FvH4_2g23281

Proline-rich nuclear receptor coactivator motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0011970
Physical Location & Seq
Reverse (-)
19057399 .. 19058410
1012 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g23281.t1

Sequence Viewer

Length: 804 bp
ATGGAGACCCTTCTTGTTGTGGAGCATAAGAACCAGTACTACAGCCGGGGAAAGCAACATGGGCCGGGCCGTGTTGGGCCGACGCCGTCCAAGAGCTTCCGAGGGATCAATTGCCGGACTTTCCAATCCGGCTCAGGTATTCTGCCAACCCCTCCTCCATTGAAGTCGAGTTCTACTACTACTCCTGTTTCGAAGAAACCATCCCCTTCTGTTTATTCACCCAAAACACCTAGCGCTGATTCGCAGTTTGATGCCAAGACTAAATCTTACTCTGATAGTAAAGTAATGAGTAGAAACAATGGGAGAACCAACCCGATTCCTATCGATGCCCGAAACCTGAAGAAAGAGAAGCCTTTTAATGAGGGTTTTTCGTTTTCTGAACTCTGGGCTGGCCCTGCTTACTCAAACTCTCCACCACCTAGTTCGTTGCCAATACCCAAATTTTCAGTTCGGCCAAAGAGGACCGTGTCGCTTGAATTGCCTAGCTCAGTTTCTGCTATTGAAATGCACCCAATTGCCAAGTCTGCACCCGCGTCCCCAACCAGAGAGCATAGCTCCTCCAAAAGAGATCTCTTTCACAATGCGGACTCAGCCACTAGGACTCTGCGTCGCATCCTCAACCTTGATGCATGGTTGTGGCAGGTTGATGTTCTCTGCATTAGTGGTGGTGTTTTGAAGGGGAAGGTGTGGTACTTGGTTTGGCAAGATTGGCATTGTATGGTAATTGTTATGGTGTTAGCTCTTTCTTATGGTTCTCACAAACAGCAGCCTTGGTTGTGGCGTGTCAATGGTCTCTGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNRC

Protein Analysis

268

Amino Acids

29.71

Weight (kDa)

10.04

Isoelectric Point (pI)

57.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNRC PF15365 129 - 148 3.3e-07 Proline-rich nuclear receptor coactivator motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011970)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02715 AT4G02715
fragaria_vesca FvH4_2g23281
malus_domestica MD03G1262100.v1.1 MD11G1282800.v1.1
prunus_persica Prupe.8G238400_v2.0.a1
pyrus_communis pycom03g20990 pycom11g25050
rosa_chinensis RchiOBHm_Chr6g0290651
rosa_laevigata RLG00000012187
rosa_multiflora Rmu_co8113914.1_g000001 Rmu_sc0006791.1_g000005
rosa_roxburghii Rroxscaffold_7G00176830
rosa_rugosa Rorug06G0214000
rosa_samantha Rh6AG324500 Rh6BG332100 Rh6CG337800 Rh6DG325200
rosa_wichuraiana Rw6G028170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 631
AccII CGCG 1 cut(s) 533
AciI CCGC 2 cut(s) 531, 584
AclWI GGATC 1 cut(s) 113
AcoI YGGCCR 1 cut(s) 452
AcsI RAATTY 1 cut(s) 440
AcuI CTGAAG 1 cut(s) 359
AcyI GRCGYC 1 cut(s) 83
AfaI GTAC 2 cut(s) 38, 692
AfeI AGCGCT 1 cut(s) 235
AgsI TTSAA 4 cut(s) 163, 476, 503, 676
AhdI GACNNNNNGTC 1 cut(s) 606
AluBI AGCT 4 cut(s) 96, 486, 555, 740
AluI AGCT 4 cut(s) 96, 486, 555, 740
Alw26I GTCTC 1 cut(s) 797
AlwI GGATC 1 cut(s) 113
AlwNI CAGNNNCTG 1 cut(s) 494
Aor51HI AGCGCT 1 cut(s) 235
AoxI GGCC 5 cut(s) 62, 67, 77, 391, 452
ApeKI GCWGC 1 cut(s) 766
ApoI RAATTY 1 cut(s) 440
AspLEI GCGC 1 cut(s) 236
AspS9I GGNCC 5 cut(s) 62, 67, 77, 392, 462
AsuC2I CCSGG 2 cut(s) 47, 66
AsuHPI GGTGA 1 cut(s) 210
AsuII TTCGAA 1 cut(s) 191
AvaII GGWCC 1 cut(s) 462
BarI GAAGNNNNNNTAC 2 cut(s) 674, 706
BbvI GCAGC 1 cut(s) 778
BccI CCATC 1 cut(s) 208
BceAI ACGGC 2 cut(s) 54, 70
BcnI CCSGG 2 cut(s) 47, 66
BcoDI GTCTC 1 cut(s) 797
BfaI CTAG 4 cut(s) 231, 420, 483, 597
BfmI CTRYAG 1 cut(s) 40
BfoI RGCGCY 1 cut(s) 237
BfuAI ACCTGC 1 cut(s) 631
BglII AGATCT 1 cut(s) 568
BisI GCNGC 1 cut(s) 767
BlsI GCNGC 1 cut(s) 768
BmcAI AGTACT 1 cut(s) 38
Bme1390I CCNGG 2 cut(s) 47, 66
Bme18I GGWCC 1 cut(s) 462
BmeRI GACNNNNNGTC 1 cut(s) 606
BmgT120I GGNCC 5 cut(s) 62, 67, 77, 392, 462
BmrFI CCNGG 2 cut(s) 47, 66
BmsI GCATC 4 cut(s) 241, 316, 616, 621
BplI GAGNNNNNCTC 2 cut(s) 539, 571
Bpu10I CCTNAGC 1 cut(s) 133
Bpu14I TTCGAA 1 cut(s) 191
BpuMI CCSGG 2 cut(s) 47, 66
Bsa29I ATCGAT 1 cut(s) 324
BsaBI GATNNNNATC 1 cut(s) 320
BsaHI GRCGYC 1 cut(s) 83
BsaI GGTCTC 1 cut(s) 797
BsaJI CCNNGG 3 cut(s) 46, 100, 770
BsaXI ACNNNNNCTCC 4 cut(s) 139, 166, 169, 196
Bse1I ACTGG 1 cut(s) 34
Bse8I GATNNNNATC 1 cut(s) 320
BseCI ATCGAT 1 cut(s) 324
BseDI CCNNGG 3 cut(s) 46, 100, 770
BseGI GGATG 2 cut(s) 200, 612
BseJI GATNNNNATC 1 cut(s) 320
BseMII CTCAG 3 cut(s) 147, 501, 603
BseNI ACTGG 1 cut(s) 34
BseRI GAGGAG 2 cut(s) 144, 547
BseXI GCAGC 1 cut(s) 778
BsgI GTGCAG 1 cut(s) 510
Bsh1236I CGCG 1 cut(s) 533
BshFI GGCC 5 cut(s) 64, 69, 79, 393, 454
BshVI ATCGAT 1 cut(s) 324
BsiSI CCGG 4 cut(s) 46, 65, 115, 129
BslFI GGGAC 1 cut(s) 520
BsmAI GTCTC 1 cut(s) 797
BsmFI GGGAC 1 cut(s) 520
BsnI GGCC 5 cut(s) 64, 69, 79, 393, 454
Bso31I GGTCTC 1 cut(s) 797
Bsp119I TTCGAA 1 cut(s) 191
Bsp143I GATC 2 cut(s) 105, 568
BspACI CCGC 2 cut(s) 531, 584
BspANI GGCC 5 cut(s) 64, 69, 79, 393, 454
BspCNI CTCAG 3 cut(s) 146, 500, 602
BspDI ATCGAT 1 cut(s) 324
BspFNI CGCG 1 cut(s) 533
BspMI ACCTGC 1 cut(s) 631
BspPI GGATC 1 cut(s) 113
BspT104I TTCGAA 1 cut(s) 191
BspTNI GGTCTC 1 cut(s) 797
BsrI ACTGG 1 cut(s) 34
BssECI CCNNGG 3 cut(s) 46, 100, 770
BssMI GATC 2 cut(s) 105, 568
BssNI GRCGYC 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 770
Bst4CI ACNGT 1 cut(s) 466
BstACI GRCGYC 1 cut(s) 83
BstBI TTCGAA 1 cut(s) 191
BstC8I GCNNGC 1 cut(s) 391
BstDEI CTNAG 3 cut(s) 133, 487, 589
BstF5I GGATG 2 cut(s) 200, 612
BstFNI CGCG 1 cut(s) 533
BstH2I RGCGCY 1 cut(s) 237
BstHHI GCGC 1 cut(s) 236
BstKTI GATC 2 cut(s) 108, 571
BstMAI GTCTC 1 cut(s) 797
BstMBI GATC 2 cut(s) 105, 568
BstMWI GCNNNNNNNGC 6 cut(s) 61, 395, 478, 524, 590, 709
BstSCI CCNGG 2 cut(s) 45, 64
BstSFI CTRYAG 1 cut(s) 40
BstUI CGCG 1 cut(s) 533
BstV1I GCAGC 1 cut(s) 778
BstX2I RGATCY 1 cut(s) 568
BstYI RGATCY 1 cut(s) 568
Bsu15I ATCGAT 1 cut(s) 324
BsuRI GGCC 5 cut(s) 64, 69, 79, 393, 454
BsuTUI ATCGAT 1 cut(s) 324
BtsCI GGATG 2 cut(s) 200, 612
BveI ACCTGC 1 cut(s) 631
Cac8I GCNNGC 1 cut(s) 391
CaiI CAGNNNCTG 1 cut(s) 494
CfoI GCGC 1 cut(s) 236
Cfr13I GGNCC 5 cut(s) 62, 67, 77, 392, 462
ClaI ATCGAT 1 cut(s) 324
CseI GACGC 3 cut(s) 91, 522, 596
Csp6I GTAC 2 cut(s) 37, 691
CviAII CATG 2 cut(s) 59, 630
CviQI GTAC 2 cut(s) 37, 691
DdeI CTNAG 3 cut(s) 133, 487, 589
DpnI GATC 2 cut(s) 107, 570
DpnII GATC 2 cut(s) 105, 568
DriI GACNNNNNGTC 1 cut(s) 606
EaeI YGGCCR 1 cut(s) 452
Eam1105I GACNNNNNGTC 1 cut(s) 606
Eco130I CCWWGG 1 cut(s) 770
Eco31I GGTCTC 1 cut(s) 797
Eco47I GGWCC 1 cut(s) 462
Eco47III AGCGCT 1 cut(s) 235
Eco57I CTGAAG 1 cut(s) 359
EcoT14I CCWWGG 1 cut(s) 770
EcoT22I ATGCAT 1 cut(s) 631
ErhI CCWWGG 1 cut(s) 770
FaeI CATG 2 cut(s) 62, 633
FaiI YATR 7 cut(s) 27, 60, 552, 631, 719, 731, 750
FaqI GGGAC 1 cut(s) 520
FatI CATG 2 cut(s) 58, 629
FauI CCCGC 1 cut(s) 538
Fnu4HI GCNGC 1 cut(s) 767
FokI GGATG 2 cut(s) 187, 599
Fsp4HI GCNGC 1 cut(s) 767
FspBI CTAG 4 cut(s) 231, 420, 483, 597
GlaI GCGC 1 cut(s) 235
GluI GCNGC 1 cut(s) 767
HaeII RGCGCY 1 cut(s) 237
HaeIII GGCC 5 cut(s) 64, 69, 79, 393, 454
HapII CCGG 4 cut(s) 46, 65, 115, 129
HgaI GACGC 3 cut(s) 91, 522, 596
HhaI GCGC 1 cut(s) 236
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 2 cut(s) 62, 633
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HinfI GANTC 4 cut(s) 239, 316, 587, 601
HpaII CCGG 4 cut(s) 46, 65, 115, 129
HphI GGTGA 1 cut(s) 210
Hpy188I TCNGA 3 cut(s) 101, 274, 379
Hpy99I CGWCG 2 cut(s) 85, 612
HpyAV CCTTC 4 cut(s) 20, 216, 670, 676
HpyCH4III ACNGT 1 cut(s) 466
HpyCH4V TGCA 4 cut(s) 508, 527, 629, 657
HpyF10VI GCNNNNNNNGC 6 cut(s) 61, 395, 478, 524, 590, 709
HpyF3I CTNAG 3 cut(s) 133, 487, 589
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 2 cut(s) 62, 633
HspAI GCGC 1 cut(s) 234
Kzo9I GATC 2 cut(s) 105, 568
LmnI GCTCC 2 cut(s) 22, 560
Lsp1109I GCAGC 1 cut(s) 778
LweI GCATC 4 cut(s) 241, 316, 616, 621
MaeI CTAG 4 cut(s) 231, 420, 483, 597
MalI GATC 2 cut(s) 107, 570
MboI GATC 2 cut(s) 105, 568
MboII GAAGA 2 cut(s) 205, 352
MfeI CAATTG 2 cut(s) 109, 513
MflI RGATCY 1 cut(s) 568
MluCI AATT 5 cut(s) 109, 440, 476, 513, 723
MlyI GAGTC 2 cut(s) 581, 595
MnlI CCTC 7 cut(s) 95, 162, 165, 355, 453, 568, 626
Mph1103I ATGCAT 1 cut(s) 631
MseI TTAA 1 cut(s) 357
MslI CAYNNNNRTG 1 cut(s) 634
MspI CCGG 4 cut(s) 46, 65, 115, 129
MspR9I CCNGG 2 cut(s) 47, 66
MunI CAATTG 2 cut(s) 109, 513
MvnI CGCG 1 cut(s) 533
MwoI GCNNNNNNNGC 6 cut(s) 61, 395, 478, 524, 590, 709
NciI CCSGG 2 cut(s) 47, 66
NdeII GATC 2 cut(s) 105, 568
NlaIII CATG 2 cut(s) 62, 633
NsiI ATGCAT 1 cut(s) 631
NspV TTCGAA 1 cut(s) 191
PfeI GAWTC 2 cut(s) 239, 316
PflFI GACNNNGTC 2 cut(s) 85, 466
PkrI GCNGC 1 cut(s) 768
PleI GAGTC 2 cut(s) 581, 595
PpsI GAGTC 2 cut(s) 581, 595
PspPI GGNCC 5 cut(s) 62, 67, 77, 392, 462
PsrI GAACNNNNNNTAC 2 cut(s) 23, 55
PstNI CAGNNNCTG 1 cut(s) 494
PsuI RGATCY 1 cut(s) 568
PsyI GACNNNGTC 2 cut(s) 85, 466
RsaI GTAC 2 cut(s) 38, 692
RsaNI GTAC 2 cut(s) 37, 691
RseI CAYNNNNRTG 1 cut(s) 634
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 1 cut(s) 767
Sau3AI GATC 2 cut(s) 105, 568
Sau96I GGNCC 5 cut(s) 62, 67, 77, 392, 462
ScaI AGTACT 1 cut(s) 38
SchI GAGTC 2 cut(s) 581, 595
ScrFI CCNGG 2 cut(s) 47, 66
SfaNI GCATC 4 cut(s) 241, 316, 616, 621
SfcI CTRYAG 1 cut(s) 40
SfuI TTCGAA 1 cut(s) 191
SinI GGWCC 1 cut(s) 462
SmiMI CAYNNNNRTG 1 cut(s) 634
Sse9I AATT 5 cut(s) 109, 440, 476, 513, 723
SsiI CCGC 2 cut(s) 531, 584
SspMI CTAG 4 cut(s) 231, 420, 483, 597
StyD4I CCNGG 2 cut(s) 45, 64
StyI CCWWGG 1 cut(s) 770
TaaI ACNGT 1 cut(s) 466
TaqI TCGA 3 cut(s) 167, 191, 324
TasI AATT 5 cut(s) 109, 440, 476, 513, 723
TatI WGTACW 1 cut(s) 36
TfiI GAWTC 2 cut(s) 239, 316
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TseI GCWGC 1 cut(s) 766
Tth111I GACNNNGTC 2 cut(s) 85, 466
VpaK11BI GGWCC 1 cut(s) 462
XapI RAATTY 1 cut(s) 440
XspI CTAG 4 cut(s) 231, 420, 483, 597
ZrmI AGTACT 1 cut(s) 38
Zsp2I ATGCAT 1 cut(s) 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.