RLG00000012187

Proline-rich nuclear receptor coactivator motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0011970
Physical Location & Seq
Forward (+)
16081841 .. 16082506
666 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012187

Sequence Viewer

Length: 666 bp
ATGGAGACCCTTCTTGTTGTGGAGCATAAGAACCAGTACTACAGCCGGGTCAAGCCACATGGTCCGGGCCGGGTCGGACCCTCGCCGTCCAAGAGCTTCCGAGGGATCAATTGCCGGACTTTCCAATCCGGCACAGGTATACTACCAACCCCTCCTCCATCGAAGTCGTCTTCTACTACTAGTACTACTCCTGTTTCGAAAAAACCATGCCCCCCTTCTGCTTATTCACCCAAGACACCTACACCTAGTGCAGATTTACAGTTTGATCACTTTGATGCTAAGCCTAAATTTTACTCTGACAGTAGAGCTGTGAGTAGAAGCAATGTGAGAACCAACCCAATTCCTATCAATGCCCGAAACCTGAAGAAAGAGAAGCCTTTTAATGAGAGTTTTTCATTTTCGGAACTCTGGGCTGGTCCTGCTTACTCAAACTCTCCCCCACCTAGTTCTTTGCCAATACCCAAATTTTCAGTTCGGCCAAAGAGGACTGTGTCGCTTGTATTGCCTAGCTCAGTTTCTGCTATTGAAATGCACCCAATTGCCAAGTCTGCGCCCCCATCCCCGACCAGAGAGCATAGCGCTTCCAAAAGAGATCTCTTTCACAATGCTGACTCAGCCACTAGGACTCTGCGTCGCATCCTCAACCTGGATGTTGACGACGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNRC

Protein Analysis

222

Amino Acids

24.24

Weight (kDa)

10.04

Isoelectric Point (pI)

62.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNRC PF15365 137 - 156 2.6e-07 Proline-rich nuclear receptor coactivator motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011970)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02715 AT4G02715
fragaria_vesca FvH4_2g23281
malus_domestica MD03G1262100.v1.1 MD11G1282800.v1.1
prunus_persica Prupe.8G238400_v2.0.a1
pyrus_communis pycom03g20990 pycom11g25050
rosa_chinensis RchiOBHm_Chr6g0290651
rosa_laevigata RLG00000012187
rosa_multiflora Rmu_co8113914.1_g000001 Rmu_sc0006791.1_g000005
rosa_roxburghii Rroxscaffold_7G00176830
rosa_rugosa Rorug06G0214000
rosa_samantha Rh6AG324500 Rh6BG332100 Rh6CG337800 Rh6DG325200
rosa_wichuraiana Rw6G028170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 139
AclWI GGATC 1 cut(s) 113
AcoI YGGCCR 1 cut(s) 476
AcsI RAATTY 2 cut(s) 287, 464
AcuI CTGAAG 1 cut(s) 383
AdeI CACNNNGTG 1 cut(s) 248
AfaI GTAC 2 cut(s) 38, 184
AfeI AGCGCT 1 cut(s) 580
AfiI CCNNNNNNNGG 1 cut(s) 646
AgsI TTSAA 1 cut(s) 527
AhdI GACNNNNNGTC 1 cut(s) 630
AhlI ACTAGT 1 cut(s) 179
AjnI CCWGG 1 cut(s) 645
AluBI AGCT 3 cut(s) 96, 308, 510
AluI AGCT 3 cut(s) 96, 308, 510
AlwI GGATC 1 cut(s) 113
AlwNI CAGNNNCTG 1 cut(s) 518
Aor51HI AGCGCT 1 cut(s) 580
AoxI GGCC 2 cut(s) 67, 476
ApoI RAATTY 2 cut(s) 287, 464
AspLEI GCGC 2 cut(s) 553, 581
AspS9I GGNCC 4 cut(s) 62, 67, 77, 416
AsuC2I CCSGG 3 cut(s) 47, 66, 71
AsuHPI GGTGA 1 cut(s) 219
AsuII TTCGAA 1 cut(s) 197
AvaII GGWCC 3 cut(s) 62, 77, 416
BbsI GAAGAC 1 cut(s) 162
BccI CCATC 2 cut(s) 166, 565
BceAI ACGGC 1 cut(s) 70
BciT130I CCWGG 1 cut(s) 647
BclI TGATCA 1 cut(s) 265
BcnI CCSGG 3 cut(s) 47, 66, 71
BcuI ACTAGT 1 cut(s) 179
BfaI CTAG 5 cut(s) 180, 246, 444, 507, 621
BfmI CTRYAG 1 cut(s) 40
BfoI RGCGCY 1 cut(s) 582
BglII AGATCT 1 cut(s) 592
BlpI GCTNAGC 1 cut(s) 279
BmcAI AGTACT 2 cut(s) 38, 184
Bme1390I CCNGG 4 cut(s) 47, 66, 71, 647
Bme18I GGWCC 3 cut(s) 62, 77, 416
BmeRI GACNNNNNGTC 1 cut(s) 630
BmgT120I GGNCC 4 cut(s) 62, 67, 77, 416
BmiI GGNNCC 1 cut(s) 79
BmrFI CCNGG 4 cut(s) 47, 66, 71, 647
BmsI GCATC 2 cut(s) 265, 645
BpiI GAAGAC 1 cut(s) 162
Bpu1102I GCTNAGC 1 cut(s) 279
Bpu14I TTCGAA 1 cut(s) 197
BpuMI CCSGG 3 cut(s) 47, 66, 71
BsaJI CCNNGG 1 cut(s) 100
BsaXI ACNNNNNCTCC 2 cut(s) 139, 169
Bsc4I CCNNNNNNNGG 1 cut(s) 646
Bse1I ACTGG 1 cut(s) 34
Bse3DI GCAATG 1 cut(s) 328
BseBI CCWGG 1 cut(s) 647
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 3 cut(s) 557, 636, 655
BseLI CCNNNNNNNGG 1 cut(s) 646
BseMI GCAATG 1 cut(s) 328
BseMII CTCAG 2 cut(s) 525, 627
BseNI ACTGG 1 cut(s) 34
BseRI GAGGAG 1 cut(s) 144
BsgI GTGCAG 1 cut(s) 270
BshFI GGCC 2 cut(s) 69, 478
BsiSI CCGG 5 cut(s) 46, 65, 70, 115, 129
BslI CCNNNNNNNGG 1 cut(s) 646
BsnI GGCC 2 cut(s) 69, 478
Bsp119I TTCGAA 1 cut(s) 197
Bsp143I GATC 3 cut(s) 105, 265, 592
Bsp1720I GCTNAGC 1 cut(s) 279
BspANI GGCC 2 cut(s) 69, 478
BspCNI CTCAG 2 cut(s) 524, 626
BspLI GGNNCC 1 cut(s) 79
BspPI GGATC 1 cut(s) 113
BspT104I TTCGAA 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 328
BsrI ACTGG 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 3 cut(s) 105, 265, 592
BssNAI GTATAC 1 cut(s) 140
Bst1107I GTATAC 1 cut(s) 140
Bst2UI CCWGG 1 cut(s) 647
Bst4CI ACNGT 3 cut(s) 261, 302, 490
BstBI TTCGAA 1 cut(s) 197
BstDEI CTNAG 3 cut(s) 279, 511, 613
BstF5I GGATG 3 cut(s) 557, 636, 655
BstH2I RGCGCY 1 cut(s) 582
BstHHI GCGC 2 cut(s) 553, 581
BstKTI GATC 3 cut(s) 108, 268, 595
BstMBI GATC 3 cut(s) 105, 265, 592
BstMWI GCNNNNNNNGC 4 cut(s) 419, 502, 548, 614
BstNI CCWGG 1 cut(s) 647
BstSCI CCNGG 4 cut(s) 45, 64, 69, 645
BstSFI CTRYAG 1 cut(s) 40
BstV2I GAAGAC 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 592
BstYI RGATCY 1 cut(s) 592
BstZ17I GTATAC 1 cut(s) 140
BsuRI GGCC 2 cut(s) 69, 478
BtsCI GGATG 3 cut(s) 557, 636, 655
CaiI CAGNNNCTG 1 cut(s) 518
CfoI GCGC 2 cut(s) 553, 581
Cfr13I GGNCC 4 cut(s) 62, 67, 77, 416
CseI GACGC 1 cut(s) 620
Csp6I GTAC 2 cut(s) 37, 183
CviAII CATG 2 cut(s) 59, 207
CviQI GTAC 2 cut(s) 37, 183
DdeI CTNAG 3 cut(s) 279, 511, 613
DpnI GATC 3 cut(s) 107, 267, 594
DpnII GATC 3 cut(s) 105, 265, 592
DraIII CACNNNGTG 1 cut(s) 248
DriI GACNNNNNGTC 1 cut(s) 630
EaeI YGGCCR 1 cut(s) 476
Eam1105I GACNNNNNGTC 1 cut(s) 630
Eco47I GGWCC 3 cut(s) 62, 77, 416
Eco47III AGCGCT 1 cut(s) 580
Eco57I CTGAAG 1 cut(s) 383
EcoRII CCWGG 1 cut(s) 645
FaeI CATG 2 cut(s) 62, 210
FaiI YATR 5 cut(s) 27, 60, 140, 208, 576
FatI CATG 2 cut(s) 58, 206
FbaI TGATCA 1 cut(s) 265
FblI GTMKAC 1 cut(s) 139
FokI GGATG 3 cut(s) 544, 623, 662
FspBI CTAG 5 cut(s) 180, 246, 444, 507, 621
GlaI GCGC 2 cut(s) 552, 580
HaeII RGCGCY 1 cut(s) 582
HaeIII GGCC 2 cut(s) 69, 478
HapII CCGG 5 cut(s) 46, 65, 70, 115, 129
HgaI GACGC 1 cut(s) 620
HhaI GCGC 2 cut(s) 553, 581
Hin1II CATG 2 cut(s) 62, 210
Hin6I GCGC 2 cut(s) 551, 579
HinP1I GCGC 2 cut(s) 551, 579
HincII GTYRAC 1 cut(s) 655
HindII GTYRAC 1 cut(s) 655
HinfI GANTC 2 cut(s) 611, 625
HpaII CCGG 5 cut(s) 46, 65, 70, 115, 129
HphI GGTGA 1 cut(s) 219
Hpy166II GTNNAC 2 cut(s) 140, 655
Hpy188I TCNGA 4 cut(s) 77, 101, 298, 403
Hpy8I GTNNAC 2 cut(s) 140, 655
Hpy99I CGWCG 2 cut(s) 636, 662
HpyAV CCTTC 2 cut(s) 20, 225
HpyCH4III ACNGT 3 cut(s) 261, 302, 490
HpyCH4V TGCA 2 cut(s) 251, 532
HpyF10VI GCNNNNNNNGC 4 cut(s) 419, 502, 548, 614
HpyF3I CTNAG 3 cut(s) 279, 511, 613
Hsp92II CATG 2 cut(s) 62, 210
HspAI GCGC 2 cut(s) 551, 579
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 3 cut(s) 105, 265, 592
LmnI GCTCC 1 cut(s) 22
LweI GCATC 2 cut(s) 265, 645
MaeI CTAG 5 cut(s) 180, 246, 444, 507, 621
MalI GATC 3 cut(s) 107, 267, 594
MboI GATC 3 cut(s) 105, 265, 592
MboII GAAGA 2 cut(s) 162, 376
MfeI CAATTG 2 cut(s) 109, 537
MflI RGATCY 1 cut(s) 592
MluCI AATT 5 cut(s) 109, 287, 339, 464, 537
MlyI GAGTC 2 cut(s) 605, 619
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 6 cut(s) 91, 95, 162, 165, 477, 650
MseI TTAA 1 cut(s) 381
MslI CAYNNNNRTG 1 cut(s) 273
MspI CCGG 5 cut(s) 46, 65, 70, 115, 129
MspR9I CCNGG 4 cut(s) 47, 66, 71, 647
MunI CAATTG 2 cut(s) 109, 537
MvaI CCWGG 1 cut(s) 647
MwoI GCNNNNNNNGC 4 cut(s) 419, 502, 548, 614
NciI CCSGG 3 cut(s) 47, 66, 71
NdeII GATC 3 cut(s) 105, 265, 592
NlaIII CATG 2 cut(s) 62, 210
NlaIV GGNNCC 1 cut(s) 79
NspV TTCGAA 1 cut(s) 197
PflFI GACNNNGTC 1 cut(s) 490
PleI GAGTC 2 cut(s) 605, 619
PpsI GAGTC 2 cut(s) 605, 619
Psp6I CCWGG 1 cut(s) 645
PspGI CCWGG 1 cut(s) 645
PspN4I GGNNCC 1 cut(s) 79
PspPI GGNCC 4 cut(s) 62, 67, 77, 416
PsrI GAACNNNNNNTAC 2 cut(s) 23, 55
PstNI CAGNNNCTG 1 cut(s) 518
PsuI RGATCY 1 cut(s) 592
PsyI GACNNNGTC 1 cut(s) 490
RsaI GTAC 2 cut(s) 38, 184
RsaNI GTAC 2 cut(s) 37, 183
RseI CAYNNNNRTG 1 cut(s) 273
SaqAI TTAA 1 cut(s) 381
Sau3AI GATC 3 cut(s) 105, 265, 592
Sau96I GGNCC 4 cut(s) 62, 67, 77, 416
ScaI AGTACT 2 cut(s) 38, 184
SchI GAGTC 2 cut(s) 605, 619
ScrFI CCNGG 4 cut(s) 47, 66, 71, 647
SetI ASST 9 cut(s) 98, 139, 241, 247, 310, 363, 445, 512, 648
SfaNI GCATC 2 cut(s) 265, 645
SfcI CTRYAG 1 cut(s) 40
SfuI TTCGAA 1 cut(s) 197
SinI GGWCC 3 cut(s) 62, 77, 416
SmiMI CAYNNNNRTG 1 cut(s) 273
SpeI ACTAGT 1 cut(s) 179
Sse9I AATT 5 cut(s) 109, 287, 339, 464, 537
SspMI CTAG 5 cut(s) 180, 246, 444, 507, 621
StyD4I CCNGG 4 cut(s) 45, 64, 69, 645
TaaI ACNGT 3 cut(s) 261, 302, 490
TaqI TCGA 2 cut(s) 161, 197
TasI AATT 5 cut(s) 109, 287, 339, 464, 537
TatI WGTACW 2 cut(s) 36, 182
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TspDTI ATGAA 1 cut(s) 384
Tth111I GACNNNGTC 1 cut(s) 490
VpaK11BI GGWCC 3 cut(s) 62, 77, 416
XapI RAATTY 2 cut(s) 287, 464
XmiI GTMKAC 1 cut(s) 139
XspI CTAG 5 cut(s) 180, 246, 444, 507, 621
ZrmI AGTACT 2 cut(s) 38, 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.