCTC 3 cut(s) 340, 356, 605
AlwI GGATC 4 cut(s) 29, 42, 182, 433
AlwNI CAGNNNCTG 2 cut(s) 410, 634
Aor13HI TCCGGA 1 cut(s) 371
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 2 cut(s) 147, 306
AseI ATTAAT 1 cut(s) 237
AspS9I GGNCC 1 cut(s) 374
AsuHPI GGTGA 4 cut(s) 84, 465, 510, 540
AvaII GGWCC 1 cut(s) 374
BamHI GGATCC 1 cut(s) 34
Bbv12I GWGCWC 1 cut(s) 392
BbvCI CCTCAGC 1 cut(s) 192
BbvI GCAGC 1 cut(s) 296
BccI CCATC 2 cut(s) 176, 331
BceAI ACGGC 1 cut(s) 88
BciT130I CCWGG 2 cut(s) 468, 601
BcoDI GTCTC 3 cut(s) 340, 356, 605
BfmI CTRYAG 2 cut(s) 327, 417
BfuAI ACCTGC 1 cut(s) 619
BisI GCNGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 286
Bme1390I CCNGG 2 cut(s) 468, 601
Bme18I GGWCC 1 cut(s) 374
BmgT120I GGNCC 1 cut(s) 374
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 2 cut(s) 468, 601
BmsI GCATC 4 cut(s) 130, 453, 646, 677
BpmI CTGGAG 1 cut(s) 629
Bpu10I CCTNAGC 1 cut(s) 192
BpuEI CTTGAG 1 cut(s) 607
BsaBI GATNNNNATC 1 cut(s) 186
BsaI GGTCTC 2 cut(s) 340, 605
BsaJI CCNNGG 3 cut(s) 242, 467, 600
BsaWI WCCGGW 1 cut(s) 371
Bsc4I CCNNNNNNNGG 1 cut(s) 25
Bse1I ACTGG 3 cut(s) 19, 538, 660
Bse3DI GCAATG 1 cut(s) 275
Bse8I GATNNNNATC 1 cut(s) 186
BseAI TCCGGA 1 cut(s) 371
BseBI CCWGG 2 cut(s) 468, 601
BseDI CCNNGG 3 cut(s) 242, 467, 600
BseGI GGATG 3 cut(s) 468, 661, 668
BseJI GATNNNNATC 1 cut(s) 186
BseLI CCNNNNNNNGG 1 cut(s) 25
BseMI GCAATG 1 cut(s) 275
BseMII CTCAG 2 cut(s) 206, 279
BseNI ACTGG 3 cut(s) 19, 538, 660
BseRI GAGGAG 1 cut(s) 23
BseXI GCAGC 1 cut(s) 296
BsiHKAI GWGCWC 1 cut(s) 392
BsiSI CCGG 1 cut(s) 372
BslI CCNNNNNNNGG 1 cut(s) 25
BsmAI GTCTC 3 cut(s) 340, 356, 605
BsmBI CGTCTC 1 cut(s) 356
Bso31I GGTCTC 2 cut(s) 340, 605
Bsp1286I GDGCHC 1 cut(s) 392
Bsp13I TCCGGA 1 cut(s) 371
Bsp143I GATC 4 cut(s) 12, 34, 187, 425
Bsp19I CCATGG 1 cut(s) 242
BspCNI CTCAG 2 cut(s) 205, 280
BspEI TCCGGA 1 cut(s) 371
BspLI GGNNCC 1 cut(s) 36
BspMAI CTGCAG 1 cut(s) 331
BspMI ACCTGC 1 cut(s) 619
BspPI GGATC 4 cut(s) 29, 42, 182, 433
BspTNI GGTCTC 2 cut(s) 340, 605
BsrDI GCAATG 1 cut(s) 275
BsrI ACTGG 3 cut(s) 19, 538, 660
BssECI CCNNGG 3 cut(s) 242, 467, 600
BssMI GATC 4 cut(s) 12, 34, 187, 425
BssT1I CCWWGG 1 cut(s) 242
Bst2UI CCWGG 2 cut(s) 468, 601
BstC8I GCNNGC 1 cut(s) 282
BstDEI CTNAG 2 cut(s) 192, 288
BstDSI CCRYGG 1 cut(s) 242
BstEII GGTNACC 1 cut(s) 471
BstF5I GGATG 3 cut(s) 468, 661, 668
BstKTI GATC 4 cut(s) 15, 37, 190, 428
BstMAI GTCTC 3 cut(s) 340, 356, 605
BstMBI GATC 4 cut(s) 12, 34, 187, 425
BstMWI GCNNNNNNNGC 4 cut(s) 281, 293, 419, 665
BstNI CCWGG 2 cut(s) 468, 601
BstPI GGTNACC 1 cut(s) 471
BstSCI CCNGG 2 cut(s) 466, 599
BstSFI CTRYAG 2 cut(s) 327, 417
BstV1I GCAGC 1 cut(s) 296
BstX2I RGATCY 2 cut(s) 34, 187
BstXI CCANNNNNNTGG 1 cut(s) 607
BstYI RGATCY 2 cut(s) 34, 187
BtgI CCRYGG 1 cut(s) 242
BtsCI GGATG 3 cut(s) 468, 661, 668
BtsI GCAGTG 1 cut(s) 408
BtsIMutI CAGTG 3 cut(s) 408, 531, 667
BveI ACCTGC 1 cut(s) 619
Cac8I GCNNGC 1 cut(s) 282
CaiI CAGNNNCTG 2 cut(s) 410, 634
Cfr13I GGNCC 1 cut(s) 374
Csp6I GTAC 1 cut(s) 562
CspCI CAANNNNNGTGG 2 cut(s) 339, 374
CviAII CATG 5 cut(s) 108, 137, 202, 243, 335
CviQI GTAC 1 cut(s) 562
DdeI CTNAG 2 cut(s) 192, 288
DpnI GATC 4 cut(s) 14, 36, 189, 427
DpnII GATC 4 cut(s) 12, 34, 187, 425
DrdI GACNNNNNNGTC 1 cut(s) 595
DseDI GACNNNNNNGTC 1 cut(s) 595
Eco130I CCWWGG 1 cut(s) 242
Eco31I GGTCTC 2 cut(s) 340, 605
Eco47I GGWCC 1 cut(s) 374
Eco91I GGTNACC 1 cut(s) 471
EcoO65I GGTNACC 1 cut(s) 471
EcoRI GAATTC 1 cut(s) 147
EcoRII CCWGG 2 cut(s) 466, 599
EcoT14I CCWWGG 1 cut(s) 242
ErhI CCWWGG 1 cut(s) 242
Esp3I CGTCTC 1 cut(s) 356
FaeI CATG 5 cut(s) 111, 140, 205, 246, 338
FatI CATG 5 cut(s) 107, 136, 201, 242, 334
Fnu4HI GCNGC 1 cut(s) 285
FokI GGATG 3 cut(s) 475, 655, 668
Fsp4HI GCNGC 1 cut(s) 285
GluI GCNGC 1 cut(s) 285
GsuI CTGGAG 1 cut(s) 629
HapII CCGG 1 cut(s) 372
Hin1II CATG 5 cut(s) 111, 140, 205, 246, 338
HincII GTYRAC 2 cut(s) 207, 588
HindII GTYRAC 2 cut(s) 207, 588
HinfI GANTC 5 cut(s) 50, 89, 154, 228, 338
HpaII CCGG 1 cut(s) 372
HphI GGTGA 4 cut(s) 84, 465, 510, 540
Hpy166II GTNNAC 3 cut(s) 207, 531, 588
Hpy188I TCNGA 4 cut(s) 55, 67, 153, 227
Hpy188III TCNNGA 1 cut(s) 372
Hpy8I GTNNAC 3 cut(s) 207, 531, 588
Hpy99I CGWCG 1 cut(s) 482
HpyAV CCTTC 4 cut(s) 156, 265, 495, 646
HpyCH4V TGCA 4 cut(s) 129, 143, 329, 413
HpyF10VI GCNNNNNNNGC 4 cut(s) 281, 293, 419, 665
HpyF3I CTNAG 2 cut(s) 192, 288
Hsp92II CATG 5 cut(s) 111, 140, 205, 246, 338
Kpn2I TCCGGA 1 cut(s) 371
Kzo9I GATC 4 cut(s) 12, 34, 187, 425
LmnI GCTCC 1 cut(s) 604
Lsp1109I GCAGC 1 cut(s) 296
LweI GCATC 4 cut(s) 130, 453, 646, 677
MaeIII GTNAC 2 cut(s) 471, 569
MalI GATC 4 cut(s) 14, 36, 189, 427
MboI GATC 4 cut(s) 12, 34, 187, 425
MflI RGATCY 2 cut(s) 34, 187
MhlI GDGCHC 1 cut(s) 392
MluCI AATT 3 cut(s) 147, 177, 306
MlyI GAGTC 1 cut(s) 237
MnlI CCTC 7 cut(s) 125, 201, 208, 240, 498, 556, 586
MroI TCCGGA 1 cut(s) 371
MseI TTAA 4 cut(s) 42, 237, 434, 443
MspA1I CMGCKG 1 cut(s) 287
MspI CCGG 1 cut(s) 372
MspR9I CCNGG 2 cut(s) 468, 601
MvaI CCWGG 2 cut(s) 468, 601
MwoI GCNNNNNNNGC 4 cut(s) 281, 293, 419, 665
NcoI CCATGG 1 cut(s) 242
NdeII GATC 4 cut(s) 12, 34, 187, 425
NlaIII CATG 5 cut(s) 111, 140, 205, 246, 338
NlaIV GGNNCC 1 cut(s) 36
NmuCI GTSAC 1 cut(s) 471
PfeI GAWTC 4 cut(s) 50, 89, 154, 338
PflMI CCANNNNNTGG 1 cut(s) 25
PkrI GCNGC 1 cut(s) 286
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
PshBI ATTAAT 1 cut(s) 237
PsiI TTATAA 1 cut(s) 647
Psp6I CCWGG 2 cut(s) 466, 599
PspEI GGTNACC 1 cut(s) 471
PspGI CCWGG 2 cut(s) 466, 599
PspN4I GGNNCC 1 cut(s) 36
PspPI GGNCC 1 cut(s) 374
PstI CTGCAG 1 cut(s) 331
PstNI CAGNNNCTG 2 cut(s) 410, 634
PsuI RGATCY 2 cut(s) 34, 187
PvuII CAGCTG 1 cut(s) 287
RsaI GTAC 1 cut(s) 563
RsaNI GTAC 1 cut(s) 562
SaqAI TTAA 4 cut(s) 42, 237, 434, 443
SatI GCNGC 1 cut(s) 285
Sau3AI GATC 4 cut(s) 12, 34, 187, 425
Sau96I GGNCC 1 cut(s) 374
SchI GAGTC 1 cut(s) 237
ScrFI CCNGG 2 cut(s) 468, 601
SduI GDGCHC 1 cut(s) 392
SfaNI GCATC 4 cut(s) 130, 453, 646, 677
SfcI CTRYAG 2 cut(s) 327, 417
SinI GGWCC 1 cut(s) 374
SmlI CTYRAG 1 cut(s) 622
SmoI CTYRAG 1 cut(s) 622
Sse9I AATT 3 cut(s) 147, 177, 306
StyD4I CCNGG 2 cut(s) 466, 599
StyI CCWWGG 1 cut(s) 242
TaqI TCGA 1 cut(s) 449
TasI AATT 3 cut(s) 147, 177, 306
TatI WGTACW 1 cut(s) 561
TfiI GAWTC 4 cut(s) 50, 89, 154, 338
Tru1I TTAA 4 cut(s) 42, 237, 434, 443
Tru9I TTAA 4 cut(s) 42, 237, 434, 443
TscAI CASTG 3 cut(s) 415, 538, 667
TseFI GTSAC 1 cut(s) 471
TseI GCWGC 1 cut(s) 284
Tsp45I GTSAC 1 cut(s) 471
TspDTI ATGAA 2 cut(s) 17, 330
TspRI CASTG 3 cut(s) 415, 538, 667
Van91I CCANNNNNTGG 1 cut(s) 25
VpaK11BI GGWCC 1 cut(s) 374
VspI ATTAAT 1 cut(s) 237
XapI RAATTY 2 cut(s) 147, 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.