MD09G1290600.v1.1

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0011254
Physical Location & Seq
Reverse (-)
37249221 .. 37250968
1748 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1290600.v1.1.491

Sequence Viewer

Length: 729 bp
ATGCCATGGCTGGTAACGCCCTTTCCATCTCTGCAGATTGTTGGAATTGCAGTTTACAGTTCTCTTGTGGTGGTCTTCTACACATTCCTTGAATTTTTCCTCGGAAATAGAATCGTCGAATCACAGAGGGTGGAGAGGAAGATCCCATGGAAGACCGTCGCTCAGTTGGATCCTTTGCTCCCGTTTCCCTTTGTCCTCATAAAAGAAGAAGCTGTCTCTCCTGATTTAAGGGACGACATCTCTTTCTGTGCACTCTGCGACTTTGAGGTGAAAAAACACGGCAAGCACTGCAGGACCTGCAACCGTTGTGTTGATAGCTTTGACCACTACTGCCGGGCTGACGAAGTTGAGTACAGAGAAAGCATCGATAACAGCAGAGAAAGCCAGAGGATGGATTGTGAAACAGAAGCCGCCTACAGAAGAGGATTCATTGAACCATTACCGTTAGAGACCAAATGTCGACCATTGATGACGAGCACAGATAAAGGCACGACCACTGCTGTAGGATCGGGCTTAACACTTCTCATATCCAAAGGGTGGATGCCAGGGTCACCCGGCGGAAAGTTTTCAAGCCCAAGAAGGCGGGTTTCTGGTTCACTGACTATGTTCTCCGGCACTGTGCCCTCACCAAAGCACAAGTACCGAAACAACTTTGAATTGAACTTGATGGAGGTGTCGAGGAAGCTGGAAACCTACATATCAAGGCAGGTTCTATGTTCTGTTACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

243

Amino Acids

27.55

Weight (kDa)

8.55

Isoelectric Point (pI)

48.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 80 - 112 3.2e-06 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011254)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01730
fragaria_vesca FvH4_1g26210 FvH4_1g26210
malus_domestica MD09G1290600.v1.1 MD17G1285300.v1.1
prunus_persica Prupe.3G002400_v2.0.a1 Prupe.3G002400_v2.0.a1
pyrus_communis pycom09g19820 pycom17g28110
rosa_chinensis RchiOBHm_Chr3g0485751
rosa_laevigata RLG00000023128
rosa_multiflora Rmu_sc0003005.1_g000002
rosa_roxburghii Rroxscaffold_6G00396350 Rroxscaffold_6G00396370
rosa_rugosa Rorug03G0221100
rosa_samantha Rh3AG270400 Rh3BG305900 Rh3CG304300 Rh3DG300400
rosa_wichuraiana Rw3G024080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 305, 697
AccB7I CCANNNNNTGG 2 cut(s) 391, 537
AccI GTMKAC 1 cut(s) 460
AciI CCGC 3 cut(s) 411, 558, 583
AclWI GGATC 4 cut(s) 136, 164, 177, 514
AcsI RAATTY 1 cut(s) 92
AfaI GTAC 2 cut(s) 353, 641
AfiI CCNNNNNNNGG 2 cut(s) 391, 537
AgsI TTSAA 5 cut(s) 92, 434, 570, 656, 661
AhdI GACNNNNNGTC 1 cut(s) 456
AjnI CCWGG 1 cut(s) 544
AluBI AGCT 3 cut(s) 212, 318, 685
AluI AGCT 3 cut(s) 212, 318, 685
Alw21I GWGCWC 2 cut(s) 253, 479
Alw26I GTCTC 2 cut(s) 220, 443
Alw44I GTGCAC 1 cut(s) 249
AlwI GGATC 4 cut(s) 136, 164, 177, 514
AlwNI CAGNNNCTG 1 cut(s) 297
ApaLI GTGCAC 1 cut(s) 249
ApoI RAATTY 1 cut(s) 92
Asp700I GAANNNNTTC 1 cut(s) 565
AspS9I GGNCC 1 cut(s) 294
AsuC2I CCSGG 2 cut(s) 335, 555
AsuHPI GGTGA 3 cut(s) 280, 543, 618
AvaII GGWCC 1 cut(s) 294
BaeGI GKGCMC 2 cut(s) 253, 624
BamHI GGATCC 1 cut(s) 169
BbsI GAAGAC 2 cut(s) 67, 158
Bbv12I GWGCWC 2 cut(s) 253, 479
BccI CCATC 3 cut(s) 34, 385, 661
BceAI ACGGC 1 cut(s) 295
BciT130I CCWGG 1 cut(s) 546
BcnI CCSGG 2 cut(s) 335, 555
BcoDI GTCTC 2 cut(s) 220, 443
BfmI CTRYAG 4 cut(s) 32, 289, 415, 501
BfuAI ACCTGC 2 cut(s) 305, 697
BisI GCNGC 1 cut(s) 411
BlsI GCNGC 1 cut(s) 412
Bme1390I CCNGG 3 cut(s) 335, 546, 555
Bme18I GGWCC 1 cut(s) 294
BmeRI GACNNNNNGTC 1 cut(s) 456
BmgT120I GGNCC 1 cut(s) 294
BmiI GGNNCC 1 cut(s) 171
BmrFI CCNGG 3 cut(s) 335, 546, 555
BmsI GCATC 2 cut(s) 372, 531
BpiI GAAGAC 2 cut(s) 67, 158
BpuMI CCSGG 2 cut(s) 335, 555
Bsa29I ATCGAT 1 cut(s) 366
BsaAI YACGTR 1 cut(s) 726
BsaI GGTCTC 1 cut(s) 443
BsaJI CCNNGG 4 cut(s) 5, 100, 146, 545
Bsc4I CCNNNNNNNGG 2 cut(s) 391, 537
BseBI CCWGG 1 cut(s) 546
BseCI ATCGAT 1 cut(s) 366
BseDI CCNNGG 4 cut(s) 5, 100, 146, 545
BseGI GGATG 2 cut(s) 396, 546
BseLI CCNNNNNNNGG 2 cut(s) 391, 537
BseMII CTCAG 1 cut(s) 176
BseSI GKGCMC 2 cut(s) 253, 624
BshVI ATCGAT 1 cut(s) 366
BsiHKAI GWGCWC 2 cut(s) 253, 479
BsiSI CCGG 3 cut(s) 334, 555, 612
BslFI GGGAC 1 cut(s) 245
BslI CCNNNNNNNGG 2 cut(s) 391, 537
BsmAI GTCTC 2 cut(s) 220, 443
BsmFI GGGAC 1 cut(s) 245
Bso31I GGTCTC 1 cut(s) 443
Bsp1286I GDGCHC 3 cut(s) 253, 479, 624
Bsp143I GATC 3 cut(s) 141, 169, 506
Bsp19I CCATGG 2 cut(s) 5, 146
BspACI CCGC 3 cut(s) 411, 558, 583
BspCNI CTCAG 1 cut(s) 175
BspDI ATCGAT 1 cut(s) 366
BspLI GGNNCC 1 cut(s) 171
BspMAI CTGCAG 2 cut(s) 36, 293
BspMI ACCTGC 2 cut(s) 305, 697
BspPI GGATC 4 cut(s) 136, 164, 177, 514
BspTNI GGTCTC 1 cut(s) 443
BssECI CCNNGG 4 cut(s) 5, 100, 146, 545
BssMI GATC 3 cut(s) 141, 169, 506
BssT1I CCWWGG 2 cut(s) 5, 146
Bst2UI CCWGG 1 cut(s) 546
Bst4CI ACNGT 5 cut(s) 59, 157, 305, 444, 619
Bst6I CTCTTC 1 cut(s) 415
BstAPI GCANNNNNTGC 2 cut(s) 288, 297
BstBAI YACGTR 1 cut(s) 726
BstC8I GCNNGC 1 cut(s) 284
BstDEI CTNAG 1 cut(s) 162
BstDSI CCRYGG 2 cut(s) 5, 146
BstEII GGTNACC 1 cut(s) 549
BstF5I GGATG 2 cut(s) 396, 546
BstKTI GATC 3 cut(s) 144, 172, 509
BstMAI GTCTC 2 cut(s) 220, 443
BstMBI GATC 3 cut(s) 141, 169, 506
BstMWI GCNNNNNNNGC 4 cut(s) 16, 288, 297, 381
BstNI CCWGG 1 cut(s) 546
BstPI GGTNACC 1 cut(s) 549
BstSCI CCNGG 3 cut(s) 333, 544, 553
BstSFI CTRYAG 4 cut(s) 32, 289, 415, 501
BstSLI GKGCMC 2 cut(s) 253, 624
BstSNI TACGTA 1 cut(s) 726
BstV2I GAAGAC 2 cut(s) 67, 158
BstX2I RGATCY 2 cut(s) 141, 169
BstYI RGATCY 2 cut(s) 141, 169
Bsu15I ATCGAT 1 cut(s) 366
BsuTUI ATCGAT 1 cut(s) 366
BtgI CCRYGG 2 cut(s) 5, 146
BtsCI GGATG 2 cut(s) 396, 546
BtsI GCAGTG 2 cut(s) 286, 495
BtsIMutI CAGTG 4 cut(s) 286, 495, 596, 615
BveI ACCTGC 2 cut(s) 305, 697
Cac8I GCNNGC 1 cut(s) 284
CaiI CAGNNNCTG 1 cut(s) 297
Cfr13I GGNCC 1 cut(s) 294
ClaI ATCGAT 1 cut(s) 366
Csp6I GTAC 2 cut(s) 352, 640
CviAII CATG 2 cut(s) 6, 147
CviJI RGCY 9 cut(s) 10, 212, 318, 338, 384, 410, 513, 573, 685
CviKI_1 RGCY 9 cut(s) 10, 212, 318, 338, 384, 410, 513, 573, 685
CviQI GTAC 2 cut(s) 352, 640
DdeI CTNAG 1 cut(s) 162
DpnI GATC 3 cut(s) 143, 171, 508
DpnII GATC 3 cut(s) 141, 169, 506
DriI GACNNNNNGTC 1 cut(s) 456
Eam1104I CTCTTC 1 cut(s) 415
Eam1105I GACNNNNNGTC 1 cut(s) 456
EarI CTCTTC 1 cut(s) 415
EciI GGCGGA 1 cut(s) 573
Eco105I TACGTA 1 cut(s) 726
Eco130I CCWWGG 2 cut(s) 5, 146
Eco31I GGTCTC 1 cut(s) 443
Eco47I GGWCC 1 cut(s) 294
Eco91I GGTNACC 1 cut(s) 549
EcoO109I RGGNCCY 1 cut(s) 294
EcoO65I GGTNACC 1 cut(s) 549
EcoRII CCWGG 1 cut(s) 544
EcoT14I CCWWGG 2 cut(s) 5, 146
ErhI CCWWGG 2 cut(s) 5, 146
FaeI CATG 2 cut(s) 9, 150
FaiI YATR 7 cut(s) 7, 148, 200, 527, 605, 698, 715
FaqI GGGAC 1 cut(s) 245
FatI CATG 2 cut(s) 5, 146
FauI CCCGC 1 cut(s) 576
FblI GTMKAC 1 cut(s) 460
Fnu4HI GCNGC 1 cut(s) 411
FokI GGATG 2 cut(s) 403, 553
Fsp4HI GCNGC 1 cut(s) 411
GluI GCNGC 1 cut(s) 411
HapII CCGG 3 cut(s) 334, 555, 612
Hin1II CATG 2 cut(s) 9, 150
HincII GTYRAC 1 cut(s) 461
HindII GTYRAC 1 cut(s) 461
HinfI GANTC 3 cut(s) 111, 119, 426
HpaII CCGG 3 cut(s) 334, 555, 612
HphI GGTGA 3 cut(s) 280, 543, 618
Hpy166II GTNNAC 4 cut(s) 55, 251, 461, 596
Hpy188I TCNGA 1 cut(s) 104
Hpy188III TCNNGA 1 cut(s) 221
Hpy8I GTNNAC 4 cut(s) 55, 251, 461, 596
Hpy99I CGWCG 2 cut(s) 119, 161
HpyAV CCTTC 1 cut(s) 573
HpyCH4III ACNGT 5 cut(s) 59, 157, 305, 444, 619
HpyCH4IV ACGT 1 cut(s) 725
HpyCH4V TGCA 5 cut(s) 34, 50, 251, 291, 300
HpyF10VI GCNNNNNNNGC 4 cut(s) 16, 288, 297, 381
HpyF3I CTNAG 1 cut(s) 162
HpySE526I ACGT 1 cut(s) 725
Hsp92II CATG 2 cut(s) 9, 150
Kzo9I GATC 3 cut(s) 141, 169, 506
LmnI GCTCC 1 cut(s) 183
LweI GCATC 2 cut(s) 372, 531
MaeII ACGT 1 cut(s) 725
MaeIII GTNAC 3 cut(s) 13, 549, 721
MalI GATC 3 cut(s) 143, 171, 508
MboI GATC 3 cut(s) 141, 169, 506
MboII GAAGA 5 cut(s) 67, 151, 163, 218, 432
MflI RGATCY 2 cut(s) 141, 169
MhlI GDGCHC 3 cut(s) 253, 479, 624
MluCI AATT 3 cut(s) 45, 92, 656
MmeI TCCRAC 2 cut(s) 22, 147
MroXI GAANNNNTTC 1 cut(s) 565
MseI TTAA 2 cut(s) 227, 515
MspI CCGG 3 cut(s) 334, 555, 612
MspR9I CCNGG 3 cut(s) 335, 546, 555
MvaI CCWGG 1 cut(s) 546
MwoI GCNNNNNNNGC 4 cut(s) 16, 288, 297, 381
NciI CCSGG 2 cut(s) 335, 555
NcoI CCATGG 2 cut(s) 5, 146
NdeII GATC 3 cut(s) 141, 169, 506
NlaIII CATG 2 cut(s) 9, 150
NlaIV GGNNCC 1 cut(s) 171
NmuCI GTSAC 1 cut(s) 549
PdmI GAANNNNTTC 1 cut(s) 565
PfeI GAWTC 3 cut(s) 111, 119, 426
PflMI CCANNNNNTGG 2 cut(s) 391, 537
PkrI GCNGC 1 cut(s) 412
Ppu21I YACGTR 1 cut(s) 726
PpuMI RGGWCCY 1 cut(s) 294
Psp5II RGGWCCY 1 cut(s) 294
Psp6I CCWGG 1 cut(s) 544
PspEI GGTNACC 1 cut(s) 549
PspGI CCWGG 1 cut(s) 544
PspN4I GGNNCC 1 cut(s) 171
PspPI GGNCC 1 cut(s) 294
PspPPI RGGWCCY 1 cut(s) 294
PstI CTGCAG 2 cut(s) 36, 293
PstNI CAGNNNCTG 1 cut(s) 297
PsuI RGATCY 2 cut(s) 141, 169
RsaI GTAC 2 cut(s) 353, 641
RsaNI GTAC 2 cut(s) 352, 640
SalI GTCGAC 1 cut(s) 459
SaqAI TTAA 2 cut(s) 227, 515
SatI GCNGC 1 cut(s) 411
Sau3AI GATC 3 cut(s) 141, 169, 506
Sau96I GGNCC 1 cut(s) 294
ScrFI CCNGG 3 cut(s) 335, 546, 555
SduI GDGCHC 3 cut(s) 253, 479, 624
SetI ASST 9 cut(s) 214, 270, 299, 320, 675, 687, 695, 711, 728
SfaNI GCATC 2 cut(s) 372, 531
SfcI CTRYAG 4 cut(s) 32, 289, 415, 501
SinI GGWCC 1 cut(s) 294
SnaBI TACGTA 1 cut(s) 726
Sse9I AATT 3 cut(s) 45, 92, 656
SsiI CCGC 3 cut(s) 411, 558, 583
StyD4I CCNGG 3 cut(s) 333, 544, 553
StyI CCWWGG 2 cut(s) 5, 146
TaaI ACNGT 5 cut(s) 59, 157, 305, 444, 619
TaiI ACGT 1 cut(s) 728
TaqI TCGA 4 cut(s) 117, 366, 460, 677
TasI AATT 3 cut(s) 45, 92, 656
TatI WGTACW 1 cut(s) 351
TauI GCSGC 1 cut(s) 413
TfiI GAWTC 3 cut(s) 111, 119, 426
Tru1I TTAA 2 cut(s) 227, 515
Tru9I TTAA 2 cut(s) 227, 515
TscAI CASTG 4 cut(s) 293, 502, 603, 622
TseFI GTSAC 1 cut(s) 549
Tsp45I GTSAC 1 cut(s) 549
TspDTI ATGAA 1 cut(s) 418
TspRI CASTG 4 cut(s) 293, 502, 603, 622
Van91I CCANNNNNTGG 2 cut(s) 391, 537
VneI GTGCAC 1 cut(s) 249
VpaK11BI GGWCC 1 cut(s) 294
XapI RAATTY 1 cut(s) 92
XmiI GTMKAC 1 cut(s) 460
XmnI GAANNNNTTC 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.