AT4G02715

Proline-rich nuclear receptor coactivator motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011970
Physical Location & Seq
Reverse (-)
1200670 .. 1203380
2711 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G02715.1

Sequence Viewer

Length: 618 bp
ATGGAAACGCTTATTGTAGCTGTGGAACATAGGGATCAATATTATGGGAAGAAATCTCTTGGACATGATCGTTTTAGATCAGCTCCTTCCAAAACTTTTAGGCAGATCAATTGCAGAACTTTTCAATCTGGTGTGGGTTTGCTTCCAAGACCTAAGAGAACTTCTTCAACACCTTTAACCAAAGGAGCTCTTTCTCAAGTTCAGTCTCCTCGTTCTCCTAAGTCCGTTTTACCGGTTTTTCATCATCCATCTGTTGACAGTGGTAGAACCAGTCCCATTCCAATTGCTAATTGCAGAGGTTCTCAGATCCGTAGGTGTTCTAGTGAGTTTGTTGACAAAAGGAGAAGCCTTTCTTATTCTGAGCTATGGGCAGGACCTACTTACTCTAACTCACCTCCACCTGCTTCTGTGCCGATTCCTAAGTTTTCTCTCCAGCAAAAGAGGACGGTATCTTTGACCTTTCCTGCTCCTGACTCTGCTGTTGATATTCGTGAAGTTGCTAAGTCTGCACCAGTTTCTCCAACCTCATCTGGTGACAATCCTTTTCGTAGTACTGTCTCTGCCACTATGACACTGCGTCGCATGCTCAATCTTGAGCTTGAGACTGCAGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNRC

Protein Analysis

205

Amino Acids

22.58

Weight (kDa)

10.23

Isoelectric Point (pI)

68.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNRC PF15365 123 - 142 9.2e-07 Proline-rich nuclear receptor coactivator motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011970)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02715 AT4G02715
fragaria_vesca FvH4_2g23281
malus_domestica MD03G1262100.v1.1 MD11G1282800.v1.1
prunus_persica Prupe.8G238400_v2.0.a1
pyrus_communis pycom03g20990 pycom11g25050
rosa_chinensis RchiOBHm_Chr6g0290651
rosa_laevigata RLG00000012187
rosa_multiflora Rmu_co8113914.1_g000001 Rmu_sc0006791.1_g000005
rosa_roxburghii Rroxscaffold_7G00176830
rosa_rugosa Rorug06G0214000
rosa_samantha Rh6AG324500 Rh6BG332100 Rh6CG337800 Rh6DG325200
rosa_wichuraiana Rw6G028170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 409
Acc36I ACCTGC 1 cut(s) 409
AclWI GGATC 2 cut(s) 42, 301
AfaI GTAC 1 cut(s) 553
AgeI ACCGGT 1 cut(s) 232
AgsI TTSAA 2 cut(s) 125, 168
AhdI GACNNNNNGTC 1 cut(s) 576
AluBI AGCT 5 cut(s) 20, 83, 188, 364, 598
AluI AGCT 5 cut(s) 20, 83, 188, 364, 598
Alw21I GWGCWC 1 cut(s) 190
Alw26I GTCTC 3 cut(s) 210, 562, 596
AlwI GGATC 2 cut(s) 42, 301
ArsI GACNNNNNNTTYG 2 cut(s) 436, 468
AsiGI ACCGGT 1 cut(s) 232
Asp700I GAANNNNTTC 2 cut(s) 163, 349
AspS9I GGNCC 1 cut(s) 374
AsuHPI GGTGA 2 cut(s) 384, 545
AvaII GGWCC 1 cut(s) 374
BanII GRGCYC 1 cut(s) 190
Bbv12I GWGCWC 1 cut(s) 190
BccI CCATC 1 cut(s) 256
BcoDI GTCTC 3 cut(s) 210, 562, 596
BfaI CTAG 1 cut(s) 321
BfmI CTRYAG 1 cut(s) 606
BfuAI ACCTGC 1 cut(s) 409
BmcAI AGTACT 1 cut(s) 553
Bme18I GGWCC 1 cut(s) 374
BmeRI GACNNNNNGTC 1 cut(s) 576
BmgT120I GGNCC 1 cut(s) 374
BpmI CTGGAG 1 cut(s) 416
BpuEI CTTGAG 2 cut(s) 180, 614
BsaWI WCCGGW 1 cut(s) 232
Bse118I RCCGGY 1 cut(s) 232
Bse1I ACTGG 2 cut(s) 270, 512
BseGI GGATG 1 cut(s) 244
BseMII CTCAG 2 cut(s) 317, 351
BseNI ACTGG 2 cut(s) 270, 512
BseRI GAGGAG 1 cut(s) 198
BsgI GTGCAG 1 cut(s) 492
BshTI ACCGGT 1 cut(s) 232
BsiHKAI GWGCWC 1 cut(s) 190
BsiSI CCGG 1 cut(s) 233
BslFI GGGAC 1 cut(s) 258
BsmAI GTCTC 3 cut(s) 210, 562, 596
BsmFI GGGAC 1 cut(s) 258
Bsp1286I GDGCHC 1 cut(s) 190
Bsp143I GATC 5 cut(s) 34, 67, 77, 105, 306
BspCNI CTCAG 2 cut(s) 316, 352
BspMAI CTGCAG 1 cut(s) 610
BspMI ACCTGC 1 cut(s) 409
BspPI GGATC 2 cut(s) 42, 301
BsrFI RCCGGY 1 cut(s) 232
BsrI ACTGG 2 cut(s) 270, 512
BssAI RCCGGY 1 cut(s) 232
BssMI GATC 5 cut(s) 34, 67, 77, 105, 306
Bst4CI ACNGT 3 cut(s) 260, 448, 556
BstC8I GCNNGC 1 cut(s) 584
BstDEI CTNAG 6 cut(s) 153, 219, 303, 360, 420, 501
BstF5I GGATG 1 cut(s) 244
BstKTI GATC 5 cut(s) 37, 70, 80, 108, 309
BstMAI GTCTC 3 cut(s) 210, 562, 596
BstMBI GATC 5 cut(s) 34, 67, 77, 105, 306
BstMWI GCNNNNNNNGC 2 cut(s) 506, 583
BstNSI RCATGY 1 cut(s) 586
BstSFI CTRYAG 1 cut(s) 606
BstX2I RGATCY 1 cut(s) 306
BstYI RGATCY 1 cut(s) 306
BtsCI GGATG 1 cut(s) 244
BtsI GCAGTG 1 cut(s) 572
BtsIMutI CAGTG 2 cut(s) 265, 572
BveI ACCTGC 1 cut(s) 409
Cac8I GCNNGC 1 cut(s) 584
Cfr10I RCCGGY 1 cut(s) 232
Cfr13I GGNCC 1 cut(s) 374
CseI GACGC 1 cut(s) 566
Csp6I GTAC 1 cut(s) 552
CspAI ACCGGT 1 cut(s) 232
CviAII CATG 2 cut(s) 65, 583
CviJI RGCY 6 cut(s) 20, 83, 188, 348, 364, 598
CviKI_1 RGCY 6 cut(s) 20, 83, 188, 348, 364, 598
CviQI GTAC 1 cut(s) 552
DdeI CTNAG 6 cut(s) 153, 219, 303, 360, 420, 501
DpnI GATC 5 cut(s) 36, 69, 79, 107, 308
DpnII GATC 5 cut(s) 34, 67, 77, 105, 306
DriI GACNNNNNGTC 1 cut(s) 576
Eam1105I GACNNNNNGTC 1 cut(s) 576
Ecl136II GAGCTC 1 cut(s) 188
Eco24I GRGCYC 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 374
Eco53kI GAGCTC 1 cut(s) 188
EcoICRI GAGCTC 1 cut(s) 188
EcoO109I RGGNCCY 1 cut(s) 374
EcoT38I GRGCYC 1 cut(s) 190
FaeI CATG 2 cut(s) 68, 586
FaiI YATR 6 cut(s) 30, 45, 66, 367, 569, 584
FalI AAGNNNNNCTT 4 cut(s) 174, 206, 337, 369
FaqI GGGAC 1 cut(s) 258
FatI CATG 2 cut(s) 64, 582
FokI GGATG 1 cut(s) 231
FriOI GRGCYC 1 cut(s) 190
FspBI CTAG 1 cut(s) 321
GsuI CTGGAG 1 cut(s) 416
HapII CCGG 1 cut(s) 233
HgaI GACGC 1 cut(s) 566
Hin1II CATG 2 cut(s) 68, 586
HincII GTYRAC 2 cut(s) 256, 334
HindII GTYRAC 2 cut(s) 256, 334
HinfI GANTC 2 cut(s) 415, 473
HpaII CCGG 1 cut(s) 233
HphI GGTGA 2 cut(s) 384, 545
Hpy166II GTNNAC 2 cut(s) 256, 334
Hpy188I TCNGA 2 cut(s) 306, 361
Hpy188III TCNNGA 3 cut(s) 470, 491, 593
Hpy8I GTNNAC 2 cut(s) 256, 334
Hpy99I CGWCG 1 cut(s) 582
HpyAV CCTTC 1 cut(s) 96
HpyCH4III ACNGT 3 cut(s) 260, 448, 556
HpyCH4V TGCA 4 cut(s) 114, 294, 509, 608
HpyF10VI GCNNNNNNNGC 2 cut(s) 506, 583
HpyF3I CTNAG 6 cut(s) 153, 219, 303, 360, 420, 501
Hsp92II CATG 2 cut(s) 68, 586
Kzo9I GATC 5 cut(s) 34, 67, 77, 105, 306
LmnI GCTCC 3 cut(s) 88, 185, 472
MaeI CTAG 1 cut(s) 321
MaeIII GTNAC 1 cut(s) 533
MalI GATC 5 cut(s) 36, 69, 79, 107, 308
MboI GATC 5 cut(s) 34, 67, 77, 105, 306
MboII GAAGA 2 cut(s) 61, 156
MfeI CAATTG 2 cut(s) 109, 282
MflI RGATCY 1 cut(s) 306
MhlI GDGCHC 1 cut(s) 190
MluCI AATT 3 cut(s) 109, 282, 289
MlyI GAGTC 1 cut(s) 467
MmeI TCCRAC 1 cut(s) 545
MnlI CCTC 5 cut(s) 219, 290, 405, 435, 535
MroXI GAANNNNTTC 2 cut(s) 163, 349
MseI TTAA 1 cut(s) 176
MspI CCGG 1 cut(s) 233
MunI CAATTG 2 cut(s) 109, 282
MwoI GCNNNNNNNGC 2 cut(s) 506, 583
NdeII GATC 5 cut(s) 34, 67, 77, 105, 306
NlaIII CATG 2 cut(s) 68, 586
NmuCI GTSAC 1 cut(s) 533
NspI RCATGY 1 cut(s) 586
PaeI GCATGC 1 cut(s) 586
PaqCI CACCTGC 1 cut(s) 409
PdmI GAANNNNTTC 2 cut(s) 163, 349
PfeI GAWTC 1 cut(s) 415
PinAI ACCGGT 1 cut(s) 232
PleI GAGTC 1 cut(s) 467
PpsI GAGTC 1 cut(s) 467
PpuMI RGGWCCY 1 cut(s) 374
Psp124BI GAGCTC 1 cut(s) 190
Psp5II RGGWCCY 1 cut(s) 374
PspPI GGNCC 1 cut(s) 374
PspPPI RGGWCCY 1 cut(s) 374
PstI CTGCAG 1 cut(s) 610
PsuI RGATCY 1 cut(s) 306
RsaI GTAC 1 cut(s) 553
RsaNI GTAC 1 cut(s) 552
SacI GAGCTC 1 cut(s) 190
SaqAI TTAA 1 cut(s) 176
Sau3AI GATC 5 cut(s) 34, 67, 77, 105, 306
Sau96I GGNCC 1 cut(s) 374
ScaI AGTACT 1 cut(s) 553
SchI GAGTC 1 cut(s) 467
SduI GDGCHC 1 cut(s) 190
SfcI CTRYAG 1 cut(s) 606
SinI GGWCC 1 cut(s) 374
SmlI CTYRAG 3 cut(s) 195, 593, 599
SmoI CTYRAG 3 cut(s) 195, 593, 599
SphI GCATGC 1 cut(s) 586
Sse9I AATT 3 cut(s) 109, 282, 289
SspI AATATT 1 cut(s) 41
SspMI CTAG 1 cut(s) 321
SstI GAGCTC 1 cut(s) 190
TaaI ACNGT 3 cut(s) 260, 448, 556
TasI AATT 3 cut(s) 109, 282, 289
TatI WGTACW 1 cut(s) 551
TfiI GAWTC 1 cut(s) 415
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TscAI CASTG 2 cut(s) 265, 579
TseFI GTSAC 1 cut(s) 533
Tsp45I GTSAC 1 cut(s) 533
TspDTI ATGAA 1 cut(s) 230
TspGWI ACGGA 2 cut(s) 214, 299
TspRI CASTG 2 cut(s) 265, 579
VpaK11BI GGWCC 1 cut(s) 374
XceI RCATGY 1 cut(s) 586
XmnI GAANNNNTTC 2 cut(s) 163, 349
XspI CTAG 1 cut(s) 321
ZrmI AGTACT 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.