MD03G1262100.v1.1

Proline-rich nuclear receptor coactivator motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0011970
Physical Location & Seq
Reverse (-)
34813808 .. 34816714
2907 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1262100.v1.1.491

Sequence Viewer

Length: 636 bp
ATGGAGACTCTTCATGTTGTGGCGCAGCATAAGAACCAGTACTACAGCCGGGGGAAGTCACACGGCCCGGGCAGAGTCGGCCCGTCGCCGTCCAAGGGCTTCCGAGGGATCAATTGCCGGACTTTCCAATCCGGGTCAGGTATGCTCCCTACCCCGTCCAAGGCTTGCTCTACTCCTGTATCCAAACAGAGAGCATGCTCTGCTTCTCCTTCTCCTAGGATAACTGCACCTAGTCCAAACAAGACGCATACACCTAGTCCAGTTTCACAGTCCGATAGCAGGACACTGAGTAAAAGCACCCCAATTGCTATCAATGTCAAAAACTCGAAGAAAGGCAAGCACTTCAATGGAAGTTTTTCATTTTCTGAGCTCTGGGCCGGCCCGGCTTACTCCAACTCTCCCCCACCGAATTCGTTGCCAATCCCCAAGTTTTCAATCCGTCCCAAGAGAACCGTGTCGCTCGAATTGCCCAAGTCGCCCGCTGACAGCGAAATGCACCACCCAATTGCCAAGTCTGCACCTGCATCCCCAACTAGGGAGCATGGTGGGTCTGCTGCTAGGGATCTCTTTGACAACGCTGACTCCGCGACCAAGACTCTGCGTCGCATTCTGAATCTCGATGTTGACGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNRC

Protein Analysis

212

Amino Acids

22.61

Weight (kDa)

10.14

Isoelectric Point (pI)

65.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNRC PF15365 125 - 144 2.7e-06 Proline-rich nuclear receptor coactivator motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011970)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02715 AT4G02715
fragaria_vesca FvH4_2g23281
malus_domestica MD03G1262100.v1.1 MD11G1282800.v1.1
prunus_persica Prupe.8G238400_v2.0.a1
pyrus_communis pycom03g20990 pycom11g25050
rosa_chinensis RchiOBHm_Chr6g0290651
rosa_laevigata RLG00000012187
rosa_multiflora Rmu_co8113914.1_g000001 Rmu_sc0006791.1_g000005
rosa_roxburghii Rroxscaffold_7G00176830
rosa_rugosa Rorug06G0214000
rosa_samantha Rh6AG324500 Rh6BG332100 Rh6CG337800 Rh6DG325200
rosa_wichuraiana Rw6G028170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 529
Acc36I ACCTGC 1 cut(s) 529
AccII CGCG 1 cut(s) 587
AciI CCGC 2 cut(s) 480, 585
AclWI GGATC 2 cut(s) 116, 570
AcsI RAATTY 1 cut(s) 409
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 5 cut(s) 95, 160, 279, 534, 535
AgsI TTSAA 2 cut(s) 346, 435
AhdI GACNNNNNGTC 1 cut(s) 600
AluBI AGCT 1 cut(s) 370
AluI AGCT 1 cut(s) 370
Alw21I GWGCWC 1 cut(s) 372
AlwI GGATC 2 cut(s) 116, 570
Ama87I CYCGRG 1 cut(s) 67
AoxI GGCC 4 cut(s) 64, 79, 375, 379
ApeKI GCWGC 2 cut(s) 25, 554
ApoI RAATTY 1 cut(s) 409
Asp700I GAANNNNTTC 1 cut(s) 355
AspA2I CCTAGG 1 cut(s) 215
AspLEI GCGC 1 cut(s) 25
AspS9I GGNCC 4 cut(s) 65, 80, 375, 380
AsuC2I CCSGG 5 cut(s) 50, 68, 69, 133, 383
AvaI CYCGRG 1 cut(s) 67
AvrII CCTAGG 1 cut(s) 215
BaeI ACNNNNGTAYC 2 cut(s) 162, 195
BanII GRGCYC 1 cut(s) 372
Bbv12I GWGCWC 1 cut(s) 372
BbvI GCAGC 2 cut(s) 37, 541
BceAI ACGGC 2 cut(s) 73, 79
BcgI CGANNNNNNTGC 2 cut(s) 397, 431
BciVI GTATCC 1 cut(s) 190
BcnI CCSGG 5 cut(s) 50, 68, 69, 133, 383
BfaI CTAG 5 cut(s) 216, 231, 255, 534, 558
BfmI CTRYAG 1 cut(s) 43
BfuAI ACCTGC 1 cut(s) 529
BfuI GTATCC 1 cut(s) 190
BglI GCCNNNNNGGC 1 cut(s) 383
BisI GCNGC 2 cut(s) 26, 555
BlnI CCTAGG 1 cut(s) 215
BlsI GCNGC 2 cut(s) 27, 556
BmcAI AGTACT 1 cut(s) 41
Bme1390I CCNGG 5 cut(s) 50, 68, 69, 133, 383
BmeRI GACNNNNNGTC 1 cut(s) 600
BmeT110I CYCGRG 1 cut(s) 67
BmgT120I GGNCC 4 cut(s) 65, 80, 375, 380
BmrFI CCNGG 5 cut(s) 50, 68, 69, 133, 383
BmsI GCATC 1 cut(s) 533
BpuMI CCSGG 5 cut(s) 50, 68, 69, 133, 383
BsaJI CCNNGG 6 cut(s) 49, 67, 93, 103, 159, 215
BsaXI ACNNNNNCTCC 2 cut(s) 566, 596
Bsc4I CCNNNNNNNGG 5 cut(s) 95, 160, 279, 534, 535
Bse118I RCCGGY 1 cut(s) 377
Bse1I ACTGG 2 cut(s) 37, 260
BseDI CCNNGG 6 cut(s) 49, 67, 93, 103, 159, 215
BseGI GGATG 1 cut(s) 524
BseLI CCNNNNNNNGG 5 cut(s) 95, 160, 279, 534, 535
BseMII CTCAG 2 cut(s) 278, 357
BseNI ACTGG 2 cut(s) 37, 260
BseXI GCAGC 2 cut(s) 37, 541
BsgI GTGCAG 2 cut(s) 210, 501
Bsh1236I CGCG 1 cut(s) 587
BshFI GGCC 4 cut(s) 66, 81, 377, 381
BsiHKAI GWGCWC 1 cut(s) 372
BsiHKCI CYCGRG 1 cut(s) 67
BsiSI CCGG 6 cut(s) 49, 68, 118, 132, 378, 383
BslFI GGGAC 1 cut(s) 426
BslI CCNNNNNNNGG 5 cut(s) 95, 160, 279, 534, 535
BsmFI GGGAC 1 cut(s) 426
BsmI GAATGC 1 cut(s) 606
BsnI GGCC 4 cut(s) 66, 81, 377, 381
BsoBI CYCGRG 1 cut(s) 67
Bsp1286I GDGCHC 1 cut(s) 372
Bsp143I GATC 2 cut(s) 108, 562
BspACI CCGC 2 cut(s) 480, 585
BspANI GGCC 4 cut(s) 66, 81, 377, 381
BspCNI CTCAG 2 cut(s) 279, 358
BspFNI CGCG 1 cut(s) 587
BspMI ACCTGC 1 cut(s) 529
BspPI GGATC 2 cut(s) 116, 570
BsrFI RCCGGY 1 cut(s) 377
BsrI ACTGG 2 cut(s) 37, 260
BssAI RCCGGY 1 cut(s) 377
BssECI CCNNGG 6 cut(s) 49, 67, 93, 103, 159, 215
BssMI GATC 2 cut(s) 108, 562
BssT1I CCWWGG 3 cut(s) 93, 159, 215
Bst4CI ACNGT 2 cut(s) 270, 454
Bst6I CTCTTC 1 cut(s) 15
BstAPI GCANNNNNTGC 1 cut(s) 200
BstC8I GCNNGC 5 cut(s) 166, 196, 338, 379, 480
BstDEI CTNAG 2 cut(s) 287, 366
BstF5I GGATG 1 cut(s) 524
BstFNI CGCG 1 cut(s) 587
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 2 cut(s) 111, 565
BstMBI GATC 2 cut(s) 108, 562
BstMWI GCNNNNNNNGC 7 cut(s) 78, 200, 383, 466, 475, 515, 584
BstNSI RCATGY 1 cut(s) 198
BstSCI CCNGG 5 cut(s) 48, 66, 67, 131, 381
BstSFI CTRYAG 1 cut(s) 43
BstUI CGCG 1 cut(s) 587
BstV1I GCAGC 2 cut(s) 37, 541
BstX2I RGATCY 1 cut(s) 562
BstYI RGATCY 1 cut(s) 562
BsuI GTATCC 1 cut(s) 190
BsuRI GGCC 4 cut(s) 66, 81, 377, 381
BtsCI GGATG 1 cut(s) 524
BtsIMutI CAGTG 1 cut(s) 284
BveI ACCTGC 1 cut(s) 529
Cac8I GCNNGC 5 cut(s) 166, 196, 338, 379, 480
CfoI GCGC 1 cut(s) 25
Cfr10I RCCGGY 1 cut(s) 377
Cfr13I GGNCC 4 cut(s) 65, 80, 375, 380
Cfr9I CCCGGG 1 cut(s) 67
CseI GACGC 2 cut(s) 253, 590
Csp6I GTAC 1 cut(s) 40
CviAII CATG 3 cut(s) 14, 195, 542
CviJI RGCY 9 cut(s) 48, 66, 81, 99, 164, 370, 377, 381, 386
CviKI_1 RGCY 9 cut(s) 48, 66, 81, 99, 164, 370, 377, 381, 386
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 2 cut(s) 287, 366
DpnI GATC 2 cut(s) 110, 564
DpnII GATC 2 cut(s) 108, 562
DriI GACNNNNNGTC 1 cut(s) 600
Eam1104I CTCTTC 1 cut(s) 15
Eam1105I GACNNNNNGTC 1 cut(s) 600
EarI CTCTTC 1 cut(s) 15
Ecl136II GAGCTC 1 cut(s) 370
Eco130I CCWWGG 3 cut(s) 93, 159, 215
Eco24I GRGCYC 1 cut(s) 372
Eco53kI GAGCTC 1 cut(s) 370
Eco88I CYCGRG 1 cut(s) 67
EcoICRI GAGCTC 1 cut(s) 370
EcoRI GAATTC 1 cut(s) 409
EcoT14I CCWWGG 3 cut(s) 93, 159, 215
EcoT38I GRGCYC 1 cut(s) 372
ErhI CCWWGG 3 cut(s) 93, 159, 215
FaeI CATG 3 cut(s) 17, 198, 545
FaiI YATR 6 cut(s) 15, 30, 143, 196, 249, 543
FaqI GGGAC 1 cut(s) 426
FatI CATG 3 cut(s) 13, 194, 541
FauI CCCGC 1 cut(s) 487
Fnu4HI GCNGC 2 cut(s) 26, 555
FokI GGATG 1 cut(s) 511
FriOI GRGCYC 1 cut(s) 372
FseI GGCCGGCC 1 cut(s) 381
Fsp4HI GCNGC 2 cut(s) 26, 555
FspBI CTAG 5 cut(s) 216, 231, 255, 534, 558
GlaI GCGC 1 cut(s) 24
GluI GCNGC 2 cut(s) 26, 555
HaeIII GGCC 4 cut(s) 66, 81, 377, 381
HapII CCGG 6 cut(s) 49, 68, 118, 132, 378, 383
HgaI GACGC 2 cut(s) 253, 590
HhaI GCGC 1 cut(s) 25
Hin1II CATG 3 cut(s) 17, 198, 545
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HincII GTYRAC 1 cut(s) 625
HindII GTYRAC 1 cut(s) 625
HinfI GANTC 5 cut(s) 7, 75, 581, 595, 613
HpaII CCGG 6 cut(s) 49, 68, 118, 132, 378, 383
Hpy166II GTNNAC 1 cut(s) 625
Hpy188I TCNGA 4 cut(s) 104, 274, 367, 612
Hpy188III TCNNGA 1 cut(s) 617
Hpy8I GTNNAC 1 cut(s) 625
Hpy99I CGWCG 2 cut(s) 88, 606
HpyAV CCTTC 1 cut(s) 219
HpyCH4III ACNGT 2 cut(s) 270, 454
HpyCH4V TGCA 4 cut(s) 227, 496, 518, 524
HpyF10VI GCNNNNNNNGC 7 cut(s) 78, 200, 383, 466, 475, 515, 584
HpyF3I CTNAG 2 cut(s) 287, 366
Hsp92II CATG 3 cut(s) 17, 198, 545
HspAI GCGC 1 cut(s) 23
KroI GCCGGC 1 cut(s) 377
KroNI GCCGGC 1 cut(s) 379
Kzo9I GATC 2 cut(s) 108, 562
LmnI GCTCC 2 cut(s) 150, 538
Lsp1109I GCAGC 2 cut(s) 37, 541
LweI GCATC 1 cut(s) 533
MaeI CTAG 5 cut(s) 216, 231, 255, 534, 558
MaeIII GTNAC 1 cut(s) 57
MalI GATC 2 cut(s) 110, 564
MboI GATC 2 cut(s) 108, 562
MboII GAAGA 1 cut(s) 340
MfeI CAATTG 3 cut(s) 112, 303, 504
MflI RGATCY 1 cut(s) 562
MhlI GDGCHC 1 cut(s) 372
MluCI AATT 5 cut(s) 112, 303, 409, 464, 504
MlyI GAGTC 3 cut(s) 84, 575, 589
MmeI TCCRAC 1 cut(s) 417
MnlI CCTC 1 cut(s) 98
MroNI GCCGGC 1 cut(s) 377
MroXI GAANNNNTTC 1 cut(s) 355
MslI CAYNNNNRTG 1 cut(s) 345
MspA1I CMGCKG 1 cut(s) 482
MspI CCGG 6 cut(s) 49, 68, 118, 132, 378, 383
MspR9I CCNGG 5 cut(s) 50, 68, 69, 133, 383
MunI CAATTG 3 cut(s) 112, 303, 504
Mva1269I GAATGC 1 cut(s) 606
MvnI CGCG 1 cut(s) 587
MwoI GCNNNNNNNGC 7 cut(s) 78, 200, 383, 466, 475, 515, 584
NaeI GCCGGC 1 cut(s) 379
NciI CCSGG 5 cut(s) 50, 68, 69, 133, 383
NdeII GATC 2 cut(s) 108, 562
NgoMIV GCCGGC 1 cut(s) 377
NlaIII CATG 3 cut(s) 17, 198, 545
NmuCI GTSAC 1 cut(s) 57
NspI RCATGY 1 cut(s) 198
PaeI GCATGC 1 cut(s) 198
PaqCI CACCTGC 1 cut(s) 529
PcsI WCGNNNNNNNCGW 1 cut(s) 624
PctI GAATGC 1 cut(s) 606
PdiI GCCGGC 1 cut(s) 379
PdmI GAANNNNTTC 1 cut(s) 355
PfeI GAWTC 1 cut(s) 613
PkrI GCNGC 2 cut(s) 27, 556
PleI GAGTC 3 cut(s) 83, 575, 589
PpsI GAGTC 3 cut(s) 83, 575, 589
Psp124BI GAGCTC 1 cut(s) 372
PspPI GGNCC 4 cut(s) 65, 80, 375, 380
PsrI GAACNNNNNNTAC 2 cut(s) 26, 58
PsuI RGATCY 1 cut(s) 562
RigI GGCCGGCC 1 cut(s) 381
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
RseI CAYNNNNRTG 1 cut(s) 345
SacI GAGCTC 1 cut(s) 372
SatI GCNGC 2 cut(s) 26, 555
Sau3AI GATC 2 cut(s) 108, 562
Sau96I GGNCC 4 cut(s) 65, 80, 375, 380
ScaI AGTACT 1 cut(s) 41
SchI GAGTC 3 cut(s) 84, 575, 589
ScrFI CCNGG 5 cut(s) 50, 68, 69, 133, 383
SduI GDGCHC 1 cut(s) 372
SetI ASST 5 cut(s) 142, 232, 256, 372, 523
SfaNI GCATC 1 cut(s) 533
SfcI CTRYAG 1 cut(s) 43
SmaI CCCGGG 1 cut(s) 69
SmiMI CAYNNNNRTG 1 cut(s) 345
SphI GCATGC 1 cut(s) 198
SrfI GCCCGGGC 1 cut(s) 69
Sse9I AATT 5 cut(s) 112, 303, 409, 464, 504
SsiI CCGC 2 cut(s) 480, 585
SspMI CTAG 5 cut(s) 216, 231, 255, 534, 558
SstI GAGCTC 1 cut(s) 372
StyD4I CCNGG 5 cut(s) 48, 66, 67, 131, 381
StyI CCWWGG 3 cut(s) 93, 159, 215
TaaI ACNGT 2 cut(s) 270, 454
TaqI TCGA 3 cut(s) 326, 462, 618
TasI AATT 5 cut(s) 112, 303, 409, 464, 504
TatI WGTACW 1 cut(s) 39
TfiI GAWTC 1 cut(s) 613
TscAI CASTG 1 cut(s) 291
TseFI GTSAC 1 cut(s) 57
TseI GCWGC 2 cut(s) 25, 554
Tsp45I GTSAC 1 cut(s) 57
TspDTI ATGAA 1 cut(s) 348
TspGWI ACGGA 1 cut(s) 428
TspMI CCCGGG 1 cut(s) 67
TspRI CASTG 1 cut(s) 291
XapI RAATTY 1 cut(s) 409
XceI RCATGY 1 cut(s) 198
XmaI CCCGGG 1 cut(s) 67
XmaJI CCTAGG 1 cut(s) 215
XmnI GAANNNNTTC 1 cut(s) 355
XspI CTAG 5 cut(s) 216, 231, 255, 534, 558
ZrmI AGTACT 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.