Rroxscaffold_7G00176830

Proline-rich nuclear receptor coactivator motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0011970
Physical Location & Seq
Forward (+)
16450755 .. 16451432
678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00176830.1

Sequence Viewer

Length: 678 bp
ATGGAGACCCTTCTTGTTGTGGAGCATAAGAACCAGTACTACAGCCGGGTCAAGGCACATGGGCCGGGCCGGGTCGGACCCTCGCCGTCCAAGAGCTTCCGAGGGATCAATTGCCGGACTTTCCAATCCGGCACAGGTATACTACCAACCCCTCCTCCAATAAAGTCGTCGTCTTCTGCTACTACTACTAGTACTCCTGTTTCGAAAAAACCATGCCCCCCTTCTGCTTATTCACCCAAGACACCTACACCTAGTGCAGATTCACAGTTTGATGCTAAGCCTAAATTTTACTCTGACAGTAAAGCTGTGAGTAGAAGCAATGTGAGAACCAACCCAATTCCTATCAACGCCCGAAACCTGAAGAAAGAGAAGCCTTTTAATGAGAGTTTTTCATTTTCGGAACTCTGGGCTGGTCCTGCTTACTCAAACTCTCCCCCACCTAGTTCTTTGCCAATACCCAAATTTTCAGTTCGGCCAAAGAGAACCGTGTCGCTTGAATTGCCTAGCTCAGTTTCTGCTATTGAAATGCACCCAATTGCCAAGTCTGCACCCCCATCCCCGACCAGAGAGCATAGCTCTTCCAAAGAGATCTCTTACACAATGCTGACTCAGCCACTAGGACTCTGCGTCGCATCCTCAACCTGGATGTTGACGACGAATAAGGGCAGGGAGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNRC

Protein Analysis

225

Amino Acids

24.4

Weight (kDa)

10.01

Isoelectric Point (pI)

57.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNRC PF15365 136 - 155 2.6e-07 Proline-rich nuclear receptor coactivator motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011970)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02715 AT4G02715
fragaria_vesca FvH4_2g23281
malus_domestica MD03G1262100.v1.1 MD11G1282800.v1.1
prunus_persica Prupe.8G238400_v2.0.a1
pyrus_communis pycom03g20990 pycom11g25050
rosa_chinensis RchiOBHm_Chr6g0290651
rosa_laevigata RLG00000012187
rosa_multiflora Rmu_co8113914.1_g000001 Rmu_sc0006791.1_g000005
rosa_roxburghii Rroxscaffold_7G00176830
rosa_rugosa Rorug06G0214000
rosa_samantha Rh6AG324500 Rh6BG332100 Rh6CG337800 Rh6DG325200
rosa_wichuraiana Rw6G028170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 139
AclWI GGATC 1 cut(s) 113
AcoI YGGCCR 1 cut(s) 473
AcsI RAATTY 2 cut(s) 284, 461
AcuI CTGAAG 1 cut(s) 380
AdeI CACNNNGTG 1 cut(s) 254
AfaI GTAC 2 cut(s) 38, 193
AfiI CCNNNNNNNGG 2 cut(s) 52, 642
AgsI TTSAA 2 cut(s) 497, 524
AhdI GACNNNNNGTC 1 cut(s) 626
AhlI ACTAGT 1 cut(s) 188
AjnI CCWGG 1 cut(s) 641
AluBI AGCT 4 cut(s) 96, 305, 507, 576
AluI AGCT 4 cut(s) 96, 305, 507, 576
Alw21I GWGCWC 1 cut(s) 675
AlwI GGATC 1 cut(s) 113
AlwNI CAGNNNCTG 1 cut(s) 515
AoxI GGCC 3 cut(s) 62, 67, 473
ApoI RAATTY 2 cut(s) 284, 461
AspS9I GGNCC 4 cut(s) 62, 67, 77, 413
AsuC2I CCSGG 3 cut(s) 47, 66, 71
AsuHPI GGTGA 1 cut(s) 225
AsuII TTCGAA 1 cut(s) 203
AvaII GGWCC 2 cut(s) 77, 413
BbsI GAAGAC 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 675
BccI CCATC 1 cut(s) 562
BceAI ACGGC 1 cut(s) 70
BciT130I CCWGG 1 cut(s) 643
BcnI CCSGG 3 cut(s) 47, 66, 71
BcuI ACTAGT 1 cut(s) 188
BfaI CTAG 6 cut(s) 189, 252, 441, 504, 617, 676
BfmI CTRYAG 1 cut(s) 40
BglII AGATCT 1 cut(s) 588
BlpI GCTNAGC 1 cut(s) 276
BmcAI AGTACT 2 cut(s) 38, 193
Bme1390I CCNGG 4 cut(s) 47, 66, 71, 643
Bme18I GGWCC 2 cut(s) 77, 413
BmeRI GACNNNNNGTC 1 cut(s) 626
BmgT120I GGNCC 4 cut(s) 62, 67, 77, 413
BmiI GGNNCC 1 cut(s) 79
BmrFI CCNGG 4 cut(s) 47, 66, 71, 643
BmsI GCATC 2 cut(s) 262, 641
BpiI GAAGAC 1 cut(s) 165
BplI GAGNNNNNCTC 2 cut(s) 560, 592
Bpu1102I GCTNAGC 1 cut(s) 276
Bpu14I TTCGAA 1 cut(s) 203
BpuMI CCSGG 3 cut(s) 47, 66, 71
BsaJI CCNNGG 1 cut(s) 100
BsaXI ACNNNNNCTCC 4 cut(s) 139, 169, 178, 208
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 642
Bse1I ACTGG 1 cut(s) 34
Bse3DI GCAATG 1 cut(s) 325
BseBI CCWGG 1 cut(s) 643
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 3 cut(s) 554, 632, 651
BseLI CCNNNNNNNGG 2 cut(s) 52, 642
BseMI GCAATG 1 cut(s) 325
BseMII CTCAG 2 cut(s) 522, 623
BseNI ACTGG 1 cut(s) 34
BseRI GAGGAG 1 cut(s) 144
BsgI GTGCAG 2 cut(s) 276, 531
BshFI GGCC 3 cut(s) 64, 69, 475
BsiHKAI GWGCWC 1 cut(s) 675
BsiSI CCGG 5 cut(s) 46, 65, 70, 115, 129
BslI CCNNNNNNNGG 2 cut(s) 52, 642
BsnI GGCC 3 cut(s) 64, 69, 475
Bsp119I TTCGAA 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 675
Bsp143I GATC 2 cut(s) 105, 588
Bsp1720I GCTNAGC 1 cut(s) 276
BspANI GGCC 3 cut(s) 64, 69, 475
BspCNI CTCAG 2 cut(s) 521, 622
BspLI GGNNCC 1 cut(s) 79
BspPI GGATC 1 cut(s) 113
BspQI GCTCTTC 1 cut(s) 583
BspT104I TTCGAA 1 cut(s) 203
BsrDI GCAATG 1 cut(s) 325
BsrI ACTGG 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 2 cut(s) 105, 588
BssNAI GTATAC 1 cut(s) 140
Bst1107I GTATAC 1 cut(s) 140
Bst2UI CCWGG 1 cut(s) 643
Bst4CI ACNGT 3 cut(s) 267, 299, 487
Bst6I CTCTTC 1 cut(s) 583
BstBI TTCGAA 1 cut(s) 203
BstDEI CTNAG 3 cut(s) 276, 508, 609
BstF5I GGATG 3 cut(s) 554, 632, 651
BstKTI GATC 2 cut(s) 108, 591
BstMBI GATC 2 cut(s) 105, 588
BstMWI GCNNNNNNNGC 4 cut(s) 416, 499, 545, 610
BstNI CCWGG 1 cut(s) 643
BstSCI CCNGG 4 cut(s) 45, 64, 69, 641
BstSFI CTRYAG 1 cut(s) 40
BstV2I GAAGAC 1 cut(s) 165
BstX2I RGATCY 1 cut(s) 588
BstYI RGATCY 1 cut(s) 588
BstZ17I GTATAC 1 cut(s) 140
BsuRI GGCC 3 cut(s) 64, 69, 475
BtsCI GGATG 3 cut(s) 554, 632, 651
CaiI CAGNNNCTG 1 cut(s) 515
Cfr13I GGNCC 4 cut(s) 62, 67, 77, 413
CseI GACGC 1 cut(s) 616
Csp6I GTAC 2 cut(s) 37, 192
CviAII CATG 2 cut(s) 59, 213
CviQI GTAC 2 cut(s) 37, 192
DdeI CTNAG 3 cut(s) 276, 508, 609
DpnI GATC 2 cut(s) 107, 590
DpnII GATC 2 cut(s) 105, 588
DraIII CACNNNGTG 1 cut(s) 254
DriI GACNNNNNGTC 1 cut(s) 626
EaeI YGGCCR 1 cut(s) 473
Eam1104I CTCTTC 1 cut(s) 583
Eam1105I GACNNNNNGTC 1 cut(s) 626
EarI CTCTTC 1 cut(s) 583
Eco47I GGWCC 2 cut(s) 77, 413
Eco57I CTGAAG 1 cut(s) 380
EcoRII CCWGG 1 cut(s) 641
FaeI CATG 2 cut(s) 62, 216
FaiI YATR 5 cut(s) 27, 60, 140, 214, 573
FatI CATG 2 cut(s) 58, 212
FblI GTMKAC 1 cut(s) 139
FokI GGATG 3 cut(s) 541, 619, 658
FspBI CTAG 6 cut(s) 189, 252, 441, 504, 617, 676
HaeIII GGCC 3 cut(s) 64, 69, 475
HapII CCGG 5 cut(s) 46, 65, 70, 115, 129
HgaI GACGC 1 cut(s) 616
Hin1II CATG 2 cut(s) 62, 216
HincII GTYRAC 1 cut(s) 651
HindII GTYRAC 1 cut(s) 651
HinfI GANTC 3 cut(s) 260, 607, 621
HpaII CCGG 5 cut(s) 46, 65, 70, 115, 129
HphI GGTGA 1 cut(s) 225
Hpy166II GTNNAC 2 cut(s) 140, 651
Hpy188I TCNGA 4 cut(s) 77, 101, 295, 400
Hpy8I GTNNAC 2 cut(s) 140, 651
Hpy99I CGWCG 3 cut(s) 172, 632, 658
HpyAV CCTTC 2 cut(s) 20, 231
HpyCH4III ACNGT 3 cut(s) 267, 299, 487
HpyCH4V TGCA 3 cut(s) 257, 529, 548
HpyF10VI GCNNNNNNNGC 4 cut(s) 416, 499, 545, 610
HpyF3I CTNAG 3 cut(s) 276, 508, 609
Hsp92II CATG 2 cut(s) 62, 216
Kzo9I GATC 2 cut(s) 105, 588
LguI GCTCTTC 1 cut(s) 583
LmnI GCTCC 2 cut(s) 22, 670
LweI GCATC 2 cut(s) 262, 641
MaeI CTAG 6 cut(s) 189, 252, 441, 504, 617, 676
MalI GATC 2 cut(s) 107, 590
MboI GATC 2 cut(s) 105, 588
MboII GAAGA 3 cut(s) 165, 373, 570
MfeI CAATTG 2 cut(s) 109, 534
MflI RGATCY 1 cut(s) 588
MhlI GDGCHC 1 cut(s) 675
MluCI AATT 6 cut(s) 109, 284, 336, 461, 497, 534
MlyI GAGTC 2 cut(s) 601, 615
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 5 cut(s) 91, 95, 162, 165, 646
MseI TTAA 1 cut(s) 378
MspI CCGG 5 cut(s) 46, 65, 70, 115, 129
MspR9I CCNGG 4 cut(s) 47, 66, 71, 643
MunI CAATTG 2 cut(s) 109, 534
MvaI CCWGG 1 cut(s) 643
MwoI GCNNNNNNNGC 4 cut(s) 416, 499, 545, 610
NciI CCSGG 3 cut(s) 47, 66, 71
NdeII GATC 2 cut(s) 105, 588
NlaIII CATG 2 cut(s) 62, 216
NlaIV GGNNCC 1 cut(s) 79
NspV TTCGAA 1 cut(s) 203
PciSI GCTCTTC 1 cut(s) 583
PfeI GAWTC 1 cut(s) 260
PleI GAGTC 2 cut(s) 601, 615
PpsI GAGTC 2 cut(s) 601, 615
Psp6I CCWGG 1 cut(s) 641
PspGI CCWGG 1 cut(s) 641
PspN4I GGNNCC 1 cut(s) 79
PspPI GGNCC 4 cut(s) 62, 67, 77, 413
PsrI GAACNNNNNNTAC 2 cut(s) 23, 55
PstNI CAGNNNCTG 1 cut(s) 515
PsuI RGATCY 1 cut(s) 588
RsaI GTAC 2 cut(s) 38, 193
RsaNI GTAC 2 cut(s) 37, 192
SapI GCTCTTC 1 cut(s) 583
SaqAI TTAA 1 cut(s) 378
Sau3AI GATC 2 cut(s) 105, 588
Sau96I GGNCC 4 cut(s) 62, 67, 77, 413
ScaI AGTACT 2 cut(s) 38, 193
SchI GAGTC 2 cut(s) 601, 615
ScrFI CCNGG 4 cut(s) 47, 66, 71, 643
SduI GDGCHC 1 cut(s) 675
SfaNI GCATC 2 cut(s) 262, 641
SfcI CTRYAG 1 cut(s) 40
SfuI TTCGAA 1 cut(s) 203
SinI GGWCC 2 cut(s) 77, 413
SpeI ACTAGT 1 cut(s) 188
Sse9I AATT 6 cut(s) 109, 284, 336, 461, 497, 534
SspMI CTAG 6 cut(s) 189, 252, 441, 504, 617, 676
StyD4I CCNGG 4 cut(s) 45, 64, 69, 641
TaaI ACNGT 3 cut(s) 267, 299, 487
TaqI TCGA 1 cut(s) 203
TasI AATT 6 cut(s) 109, 284, 336, 461, 497, 534
TatI WGTACW 2 cut(s) 36, 191
TfiI GAWTC 1 cut(s) 260
Tru1I TTAA 1 cut(s) 378
Tru9I TTAA 1 cut(s) 378
TspDTI ATGAA 1 cut(s) 381
VpaK11BI GGWCC 2 cut(s) 77, 413
XapI RAATTY 2 cut(s) 284, 461
XmiI GTMKAC 1 cut(s) 139
XspI CTAG 6 cut(s) 189, 252, 441, 504, 617, 676
ZrmI AGTACT 2 cut(s) 38, 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.