Prupe.8G238400_v2.0.a1

Proline-rich nuclear receptor coactivator motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0011970
Physical Location & Seq
Reverse (-)
20995711 .. 20996643
933 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G238400.1

Sequence Viewer

Length: 630 bp
ATGGAAACTCTTCTTGTTGTGGCGGAGCCTAAGAACCAGTACTACAACCGGGTCAAGCCACATGGGCCTGTCCGATACGGCCCGTCACCTTCGAAGGACTTCAGAGCGATCAATTGCCGGACTTTCCAATCCGGCACAGGTATACTCCCTACCCCATCGAAGAATTGCTCTACTCCTGTGTCCAAACGAGCATGCTCTTCTTCTTCTAAGATAACTACACCTGGTCCAAACAAGACACCTACCCCTAGTGTAGGTTCACAGTCTGATAGTAAAACACTTGGTAAAAGCACACCAATTGCTATCAATGTCAAAAGCTCGAAGAAAGAAAAGCCTTTTAATGGAAGTTTTTCATTTTCTGAGCTCTGGGCTGGCCCTGCTTACTCCAACTCTCCCCCACCTAGTTCTCTGCCAATACCCAAGTTTTCAATCCGACCCAAGAGAACCGTGTCGCTTGAATTGCCAAGCTCCGCTTCTGATATGGAAATGCACCCAACTCACCCAATTGCCAAGTCTGCACCTGCATCCCCAACTAGGGAGCATAGCTCTTCTGCAAGAGACCTCTTTCATAACGCTGACTCTGCGACCAGGACTCTACGTCGCATTCTGAATCTTGATGTTGACGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNRC

Protein Analysis

210

Amino Acids

22.58

Weight (kDa)

9.85

Isoelectric Point (pI)

57.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011970)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02715 AT4G02715
fragaria_vesca FvH4_2g23281
malus_domestica MD03G1262100.v1.1 MD11G1282800.v1.1
prunus_persica Prupe.8G238400_v2.0.a1
pyrus_communis pycom03g20990 pycom11g25050
rosa_chinensis RchiOBHm_Chr6g0290651
rosa_laevigata RLG00000012187
rosa_multiflora Rmu_co8113914.1_g000001 Rmu_sc0006791.1_g000005
rosa_roxburghii Rroxscaffold_7G00176830
rosa_rugosa Rorug06G0214000
rosa_samantha Rh6AG324500 Rh6BG332100 Rh6CG337800 Rh6DG325200
rosa_wichuraiana Rw6G028170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 526
Acc36I ACCTGC 1 cut(s) 526
AccI GTMKAC 1 cut(s) 142
AciI CCGC 2 cut(s) 23, 468
AcuI CTGAAG 1 cut(s) 85
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 4 cut(s) 251, 338, 531, 532
AgsI TTSAA 2 cut(s) 426, 455
AhdI GACNNNNNGTC 1 cut(s) 594
AjnI CCWGG 2 cut(s) 220, 584
AjuI GAANNNNNNNTTGG 2 cut(s) 454, 486
AluBI AGCT 4 cut(s) 315, 361, 465, 543
AluI AGCT 4 cut(s) 315, 361, 465, 543
Alw21I GWGCWC 1 cut(s) 363
Alw26I GTCTC 1 cut(s) 549
AoxI GGCC 3 cut(s) 65, 79, 370
Asp700I GAANNNNTTC 3 cut(s) 9, 98, 346
AspS9I GGNCC 4 cut(s) 65, 80, 224, 371
AsuC2I CCSGG 1 cut(s) 50
AsuHPI GGTGA 2 cut(s) 78, 488
AsuII TTCGAA 1 cut(s) 92
AvaII GGWCC 1 cut(s) 224
BanII GRGCYC 1 cut(s) 363
Bbv12I GWGCWC 1 cut(s) 363
BccI CCATC 1 cut(s) 163
BceAI ACGGC 1 cut(s) 94
BciT130I CCWGG 2 cut(s) 222, 586
BcnI CCSGG 1 cut(s) 50
BcoDI GTCTC 1 cut(s) 549
BfaI CTAG 3 cut(s) 246, 399, 531
BfuAI ACCTGC 1 cut(s) 526
BglI GCCNNNNNGGC 1 cut(s) 64
BmcAI AGTACT 1 cut(s) 41
Bme1390I CCNGG 3 cut(s) 50, 222, 586
Bme18I GGWCC 1 cut(s) 224
BmeRI GACNNNNNGTC 1 cut(s) 594
BmgT120I GGNCC 4 cut(s) 65, 80, 224, 371
BmiI GGNNCC 1 cut(s) 27
BmrFI CCNGG 3 cut(s) 50, 222, 586
BmsI GCATC 1 cut(s) 530
BplI GAGNNNNNCTC 2 cut(s) 527, 559
Bpu14I TTCGAA 1 cut(s) 92
BpuMI CCSGG 1 cut(s) 50
BsaI GGTCTC 1 cut(s) 549
Bsc4I CCNNNNNNNGG 4 cut(s) 251, 338, 531, 532
Bse1I ACTGG 1 cut(s) 37
BseBI CCWGG 2 cut(s) 222, 586
BseGI GGATG 1 cut(s) 521
BseLI CCNNNNNNNGG 4 cut(s) 251, 338, 531, 532
BseMII CTCAG 1 cut(s) 348
BseNI ACTGG 1 cut(s) 37
BsgI GTGCAG 1 cut(s) 498
BshFI GGCC 3 cut(s) 67, 81, 372
BsiHKAI GWGCWC 1 cut(s) 363
BsiSI CCGG 3 cut(s) 49, 118, 132
BslI CCNNNNNNNGG 4 cut(s) 251, 338, 531, 532
BsmAI GTCTC 1 cut(s) 549
BsmI GAATGC 1 cut(s) 600
BsnI GGCC 3 cut(s) 67, 81, 372
Bso31I GGTCTC 1 cut(s) 549
Bsp119I TTCGAA 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 363
Bsp143I GATC 1 cut(s) 108
BspACI CCGC 2 cut(s) 23, 468
BspANI GGCC 3 cut(s) 67, 81, 372
BspCNI CTCAG 1 cut(s) 349
BspLI GGNNCC 1 cut(s) 27
BspMI ACCTGC 1 cut(s) 526
BspQI GCTCTTC 2 cut(s) 202, 550
BspT104I TTCGAA 1 cut(s) 92
BspTNI GGTCTC 1 cut(s) 549
BsrI ACTGG 1 cut(s) 37
BssMI GATC 1 cut(s) 108
BssNAI GTATAC 1 cut(s) 143
Bst1107I GTATAC 1 cut(s) 143
Bst2UI CCWGG 2 cut(s) 222, 586
Bst4CI ACNGT 2 cut(s) 261, 445
Bst6I CTCTTC 3 cut(s) 15, 202, 550
BstBI TTCGAA 1 cut(s) 92
BstC8I GCNNGC 2 cut(s) 193, 370
BstDEI CTNAG 3 cut(s) 30, 207, 357
BstENI CCTNNNNNAGG 1 cut(s) 249
BstF5I GGATG 1 cut(s) 521
BstKTI GATC 1 cut(s) 111
BstMAI GTCTC 1 cut(s) 549
BstMBI GATC 1 cut(s) 108
BstMWI GCNNNNNNNGC 5 cut(s) 64, 374, 457, 512, 578
BstNI CCWGG 2 cut(s) 222, 586
BstNSI RCATGY 1 cut(s) 195
BstSCI CCNGG 3 cut(s) 48, 220, 584
BstZ17I GTATAC 1 cut(s) 143
BsuRI GGCC 3 cut(s) 67, 81, 372
BtsCI GGATG 1 cut(s) 521
BveI ACCTGC 1 cut(s) 526
Cac8I GCNNGC 2 cut(s) 193, 370
Cfr13I GGNCC 4 cut(s) 65, 80, 224, 371
CsiI ACCWGGT 1 cut(s) 220
Csp6I GTAC 1 cut(s) 40
CviAII CATG 2 cut(s) 62, 192
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 3 cut(s) 30, 207, 357
DpnI GATC 1 cut(s) 110
DpnII GATC 1 cut(s) 108
DriI GACNNNNNGTC 1 cut(s) 594
Eam1104I CTCTTC 3 cut(s) 15, 202, 550
Eam1105I GACNNNNNGTC 1 cut(s) 594
EarI CTCTTC 3 cut(s) 15, 202, 550
EciI GGCGGA 1 cut(s) 38
Ecl136II GAGCTC 1 cut(s) 361
Eco24I GRGCYC 1 cut(s) 363
Eco31I GGTCTC 1 cut(s) 549
Eco47I GGWCC 1 cut(s) 224
Eco53kI GAGCTC 1 cut(s) 361
Eco57I CTGAAG 1 cut(s) 85
EcoICRI GAGCTC 1 cut(s) 361
EcoNI CCTNNNNNAGG 1 cut(s) 249
EcoRII CCWGG 2 cut(s) 220, 584
EcoT38I GRGCYC 1 cut(s) 363
FaeI CATG 2 cut(s) 65, 195
FaiI YATR 6 cut(s) 63, 143, 193, 479, 540, 567
FalI AAGNNNNNCTT 2 cut(s) 454, 486
FatI CATG 2 cut(s) 61, 191
FblI GTMKAC 1 cut(s) 142
FokI GGATG 1 cut(s) 508
FriOI GRGCYC 1 cut(s) 363
FspBI CTAG 3 cut(s) 246, 399, 531
HaeIII GGCC 3 cut(s) 67, 81, 372
HapII CCGG 3 cut(s) 49, 118, 132
Hin1II CATG 2 cut(s) 65, 195
HincII GTYRAC 1 cut(s) 619
HindII GTYRAC 1 cut(s) 619
HinfI GANTC 3 cut(s) 575, 589, 607
HpaII CCGG 3 cut(s) 49, 118, 132
HphI GGTGA 2 cut(s) 78, 488
Hpy166II GTNNAC 3 cut(s) 143, 257, 619
Hpy188I TCNGA 7 cut(s) 74, 104, 265, 358, 431, 475, 606
Hpy188III TCNNGA 1 cut(s) 611
Hpy8I GTNNAC 3 cut(s) 143, 257, 619
Hpy99I CGWCG 1 cut(s) 600
HpyAV CCTTC 2 cut(s) 88, 99
HpyCH4III ACNGT 2 cut(s) 261, 445
HpyCH4IV ACGT 1 cut(s) 595
HpyCH4V TGCA 4 cut(s) 487, 515, 521, 551
HpyF10VI GCNNNNNNNGC 5 cut(s) 64, 374, 457, 512, 578
HpyF3I CTNAG 3 cut(s) 30, 207, 357
HpySE526I ACGT 1 cut(s) 595
Hsp92II CATG 2 cut(s) 65, 195
Kzo9I GATC 1 cut(s) 108
LguI GCTCTTC 2 cut(s) 202, 550
LmnI GCTCC 3 cut(s) 25, 470, 535
LweI GCATC 1 cut(s) 530
MabI ACCWGGT 1 cut(s) 220
MaeI CTAG 3 cut(s) 246, 399, 531
MaeII ACGT 1 cut(s) 595
MaeIII GTNAC 1 cut(s) 84
MalI GATC 1 cut(s) 110
MboI GATC 1 cut(s) 108
MboII GAAGA 6 cut(s) 172, 189, 192, 195, 331, 537
MfeI CAATTG 3 cut(s) 112, 294, 501
MhlI GDGCHC 1 cut(s) 363
MluCI AATT 5 cut(s) 112, 163, 294, 455, 501
MlyI GAGTC 2 cut(s) 569, 583
MmeI TCCRAC 2 cut(s) 408, 454
MnlI CCTC 1 cut(s) 569
MroXI GAANNNNTTC 3 cut(s) 9, 98, 346
MseI TTAA 1 cut(s) 336
MspI CCGG 3 cut(s) 49, 118, 132
MspR9I CCNGG 3 cut(s) 50, 222, 586
MunI CAATTG 3 cut(s) 112, 294, 501
Mva1269I GAATGC 1 cut(s) 600
MvaI CCWGG 2 cut(s) 222, 586
MwoI GCNNNNNNNGC 5 cut(s) 64, 374, 457, 512, 578
NciI CCSGG 1 cut(s) 50
NdeII GATC 1 cut(s) 108
NlaIII CATG 2 cut(s) 65, 195
NlaIV GGNNCC 1 cut(s) 27
NmuCI GTSAC 1 cut(s) 84
NspI RCATGY 1 cut(s) 195
NspV TTCGAA 1 cut(s) 92
PaeI GCATGC 1 cut(s) 195
PaqCI CACCTGC 1 cut(s) 526
PciSI GCTCTTC 2 cut(s) 202, 550
PctI GAATGC 1 cut(s) 600
PdmI GAANNNNTTC 3 cut(s) 9, 98, 346
PfeI GAWTC 1 cut(s) 607
PleI GAGTC 2 cut(s) 569, 583
PpsI GAGTC 2 cut(s) 569, 583
Psp124BI GAGCTC 1 cut(s) 363
Psp6I CCWGG 2 cut(s) 220, 584
PspGI CCWGG 2 cut(s) 220, 584
PspN4I GGNNCC 1 cut(s) 27
PspPI GGNCC 4 cut(s) 65, 80, 224, 371
PsrI GAACNNNNNNTAC 2 cut(s) 26, 58
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
SacI GAGCTC 1 cut(s) 363
SapI GCTCTTC 2 cut(s) 202, 550
SaqAI TTAA 1 cut(s) 336
Sau3AI GATC 1 cut(s) 108
Sau96I GGNCC 4 cut(s) 65, 80, 224, 371
ScaI AGTACT 1 cut(s) 41
SchI GAGTC 2 cut(s) 569, 583
ScrFI CCNGG 3 cut(s) 50, 222, 586
SduI GDGCHC 1 cut(s) 363
SexAI ACCWGGT 1 cut(s) 220
SfaNI GCATC 1 cut(s) 530
SfuI TTCGAA 1 cut(s) 92
SinI GGWCC 1 cut(s) 224
SphI GCATGC 1 cut(s) 195
Sse9I AATT 5 cut(s) 112, 163, 294, 455, 501
SsiI CCGC 2 cut(s) 23, 468
SspMI CTAG 3 cut(s) 246, 399, 531
SstI GAGCTC 1 cut(s) 363
StyD4I CCNGG 3 cut(s) 48, 220, 584
TaaI ACNGT 2 cut(s) 261, 445
TaiI ACGT 1 cut(s) 598
TaqI TCGA 3 cut(s) 92, 158, 317
TasI AATT 5 cut(s) 112, 163, 294, 455, 501
TatI WGTACW 1 cut(s) 39
TfiI GAWTC 1 cut(s) 607
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TseFI GTSAC 1 cut(s) 84
Tsp45I GTSAC 1 cut(s) 84
TspDTI ATGAA 2 cut(s) 339, 554
VpaK11BI GGWCC 1 cut(s) 224
XagI CCTNNNNNAGG 1 cut(s) 249
XceI RCATGY 1 cut(s) 195
XmiI GTMKAC 1 cut(s) 142
XmnI GAANNNNTTC 3 cut(s) 9, 98, 346
XspI CTAG 3 cut(s) 246, 399, 531
ZrmI AGTACT 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.