MD11G1282800.v1.1

Proline-rich nuclear receptor coactivator motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0011970
Physical Location & Seq
Reverse (-)
40117345 .. 40120178
2834 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1282800.v1.1.491

Sequence Viewer

Length: 633 bp
ATGGAGACTCTTCTGGTTGTGGCGCAGCATAAGAACCAGTACTATGGCCAGGGGAAGCCACACGGGCCGGGCCAAGTCGGCCCGTCGCCGTCCAAGGACTTCCGAGGGATCAATTGCCGGACTTTCCAATCCGGGTCAGGTATACTCCCAACCCCATCCAAGGCTTGCTCTACTCCTGTATCCAAACGGGGAGCATGCTCTGGTTCTCCTCCTAGGATAACTACAACTAGTCCAAACAAGATACATACACCTAGTCCAGTTTCACAGTCTGATAGCAGAACATTGAGTAGAAGCACCCCAATTGCTATCAATGTCAACAACTCGAAGAAAGGCAAGCACTTCAATGGAAGTTTTTCATTTTCTGAGCTCTGGGCCGGCCCGGCTTACTCGAACTCTCCCCCACCGAGTTCATTGCCAATCCCCAAGTTTTCAATCCGACCCAAGAGAACCGTGTCGCTCGAATTGCCCAAGTCGCCCGCTGATATCGAAATGCACCACCCAATTGCCAAGTCTACACCCGCATCCCCAACTAGGGAGTATTCTGGGTCTTCTGCTAGAGATCTCTTTCACAATGCTGATTCCGCGACCAAGACTCTGCGTCGCATTCTGAATCTTGATGTAGACGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNRC

Protein Analysis

211

Amino Acids

22.56

Weight (kDa)

9.92

Isoelectric Point (pI)

66.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNRC PF15365 124 - 143 2.4e-07 Proline-rich nuclear receptor coactivator motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011970)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02715 AT4G02715
fragaria_vesca FvH4_2g23281
malus_domestica MD03G1262100.v1.1 MD11G1282800.v1.1
prunus_persica Prupe.8G238400_v2.0.a1
pyrus_communis pycom03g20990 pycom11g25050
rosa_chinensis RchiOBHm_Chr6g0290651
rosa_laevigata RLG00000012187
rosa_multiflora Rmu_co8113914.1_g000001 Rmu_sc0006791.1_g000005
rosa_roxburghii Rroxscaffold_7G00176830
rosa_rugosa Rorug06G0214000
rosa_samantha Rh6AG324500 Rh6BG332100 Rh6CG337800 Rh6DG325200
rosa_wichuraiana Rw6G028170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 142, 512, 621
AccII CGCG 1 cut(s) 584
AciI CCGC 3 cut(s) 477, 519, 582
AclWI GGATC 1 cut(s) 116
AcoI YGGCCR 1 cut(s) 46
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 3 cut(s) 160, 531, 532
AgsI TTSAA 2 cut(s) 343, 432
AhdI GACNNNNNGTC 1 cut(s) 597
AhlI ACTAGT 1 cut(s) 227
AjnI CCWGG 1 cut(s) 48
AluBI AGCT 1 cut(s) 367
AluI AGCT 1 cut(s) 367
Alw21I GWGCWC 1 cut(s) 369
AlwI GGATC 1 cut(s) 116
AoxI GGCC 6 cut(s) 46, 65, 70, 79, 372, 376
ApeKI GCWGC 1 cut(s) 25
Asp700I GAANNNNTTC 1 cut(s) 352
AspA2I CCTAGG 1 cut(s) 212
AspLEI GCGC 1 cut(s) 25
AspS9I GGNCC 5 cut(s) 65, 70, 80, 372, 377
AsuC2I CCSGG 3 cut(s) 69, 133, 380
AvrII CCTAGG 1 cut(s) 212
BaeI ACNNNNGTAYC 2 cut(s) 162, 195
BalI TGGCCA 1 cut(s) 48
BanII GRGCYC 1 cut(s) 369
BbsI GAAGAC 1 cut(s) 540
Bbv12I GWGCWC 1 cut(s) 369
BbvI GCAGC 1 cut(s) 37
BccI CCATC 1 cut(s) 163
BceAI ACGGC 1 cut(s) 73
BcgI CGANNNNNNTGC 2 cut(s) 394, 428
BciT130I CCWGG 1 cut(s) 50
BciVI GTATCC 1 cut(s) 190
BcnI CCSGG 3 cut(s) 69, 133, 380
BcuI ACTAGT 1 cut(s) 227
BfaI CTAG 5 cut(s) 213, 228, 252, 531, 555
BfuI GTATCC 1 cut(s) 190
BglI GCCNNNNNGGC 3 cut(s) 64, 78, 380
BglII AGATCT 1 cut(s) 559
BisI GCNGC 1 cut(s) 26
BlnI CCTAGG 1 cut(s) 212
BlsI GCNGC 1 cut(s) 27
BmcAI AGTACT 1 cut(s) 41
Bme1390I CCNGG 4 cut(s) 50, 69, 133, 380
BmeRI GACNNNNNGTC 1 cut(s) 597
BmgT120I GGNCC 5 cut(s) 65, 70, 80, 372, 377
BmrFI CCNGG 4 cut(s) 50, 69, 133, 380
BmsI GCATC 1 cut(s) 530
BpiI GAAGAC 1 cut(s) 540
BpuMI CCSGG 3 cut(s) 69, 133, 380
BsaJI CCNNGG 5 cut(s) 49, 93, 103, 159, 212
Bsc4I CCNNNNNNNGG 3 cut(s) 160, 531, 532
Bse118I RCCGGY 1 cut(s) 374
Bse1I ACTGG 2 cut(s) 37, 257
Bse3DI GCAATG 1 cut(s) 410
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 5 cut(s) 49, 93, 103, 159, 212
BseGI GGATG 2 cut(s) 155, 521
BseLI CCNNNNNNNGG 3 cut(s) 160, 531, 532
BseMI GCAATG 1 cut(s) 410
BseMII CTCAG 1 cut(s) 354
BseNI ACTGG 2 cut(s) 37, 257
BseRI GAGGAG 1 cut(s) 198
BseXI GCAGC 1 cut(s) 37
Bsh1236I CGCG 1 cut(s) 584
BshFI GGCC 6 cut(s) 48, 67, 72, 81, 374, 378
BsiHKAI GWGCWC 1 cut(s) 369
BsiSI CCGG 5 cut(s) 68, 118, 132, 375, 380
BslI CCNNNNNNNGG 3 cut(s) 160, 531, 532
BsmI GAATGC 1 cut(s) 603
BsnI GGCC 6 cut(s) 48, 67, 72, 81, 374, 378
Bsp1286I GDGCHC 1 cut(s) 369
Bsp143I GATC 2 cut(s) 108, 559
BspACI CCGC 3 cut(s) 477, 519, 582
BspANI GGCC 6 cut(s) 48, 67, 72, 81, 374, 378
BspCNI CTCAG 1 cut(s) 355
BspFNI CGCG 1 cut(s) 584
BspPI GGATC 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 410
BsrFI RCCGGY 1 cut(s) 374
BsrI ACTGG 2 cut(s) 37, 257
BssAI RCCGGY 1 cut(s) 374
BssECI CCNNGG 5 cut(s) 49, 93, 103, 159, 212
BssMI GATC 2 cut(s) 108, 559
BssNAI GTATAC 1 cut(s) 143
BssT1I CCWWGG 3 cut(s) 93, 159, 212
Bst1107I GTATAC 1 cut(s) 143
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 2 cut(s) 267, 451
Bst6I CTCTTC 1 cut(s) 15
BstC8I GCNNGC 5 cut(s) 166, 196, 335, 376, 477
BstDEI CTNAG 1 cut(s) 363
BstF5I GGATG 2 cut(s) 155, 521
BstFNI CGCG 1 cut(s) 584
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 2 cut(s) 111, 562
BstMBI GATC 2 cut(s) 108, 559
BstMWI GCNNNNNNNGC 6 cut(s) 64, 78, 380, 463, 472, 581
BstNI CCWGG 1 cut(s) 50
BstNSI RCATGY 1 cut(s) 198
BstSCI CCNGG 4 cut(s) 48, 67, 131, 378
BstUI CGCG 1 cut(s) 584
BstV1I GCAGC 1 cut(s) 37
BstV2I GAAGAC 1 cut(s) 540
BstX2I RGATCY 1 cut(s) 559
BstXI CCANNNNNNTGG 1 cut(s) 44
BstYI RGATCY 1 cut(s) 559
BstZ17I GTATAC 1 cut(s) 143
BsuI GTATCC 1 cut(s) 190
BsuRI GGCC 6 cut(s) 48, 67, 72, 81, 374, 378
BtsCI GGATG 2 cut(s) 155, 521
Cac8I GCNNGC 5 cut(s) 166, 196, 335, 376, 477
CfoI GCGC 1 cut(s) 25
Cfr10I RCCGGY 1 cut(s) 374
Cfr13I GGNCC 5 cut(s) 65, 70, 80, 372, 377
CseI GACGC 1 cut(s) 587
Csp6I GTAC 1 cut(s) 40
CviAII CATG 1 cut(s) 195
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 1 cut(s) 363
DpnI GATC 2 cut(s) 110, 561
DpnII GATC 2 cut(s) 108, 559
DriI GACNNNNNGTC 1 cut(s) 597
EaeI YGGCCR 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 15
Eam1105I GACNNNNNGTC 1 cut(s) 597
EarI CTCTTC 1 cut(s) 15
Ecl136II GAGCTC 1 cut(s) 367
Eco130I CCWWGG 3 cut(s) 93, 159, 212
Eco24I GRGCYC 1 cut(s) 369
Eco32I GATATC 1 cut(s) 484
Eco53kI GAGCTC 1 cut(s) 367
EcoICRI GAGCTC 1 cut(s) 367
EcoRII CCWGG 1 cut(s) 48
EcoRV GATATC 1 cut(s) 484
EcoT14I CCWWGG 3 cut(s) 93, 159, 212
EcoT38I GRGCYC 1 cut(s) 369
ErhI CCWWGG 3 cut(s) 93, 159, 212
FaeI CATG 1 cut(s) 198
FaiI YATR 5 cut(s) 30, 45, 143, 196, 246
FatI CATG 1 cut(s) 194
FauI CCCGC 2 cut(s) 484, 526
FblI GTMKAC 3 cut(s) 142, 512, 621
Fnu4HI GCNGC 1 cut(s) 26
FokI GGATG 2 cut(s) 142, 508
FriOI GRGCYC 1 cut(s) 369
FseI GGCCGGCC 1 cut(s) 378
Fsp4HI GCNGC 1 cut(s) 26
FspBI CTAG 5 cut(s) 213, 228, 252, 531, 555
GlaI GCGC 1 cut(s) 24
GluI GCNGC 1 cut(s) 26
HaeIII GGCC 6 cut(s) 48, 67, 72, 81, 374, 378
HapII CCGG 5 cut(s) 68, 118, 132, 375, 380
HgaI GACGC 1 cut(s) 587
HhaI GCGC 1 cut(s) 25
Hin1II CATG 1 cut(s) 198
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HinfI GANTC 4 cut(s) 7, 578, 592, 610
HpaII CCGG 5 cut(s) 68, 118, 132, 375, 380
Hpy166II GTNNAC 4 cut(s) 143, 316, 513, 622
Hpy188I TCNGA 5 cut(s) 104, 271, 364, 437, 609
Hpy188III TCNNGA 1 cut(s) 614
Hpy8I GTNNAC 4 cut(s) 143, 316, 513, 622
Hpy99I CGWCG 2 cut(s) 88, 603
HpyCH4III ACNGT 2 cut(s) 267, 451
HpyCH4V TGCA 1 cut(s) 493
HpyF10VI GCNNNNNNNGC 6 cut(s) 64, 78, 380, 463, 472, 581
HpyF3I CTNAG 1 cut(s) 363
Hsp92II CATG 1 cut(s) 198
HspAI GCGC 1 cut(s) 23
KroI GCCGGC 1 cut(s) 374
KroNI GCCGGC 1 cut(s) 376
Kzo9I GATC 2 cut(s) 108, 559
LmnI GCTCC 1 cut(s) 191
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 1 cut(s) 530
MaeI CTAG 5 cut(s) 213, 228, 252, 531, 555
MalI GATC 2 cut(s) 110, 561
MboI GATC 2 cut(s) 108, 559
MboII GAAGA 2 cut(s) 337, 540
MfeI CAATTG 3 cut(s) 112, 300, 501
MflI RGATCY 1 cut(s) 559
MhlI GDGCHC 1 cut(s) 369
MlsI TGGCCA 1 cut(s) 48
MluCI AATT 4 cut(s) 112, 300, 461, 501
MluNI TGGCCA 1 cut(s) 48
MlyI GAGTC 1 cut(s) 586
MmeI TCCRAC 1 cut(s) 460
MnlI CCTC 2 cut(s) 98, 219
Mox20I TGGCCA 1 cut(s) 48
MroNI GCCGGC 1 cut(s) 374
MroXI GAANNNNTTC 1 cut(s) 352
MscI TGGCCA 1 cut(s) 48
MslI CAYNNNNRTG 1 cut(s) 342
Msp20I TGGCCA 1 cut(s) 48
MspA1I CMGCKG 1 cut(s) 479
MspI CCGG 5 cut(s) 68, 118, 132, 375, 380
MspR9I CCNGG 4 cut(s) 50, 69, 133, 380
MunI CAATTG 3 cut(s) 112, 300, 501
Mva1269I GAATGC 1 cut(s) 603
MvaI CCWGG 1 cut(s) 50
MvnI CGCG 1 cut(s) 584
MwoI GCNNNNNNNGC 6 cut(s) 64, 78, 380, 463, 472, 581
NaeI GCCGGC 1 cut(s) 376
NciI CCSGG 3 cut(s) 69, 133, 380
NdeII GATC 2 cut(s) 108, 559
NgoMIV GCCGGC 1 cut(s) 374
NlaIII CATG 1 cut(s) 198
NspI RCATGY 1 cut(s) 198
PaeI GCATGC 1 cut(s) 198
PctI GAATGC 1 cut(s) 603
PdiI GCCGGC 1 cut(s) 376
PdmI GAANNNNTTC 1 cut(s) 352
PfeI GAWTC 2 cut(s) 578, 610
PkrI GCNGC 1 cut(s) 27
PleI GAGTC 1 cut(s) 586
PpsI GAGTC 1 cut(s) 586
Psp124BI GAGCTC 1 cut(s) 369
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
PspPI GGNCC 5 cut(s) 65, 70, 80, 372, 377
PsuI RGATCY 1 cut(s) 559
RigI GGCCGGCC 1 cut(s) 378
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
RseI CAYNNNNRTG 1 cut(s) 342
SacI GAGCTC 1 cut(s) 369
SatI GCNGC 1 cut(s) 26
Sau3AI GATC 2 cut(s) 108, 559
Sau96I GGNCC 5 cut(s) 65, 70, 80, 372, 377
ScaI AGTACT 1 cut(s) 41
SchI GAGTC 1 cut(s) 586
ScrFI CCNGG 4 cut(s) 50, 69, 133, 380
SduI GDGCHC 1 cut(s) 369
SetI ASST 3 cut(s) 142, 253, 369
SfaNI GCATC 1 cut(s) 530
SfiI GGCCNNNNNGGCC 1 cut(s) 78
SmiMI CAYNNNNRTG 1 cut(s) 342
SpeI ACTAGT 1 cut(s) 227
SphI GCATGC 1 cut(s) 198
Sse9I AATT 4 cut(s) 112, 300, 461, 501
SsiI CCGC 3 cut(s) 477, 519, 582
SspMI CTAG 5 cut(s) 213, 228, 252, 531, 555
SstI GAGCTC 1 cut(s) 369
StyD4I CCNGG 4 cut(s) 48, 67, 131, 378
StyI CCWWGG 3 cut(s) 93, 159, 212
TaaI ACNGT 2 cut(s) 267, 451
TaqI TCGA 4 cut(s) 323, 389, 459, 486
TasI AATT 4 cut(s) 112, 300, 461, 501
TatI WGTACW 1 cut(s) 39
TfiI GAWTC 2 cut(s) 578, 610
TseI GCWGC 1 cut(s) 25
TspDTI ATGAA 2 cut(s) 345, 399
XceI RCATGY 1 cut(s) 198
XmaJI CCTAGG 1 cut(s) 212
XmiI GTMKAC 3 cut(s) 142, 512, 621
XmnI GAANNNNTTC 1 cut(s) 352
XspI CTAG 5 cut(s) 213, 228, 252, 531, 555
ZrmI AGTACT 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.