pycom09g19820

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0011254
Physical Location & Seq
Forward (+)
20687389 .. 20690172
2784 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g19820.3

Sequence Viewer

Length: 1179 bp
ATGCAAGGGCAGACTGATCCACCATCCATTCCTCTTGTTGACCTGTTCTCATCTGGGGAGTTTTCCGAGGCCTATCAGGTATCAGGGGGCAGCGGATGTCTTGTCCAGTCAGATGCCATGGCTGTGTTGGAATTGCAGTTTACAGTTCTCTTGTGGTGGTCTTCTACACATTCCTTGGATTTTTCCTCGGAAATAGAATCCTCGAAATCACAGTCCGTCTTTTCCTTTGTGGCTGTTTCGGTCATGTTTCTCCTCATAAGGTGCACAGCCACTGACCCAACTGACAGAACCAGCCTTAAGAAGAAGAACAAGAACAAACCTCAAGGTGGCAAAGGCCTTCCAAAGCTCAACTACGGCTTCCTTCTCGGCCTCAGGACTTTTATAAGGAGAAGGTATCTCAATCCATGGAAGACCATCGCTCAGTTGGATCCTTTGCTCCCGTTTCCTTTTGTCCTCATAAAAGAAGAAGCTGTCTCTCCTAATTTAAGGGACGGCATCTCTTTCTGTGTGCTCTGCGACTTTGAGGTGAAAAAACACGGTAAGCACTGCAGACCTGCAACCGTTGTGTTGACACCTTTGACCACTACTTGGTTAAACAACTGCATTGGAAAAAAAGAACTACACCACATTCATTCTCCTTATGATTTTCCTTTTTTTTGCATCTTCAGACTTCAGAAGGCATGCAAGTCTATTTGCAGCATGACTTATGGGATGAATTGCTATTCAAAGTTTCAGAACAACCAAAGGCTGTCCATAAGAACTGATAGTGATCCTCATGACCCCTGGAGGCTGACGAAGAGTAAAGATAAAGCATCGATAGCAGCAGAGAAAGCCAGAGAACGGATTGTGAAACAGAAGCGGCCTACAGAAGAGGATTCATTGAAACCATTACTGTTAGAGACCAAATGTGGACCACTGATGATGAGCACAGATAAAGGCACGACCACTACTGTAGGATCAGGCTTAACACTTCTCATATCCAAAGGGTGGATGCCAGGGTCATCCGGCGGAAAGTTTTCAAGCCCAAGAAGGTGGGTTCCTAGTTCACTGACTATGTTCTCTGGCATTGTGCCCTCACCAAAGCACAAGTACCGAAACAACTTTGACTTGAAATTCATGGAGATGTCGAGGAAGCTGGAGACCTACATGTCAAGGCAGGTTCTATGTTCTGTTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

393

Amino Acids

44.16

Weight (kDa)

9.5

Isoelectric Point (pI)

52.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011254)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01730
fragaria_vesca FvH4_1g26210 FvH4_1g26210
malus_domestica MD09G1290600.v1.1 MD17G1285300.v1.1
prunus_persica Prupe.3G002400_v2.0.a1 Prupe.3G002400_v2.0.a1
pyrus_communis pycom09g19820 pycom17g28110
rosa_chinensis RchiOBHm_Chr3g0485751
rosa_laevigata RLG00000023128
rosa_multiflora Rmu_sc0003005.1_g000002
rosa_roxburghii Rroxscaffold_6G00396350 Rroxscaffold_6G00396370
rosa_rugosa Rorug03G0221100
rosa_samantha Rh3AG270400 Rh3BG305900 Rh3CG304300 Rh3DG300400
rosa_wichuraiana Rw3G024080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 383
AasI GACNNNNNNGTC 1 cut(s) 1147
Acc36I ACCTGC 2 cut(s) 562, 1147
AccB7I CCANNNNNTGG 2 cut(s) 588, 987
AciI CCGC 3 cut(s) 93, 859, 1008
AclWI GGATC 5 cut(s) 11, 422, 435, 764, 964
AcsI RAATTY 1 cut(s) 1112
AcuI CTGAAG 2 cut(s) 649, 656
AfaI GTAC 1 cut(s) 1091
AfiI CCNNNNNNNGG 4 cut(s) 326, 588, 840, 987
AflII CTTAAG 1 cut(s) 296
AflIII ACRYGT 1 cut(s) 1146
AgsI TTSAA 4 cut(s) 726, 883, 1020, 1111
AjnI CCWGG 2 cut(s) 782, 994
AluBI AGCT 3 cut(s) 346, 470, 1135
AluI AGCT 3 cut(s) 346, 470, 1135
Alw21I GWGCWC 3 cut(s) 266, 513, 929
Alw26I GTCTC 3 cut(s) 478, 893, 1133
Alw44I GTGCAC 1 cut(s) 262
AlwI GGATC 5 cut(s) 11, 422, 435, 764, 964
AlwNI CAGNNNCTG 1 cut(s) 272
AoxI GGCC 4 cut(s) 69, 334, 367, 860
ApaLI GTGCAC 1 cut(s) 262
ApeKI GCWGC 3 cut(s) 90, 696, 821
ApoI RAATTY 1 cut(s) 1112
ArsI GACNNNNNNTTYG 2 cut(s) 197, 229
Asp700I GAANNNNTTC 1 cut(s) 1015
AspS9I GGNCC 1 cut(s) 911
AsuHPI GGTGA 2 cut(s) 538, 1068
AvaII GGWCC 1 cut(s) 911
AxyI CCTNAGG 1 cut(s) 371
BaeGI GKGCMC 2 cut(s) 266, 1074
BamHI GGATCC 1 cut(s) 427
BbsI GAAGAC 2 cut(s) 153, 416
Bbv12I GWGCWC 3 cut(s) 266, 513, 929
BbvI GCAGC 3 cut(s) 102, 708, 833
BccI CCATC 2 cut(s) 31, 422
BceAI ACGGC 2 cut(s) 370, 508
BciT130I CCWGG 2 cut(s) 784, 996
BcoDI GTCTC 3 cut(s) 478, 893, 1133
BfaI CTAG 1 cut(s) 1041
BfmI CTRYAG 3 cut(s) 547, 864, 951
BfrI CTTAAG 1 cut(s) 296
BfuAI ACCTGC 2 cut(s) 562, 1147
BisI GCNGC 4 cut(s) 91, 697, 822, 860
BlsI GCNGC 4 cut(s) 92, 698, 823, 861
Bme1390I CCNGG 2 cut(s) 784, 996
Bme18I GGWCC 1 cut(s) 911
BmgT120I GGNCC 1 cut(s) 911
BmiI GGNNCC 2 cut(s) 429, 1038
BmrFI CCNGG 2 cut(s) 784, 996
BmsI GCATC 5 cut(s) 103, 504, 669, 821, 981
BpiI GAAGAC 2 cut(s) 153, 416
BpmI CTGGAG 2 cut(s) 805, 1157
BpuEI CTTGAG 1 cut(s) 306
Bsa29I ATCGAT 1 cut(s) 815
BsaBI GATNNNNATC 1 cut(s) 768
BsaI GGTCTC 2 cut(s) 893, 1133
BsaJI CCNNGG 7 cut(s) 66, 117, 174, 186, 404, 782, 995
Bsc4I CCNNNNNNNGG 4 cut(s) 326, 588, 840, 987
Bse1I ACTGG 1 cut(s) 106
Bse21I CCTNAGG 1 cut(s) 371
Bse8I GATNNNNATC 1 cut(s) 768
BseBI CCWGG 2 cut(s) 784, 996
BseCI ATCGAT 1 cut(s) 815
BseDI CCNNGG 7 cut(s) 66, 117, 174, 186, 404, 782, 995
BseGI GGATG 5 cut(s) 23, 101, 717, 996, 1001
BseJI GATNNNNATC 1 cut(s) 768
BseLI CCNNNNNNNGG 4 cut(s) 326, 588, 840, 987
BseMII CTCAG 2 cut(s) 385, 434
BseNI ACTGG 1 cut(s) 106
BseRI GAGGAG 1 cut(s) 242
BseSI GKGCMC 2 cut(s) 266, 1074
BseXI GCAGC 3 cut(s) 102, 708, 833
BshFI GGCC 4 cut(s) 71, 336, 369, 862
BshVI ATCGAT 1 cut(s) 815
BsiHKAI GWGCWC 3 cut(s) 266, 513, 929
BsiSI CCGG 1 cut(s) 1005
BslFI GGGAC 1 cut(s) 503
BslI CCNNNNNNNGG 4 cut(s) 326, 588, 840, 987
BsmAI GTCTC 3 cut(s) 478, 893, 1133
BsmFI GGGAC 1 cut(s) 503
BsnI GGCC 4 cut(s) 71, 336, 369, 862
Bso31I GGTCTC 2 cut(s) 893, 1133
Bsp1286I GDGCHC 4 cut(s) 266, 513, 929, 1074
Bsp143I GATC 4 cut(s) 16, 427, 769, 956
Bsp19I CCATGG 2 cut(s) 117, 404
BspACI CCGC 3 cut(s) 93, 859, 1008
BspANI GGCC 4 cut(s) 71, 336, 369, 862
BspCNI CTCAG 2 cut(s) 384, 433
BspDI ATCGAT 1 cut(s) 815
BspHI TCATGA 1 cut(s) 775
BspLI GGNNCC 2 cut(s) 429, 1038
BspMAI CTGCAG 1 cut(s) 551
BspMI ACCTGC 2 cut(s) 562, 1147
BspPI GGATC 5 cut(s) 11, 422, 435, 764, 964
BspTI CTTAAG 1 cut(s) 296
BspTNI GGTCTC 2 cut(s) 893, 1133
BsrI ACTGG 1 cut(s) 106
BssECI CCNNGG 7 cut(s) 66, 117, 174, 186, 404, 782, 995
BssMI GATC 4 cut(s) 16, 427, 769, 956
BssT1I CCWWGG 3 cut(s) 117, 174, 404
Bst2UI CCWGG 2 cut(s) 784, 996
Bst4CI ACNGT 6 cut(s) 145, 213, 539, 562, 894, 952
Bst6I CTCTTC 2 cut(s) 791, 864
BstAFI CTTAAG 1 cut(s) 296
BstC8I GCNNGC 1 cut(s) 682
BstDEI CTNAG 2 cut(s) 371, 420
BstDSI CCRYGG 2 cut(s) 117, 404
BstF5I GGATG 5 cut(s) 23, 101, 717, 996, 1001
BstKTI GATC 4 cut(s) 19, 430, 772, 959
BstMAI GTCTC 3 cut(s) 478, 893, 1133
BstMBI GATC 4 cut(s) 16, 427, 769, 956
BstMWI GCNNNNNNNGC 2 cut(s) 818, 830
BstNI CCWGG 2 cut(s) 784, 996
BstNSI RCATGY 2 cut(s) 684, 1150
BstSCI CCNGG 2 cut(s) 782, 994
BstSFI CTRYAG 3 cut(s) 547, 864, 951
BstSLI GKGCMC 2 cut(s) 266, 1074
BstV1I GCAGC 3 cut(s) 102, 708, 833
BstV2I GAAGAC 2 cut(s) 153, 416
BstX2I RGATCY 1 cut(s) 427
BstXI CCANNNNNNTGG 1 cut(s) 1032
BstYI RGATCY 1 cut(s) 427
Bsu15I ATCGAT 1 cut(s) 815
Bsu36I CCTNAGG 1 cut(s) 371
BsuRI GGCC 4 cut(s) 71, 336, 369, 862
BsuTUI ATCGAT 1 cut(s) 815
BtgI CCRYGG 2 cut(s) 117, 404
BtgZI GCGATG 1 cut(s) 400
BtsCI GGATG 5 cut(s) 23, 101, 717, 996, 1001
BtsI GCAGTG 1 cut(s) 544
BtsIMutI CAGTG 4 cut(s) 270, 544, 914, 1046
BveI ACCTGC 2 cut(s) 562, 1147
Cac8I GCNNGC 1 cut(s) 682
CaiI CAGNNNCTG 1 cut(s) 272
CciI TCATGA 1 cut(s) 775
Cfr13I GGNCC 1 cut(s) 911
ClaI ATCGAT 1 cut(s) 815
Csp6I GTAC 1 cut(s) 1090
CviAII CATG 8 cut(s) 118, 244, 405, 681, 700, 776, 1117, 1147
CviQI GTAC 1 cut(s) 1090
DdeI CTNAG 2 cut(s) 371, 420
DpnI GATC 4 cut(s) 18, 429, 771, 958
DpnII GATC 4 cut(s) 16, 427, 769, 956
DrdI GACNNNNNNGTC 1 cut(s) 1147
DseDI GACNNNNNNGTC 1 cut(s) 1147
Eam1104I CTCTTC 2 cut(s) 791, 864
EarI CTCTTC 2 cut(s) 791, 864
EciI GGCGGA 1 cut(s) 1023
Eco130I CCWWGG 3 cut(s) 117, 174, 404
Eco147I AGGCCT 2 cut(s) 71, 336
Eco31I GGTCTC 2 cut(s) 893, 1133
Eco47I GGWCC 1 cut(s) 911
Eco57I CTGAAG 2 cut(s) 649, 656
Eco81I CCTNAGG 1 cut(s) 371
EcoRII CCWGG 2 cut(s) 782, 994
EcoT14I CCWWGG 3 cut(s) 117, 174, 404
ErhI CCWWGG 3 cut(s) 117, 174, 404
FaeI CATG 8 cut(s) 121, 247, 408, 684, 703, 779, 1120, 1150
FaqI GGGAC 1 cut(s) 503
FatI CATG 8 cut(s) 117, 243, 404, 680, 699, 775, 1116, 1146
Fnu4HI GCNGC 4 cut(s) 91, 697, 822, 860
FokI GGATG 5 cut(s) 10, 108, 724, 988, 1003
Fsp4HI GCNGC 4 cut(s) 91, 697, 822, 860
FspBI CTAG 1 cut(s) 1041
GluI GCNGC 4 cut(s) 91, 697, 822, 860
GsuI CTGGAG 2 cut(s) 805, 1157
HaeIII GGCC 4 cut(s) 71, 336, 369, 862
HapII CCGG 1 cut(s) 1005
Hin1II CATG 8 cut(s) 121, 247, 408, 684, 703, 779, 1120, 1150
HincII GTYRAC 2 cut(s) 40, 570
HindII GTYRAC 2 cut(s) 40, 570
HinfI GANTC 2 cut(s) 197, 875
HpaII CCGG 1 cut(s) 1005
HphI GGTGA 2 cut(s) 538, 1068
Hpy166II GTNNAC 6 cut(s) 40, 141, 264, 570, 911, 1046
Hpy188I TCNGA 6 cut(s) 67, 112, 190, 668, 675, 735
Hpy188III TCNNGA 2 cut(s) 373, 776
Hpy8I GTNNAC 6 cut(s) 40, 141, 264, 570, 911, 1046
HpyAV CCTTC 5 cut(s) 347, 371, 384, 670, 1023
HpyCH4III ACNGT 6 cut(s) 145, 213, 539, 562, 894, 952
HpyCH4V TGCA 9 cut(s) 4, 136, 264, 549, 557, 603, 660, 684, 696
HpyF10VI GCNNNNNNNGC 2 cut(s) 818, 830
HpyF3I CTNAG 2 cut(s) 371, 420
Hsp92II CATG 8 cut(s) 121, 247, 408, 684, 703, 779, 1120, 1150
Kzo9I GATC 4 cut(s) 16, 427, 769, 956
LmnI GCTCC 1 cut(s) 441
Lsp1109I GCAGC 3 cut(s) 102, 708, 833
LweI GCATC 5 cut(s) 103, 504, 669, 821, 981
MaeI CTAG 1 cut(s) 1041
MaeIII GTNAC 1 cut(s) 1171
MalI GATC 4 cut(s) 18, 429, 771, 958
MboI GATC 4 cut(s) 16, 427, 769, 956
MboII GAAGA 8 cut(s) 153, 313, 316, 421, 476, 655, 808, 881
MflI RGATCY 1 cut(s) 427
MhlI GDGCHC 4 cut(s) 266, 513, 929, 1074
MluCI AATT 4 cut(s) 131, 481, 715, 1112
MmeI TCCRAC 2 cut(s) 108, 405
MroXI GAANNNNTTC 1 cut(s) 1015
MseI TTAA 4 cut(s) 297, 485, 593, 965
MslI CAYNNNNRTG 2 cut(s) 122, 1121
MspA1I CMGCKG 1 cut(s) 93
MspCI CTTAAG 1 cut(s) 296
MspI CCGG 1 cut(s) 1005
MspR9I CCNGG 2 cut(s) 784, 996
MvaI CCWGG 2 cut(s) 784, 996
MwoI GCNNNNNNNGC 2 cut(s) 818, 830
NcoI CCATGG 2 cut(s) 117, 404
NdeII GATC 4 cut(s) 16, 427, 769, 956
NlaIII CATG 8 cut(s) 121, 247, 408, 684, 703, 779, 1120, 1150
NlaIV GGNNCC 2 cut(s) 429, 1038
NmeAIII GCCGAG 1 cut(s) 345
NspI RCATGY 2 cut(s) 684, 1150
PaeI GCATGC 1 cut(s) 684
PagI TCATGA 1 cut(s) 775
PceI AGGCCT 2 cut(s) 71, 336
PciI ACATGT 1 cut(s) 1146
PdmI GAANNNNTTC 1 cut(s) 1015
PfeI GAWTC 2 cut(s) 197, 875
PflMI CCANNNNNTGG 2 cut(s) 588, 987
PkrI GCNGC 4 cut(s) 92, 698, 823, 861
PscI ACATGT 1 cut(s) 1146
PsiI TTATAA 1 cut(s) 383
Psp6I CCWGG 2 cut(s) 782, 994
PspGI CCWGG 2 cut(s) 782, 994
PspN4I GGNNCC 2 cut(s) 429, 1038
PspPI GGNCC 1 cut(s) 911
PstI CTGCAG 1 cut(s) 551
PstNI CAGNNNCTG 1 cut(s) 272
PsuI RGATCY 1 cut(s) 427
RsaI GTAC 1 cut(s) 1091
RsaNI GTAC 1 cut(s) 1090
RseI CAYNNNNRTG 2 cut(s) 122, 1121
SaqAI TTAA 4 cut(s) 297, 485, 593, 965
SatI GCNGC 4 cut(s) 91, 697, 822, 860
Sau3AI GATC 4 cut(s) 16, 427, 769, 956
Sau96I GGNCC 1 cut(s) 911
ScrFI CCNGG 2 cut(s) 784, 996
SduI GDGCHC 4 cut(s) 266, 513, 929, 1074
SfaNI GCATC 5 cut(s) 103, 504, 669, 821, 981
SfcI CTRYAG 3 cut(s) 547, 864, 951
SinI GGWCC 1 cut(s) 911
SmiMI CAYNNNNRTG 2 cut(s) 122, 1121
SmlI CTYRAG 2 cut(s) 296, 321
SmoI CTYRAG 2 cut(s) 296, 321
SphI GCATGC 1 cut(s) 684
Sse9I AATT 4 cut(s) 131, 481, 715, 1112
SseBI AGGCCT 2 cut(s) 71, 336
SsiI CCGC 3 cut(s) 93, 859, 1008
SspMI CTAG 1 cut(s) 1041
StuI AGGCCT 2 cut(s) 71, 336
StyD4I CCNGG 2 cut(s) 782, 994
StyI CCWWGG 3 cut(s) 117, 174, 404
TaaI ACNGT 6 cut(s) 145, 213, 539, 562, 894, 952
TaqI TCGA 3 cut(s) 203, 815, 1127
TaqII GACCGA 1 cut(s) 229
TasI AATT 4 cut(s) 131, 481, 715, 1112
TauI GCSGC 1 cut(s) 862
TfiI GAWTC 2 cut(s) 197, 875
Tru1I TTAA 4 cut(s) 297, 485, 593, 965
Tru9I TTAA 4 cut(s) 297, 485, 593, 965
TscAI CASTG 4 cut(s) 277, 551, 921, 1053
TseI GCWGC 3 cut(s) 90, 696, 821
TspDTI ATGAA 4 cut(s) 620, 728, 867, 1105
TspGWI ACGGA 2 cut(s) 205, 856
TspRI CASTG 4 cut(s) 277, 551, 921, 1053
Van91I CCANNNNNTGG 2 cut(s) 588, 987
Vha464I CTTAAG 1 cut(s) 296
VneI GTGCAC 1 cut(s) 262
VpaK11BI GGWCC 1 cut(s) 911
XapI RAATTY 1 cut(s) 1112
XceI RCATGY 2 cut(s) 684, 1150
XcmI CCANNNNNNNNNTGG 2 cut(s) 124, 421
XmnI GAANNNNTTC 1 cut(s) 1015
XspI CTAG 1 cut(s) 1041
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.