Rh6BG332100

Proline-rich nuclear receptor coactivator motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0011970
Physical Location & Seq
Reverse (-)
56466916 .. 56467587
672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG332100.1

Sequence Viewer

Length: 672 bp
ATGGAGACCCTTCTTGTTGTGGAGCATAAGAACCAGTACTACAGCCGGGTCAAGCCACATGGGCCGGGCCGGGTCGGACCCTCGCCGTCCAAGAGCTTCCGAGGGATCAATTGCCGGACTTTCCAATCCGGCACAGGTATACTACCAACCCCTCCTCCATTGAAGTCGTCTTCTACTACTACTACTACTACTAGTACTAGTACTCCTGTTTCGAAAAAACCATGCCCCCCTTCTGCTTATTCACCCAAGACACCTACACCTAGTGCGGATTCACAGTTTGATGCTAAGCCTAAATATTACTCTGACAGTAAAGCTGTGAGTAGAAGCAATGTGAGAACCAACCCAATTCCTATCAATGCCCGAAACCTGAAGAAAGAGAAGCCTTTTAATGAGAGTTTTTCATTTTCGGAACTCTGGGCTGGTCCTGCTTACTCAAACTCTCCCCCACCTAGTTCTTTGCCAATACCCAAATTTTCAGTTCGGCCAAAGAGGACCGTGTCGCTTGAATTGCCTAGCTCTGTTTCTGCTATTGAAATCCACCCAATTGCCAAGTCTGCACCCCCATCCCCGACCAGAGAGCATAGCTCTTCCAAAAGAGATCTCTTTCACAATGCTGACTCTGCCACTAGGACTCTGCGTCGCATCCTCAACCTGGATGTTGACGACGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNRC

Protein Analysis

223

Amino Acids

24.34

Weight (kDa)

9.97

Isoelectric Point (pI)

59.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNRC PF15365 139 - 158 2.6e-07 Proline-rich nuclear receptor coactivator motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011970)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02715 AT4G02715
fragaria_vesca FvH4_2g23281
malus_domestica MD03G1262100.v1.1 MD11G1282800.v1.1
prunus_persica Prupe.8G238400_v2.0.a1
pyrus_communis pycom03g20990 pycom11g25050
rosa_chinensis RchiOBHm_Chr6g0290651
rosa_laevigata RLG00000012187
rosa_multiflora Rmu_co8113914.1_g000001 Rmu_sc0006791.1_g000005
rosa_roxburghii Rroxscaffold_7G00176830
rosa_rugosa Rorug06G0214000
rosa_samantha Rh6AG324500 Rh6BG332100 Rh6CG337800 Rh6DG325200
rosa_wichuraiana Rw6G028170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 139
AciI CCGC 1 cut(s) 266
AclWI GGATC 1 cut(s) 113
AcoI YGGCCR 1 cut(s) 482
AcsI RAATTY 1 cut(s) 470
AcuI CTGAAG 1 cut(s) 389
AdeI CACNNNGTG 1 cut(s) 263
AfaI GTAC 3 cut(s) 38, 196, 202
AfiI CCNNNNNNNGG 1 cut(s) 652
AgsI TTSAA 3 cut(s) 163, 506, 533
AhdI GACNNNNNGTC 1 cut(s) 636
AhlI ACTAGT 2 cut(s) 191, 197
AjnI CCWGG 1 cut(s) 651
AluBI AGCT 4 cut(s) 96, 314, 516, 585
AluI AGCT 4 cut(s) 96, 314, 516, 585
AlwI GGATC 1 cut(s) 113
AoxI GGCC 3 cut(s) 62, 67, 482
ApoI RAATTY 1 cut(s) 470
AspS9I GGNCC 5 cut(s) 62, 67, 77, 422, 492
AsuC2I CCSGG 3 cut(s) 47, 66, 71
AsuHPI GGTGA 1 cut(s) 234
AsuII TTCGAA 1 cut(s) 212
AvaII GGWCC 3 cut(s) 77, 422, 492
BbsI GAAGAC 1 cut(s) 162
BccI CCATC 1 cut(s) 571
BceAI ACGGC 1 cut(s) 70
BciT130I CCWGG 1 cut(s) 653
BcnI CCSGG 3 cut(s) 47, 66, 71
BcuI ACTAGT 2 cut(s) 191, 197
BfaI CTAG 6 cut(s) 192, 198, 261, 450, 513, 627
BfmI CTRYAG 1 cut(s) 40
BglI GCCNNNNNGGC 1 cut(s) 61
BglII AGATCT 1 cut(s) 598
BlpI GCTNAGC 1 cut(s) 285
BmcAI AGTACT 3 cut(s) 38, 196, 202
Bme1390I CCNGG 4 cut(s) 47, 66, 71, 653
Bme18I GGWCC 3 cut(s) 77, 422, 492
BmeRI GACNNNNNGTC 1 cut(s) 636
BmgT120I GGNCC 5 cut(s) 62, 67, 77, 422, 492
BmiI GGNNCC 1 cut(s) 79
BmrFI CCNGG 4 cut(s) 47, 66, 71, 653
BmsI GCATC 2 cut(s) 271, 651
BpiI GAAGAC 1 cut(s) 162
BplI GAGNNNNNCTC 2 cut(s) 569, 601
Bpu1102I GCTNAGC 1 cut(s) 285
Bpu14I TTCGAA 1 cut(s) 212
BpuMI CCSGG 3 cut(s) 47, 66, 71
BsaJI CCNNGG 1 cut(s) 100
BsaXI ACNNNNNCTCC 4 cut(s) 139, 169, 187, 217
Bsc4I CCNNNNNNNGG 1 cut(s) 652
Bse1I ACTGG 1 cut(s) 34
Bse3DI GCAATG 1 cut(s) 334
BseBI CCWGG 1 cut(s) 653
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 3 cut(s) 563, 642, 661
BseLI CCNNNNNNNGG 1 cut(s) 652
BseMI GCAATG 1 cut(s) 334
BseNI ACTGG 1 cut(s) 34
BseRI GAGGAG 1 cut(s) 144
BsgI GTGCAG 1 cut(s) 540
BshFI GGCC 3 cut(s) 64, 69, 484
BsiSI CCGG 5 cut(s) 46, 65, 70, 115, 129
BslI CCNNNNNNNGG 1 cut(s) 652
BsnI GGCC 3 cut(s) 64, 69, 484
Bsp119I TTCGAA 1 cut(s) 212
Bsp143I GATC 2 cut(s) 105, 598
Bsp1720I GCTNAGC 1 cut(s) 285
BspACI CCGC 1 cut(s) 266
BspANI GGCC 3 cut(s) 64, 69, 484
BspLI GGNNCC 1 cut(s) 79
BspPI GGATC 1 cut(s) 113
BspQI GCTCTTC 1 cut(s) 592
BspT104I TTCGAA 1 cut(s) 212
BsrDI GCAATG 1 cut(s) 334
BsrI ACTGG 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 2 cut(s) 105, 598
BssNAI GTATAC 1 cut(s) 140
Bst1107I GTATAC 1 cut(s) 140
Bst2UI CCWGG 1 cut(s) 653
Bst4CI ACNGT 3 cut(s) 276, 308, 496
Bst6I CTCTTC 1 cut(s) 592
BstBI TTCGAA 1 cut(s) 212
BstDEI CTNAG 1 cut(s) 285
BstF5I GGATG 3 cut(s) 563, 642, 661
BstKTI GATC 2 cut(s) 108, 601
BstMBI GATC 2 cut(s) 105, 598
BstMWI GCNNNNNNNGC 5 cut(s) 61, 425, 508, 554, 620
BstNI CCWGG 1 cut(s) 653
BstSCI CCNGG 4 cut(s) 45, 64, 69, 651
BstSFI CTRYAG 1 cut(s) 40
BstV2I GAAGAC 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 598
BstYI RGATCY 1 cut(s) 598
BstZ17I GTATAC 1 cut(s) 140
BsuRI GGCC 3 cut(s) 64, 69, 484
BtsCI GGATG 3 cut(s) 563, 642, 661
Cfr13I GGNCC 5 cut(s) 62, 67, 77, 422, 492
CseI GACGC 1 cut(s) 626
Csp6I GTAC 3 cut(s) 37, 195, 201
CviAII CATG 2 cut(s) 59, 222
CviQI GTAC 3 cut(s) 37, 195, 201
DdeI CTNAG 1 cut(s) 285
DpnI GATC 2 cut(s) 107, 600
DpnII GATC 2 cut(s) 105, 598
DraIII CACNNNGTG 1 cut(s) 263
DriI GACNNNNNGTC 1 cut(s) 636
EaeI YGGCCR 1 cut(s) 482
Eam1104I CTCTTC 1 cut(s) 592
Eam1105I GACNNNNNGTC 1 cut(s) 636
EarI CTCTTC 1 cut(s) 592
Eco47I GGWCC 3 cut(s) 77, 422, 492
Eco57I CTGAAG 1 cut(s) 389
EcoRII CCWGG 1 cut(s) 651
FaeI CATG 2 cut(s) 62, 225
FaiI YATR 5 cut(s) 27, 60, 140, 223, 582
FatI CATG 2 cut(s) 58, 221
FblI GTMKAC 1 cut(s) 139
FokI GGATG 3 cut(s) 550, 629, 668
FspBI CTAG 6 cut(s) 192, 198, 261, 450, 513, 627
HaeIII GGCC 3 cut(s) 64, 69, 484
HapII CCGG 5 cut(s) 46, 65, 70, 115, 129
HgaI GACGC 1 cut(s) 626
Hin1II CATG 2 cut(s) 62, 225
HincII GTYRAC 1 cut(s) 661
HindII GTYRAC 1 cut(s) 661
HinfI GANTC 3 cut(s) 269, 617, 631
HpaII CCGG 5 cut(s) 46, 65, 70, 115, 129
HphI GGTGA 1 cut(s) 234
Hpy166II GTNNAC 2 cut(s) 140, 661
Hpy188I TCNGA 4 cut(s) 77, 101, 304, 409
Hpy8I GTNNAC 2 cut(s) 140, 661
Hpy99I CGWCG 2 cut(s) 642, 668
HpyAV CCTTC 2 cut(s) 20, 240
HpyCH4III ACNGT 3 cut(s) 276, 308, 496
HpyCH4V TGCA 1 cut(s) 557
HpyF10VI GCNNNNNNNGC 5 cut(s) 61, 425, 508, 554, 620
HpyF3I CTNAG 1 cut(s) 285
Hsp92II CATG 2 cut(s) 62, 225
Kzo9I GATC 2 cut(s) 105, 598
LguI GCTCTTC 1 cut(s) 592
LmnI GCTCC 1 cut(s) 22
LweI GCATC 2 cut(s) 271, 651
MaeI CTAG 6 cut(s) 192, 198, 261, 450, 513, 627
MalI GATC 2 cut(s) 107, 600
MboI GATC 2 cut(s) 105, 598
MboII GAAGA 3 cut(s) 162, 382, 579
MfeI CAATTG 2 cut(s) 109, 543
MflI RGATCY 1 cut(s) 598
MluCI AATT 5 cut(s) 109, 345, 470, 506, 543
MlyI GAGTC 2 cut(s) 611, 625
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 6 cut(s) 91, 95, 162, 165, 483, 656
MseI TTAA 1 cut(s) 387
MspI CCGG 5 cut(s) 46, 65, 70, 115, 129
MspR9I CCNGG 4 cut(s) 47, 66, 71, 653
MunI CAATTG 2 cut(s) 109, 543
MvaI CCWGG 1 cut(s) 653
MwoI GCNNNNNNNGC 5 cut(s) 61, 425, 508, 554, 620
NciI CCSGG 3 cut(s) 47, 66, 71
NdeII GATC 2 cut(s) 105, 598
NlaIII CATG 2 cut(s) 62, 225
NlaIV GGNNCC 1 cut(s) 79
NspV TTCGAA 1 cut(s) 212
PciSI GCTCTTC 1 cut(s) 592
PfeI GAWTC 1 cut(s) 269
PflFI GACNNNGTC 1 cut(s) 496
PleI GAGTC 2 cut(s) 611, 625
PpsI GAGTC 2 cut(s) 611, 625
Psp6I CCWGG 1 cut(s) 651
PspGI CCWGG 1 cut(s) 651
PspN4I GGNNCC 1 cut(s) 79
PspPI GGNCC 5 cut(s) 62, 67, 77, 422, 492
PsrI GAACNNNNNNTAC 2 cut(s) 23, 55
PsuI RGATCY 1 cut(s) 598
PsyI GACNNNGTC 1 cut(s) 496
RsaI GTAC 3 cut(s) 38, 196, 202
RsaNI GTAC 3 cut(s) 37, 195, 201
SapI GCTCTTC 1 cut(s) 592
SaqAI TTAA 1 cut(s) 387
Sau3AI GATC 2 cut(s) 105, 598
Sau96I GGNCC 5 cut(s) 62, 67, 77, 422, 492
ScaI AGTACT 3 cut(s) 38, 196, 202
SchI GAGTC 2 cut(s) 611, 625
ScrFI CCNGG 4 cut(s) 47, 66, 71, 653
SfaNI GCATC 2 cut(s) 271, 651
SfcI CTRYAG 1 cut(s) 40
SfuI TTCGAA 1 cut(s) 212
SinI GGWCC 3 cut(s) 77, 422, 492
SpeI ACTAGT 2 cut(s) 191, 197
Sse9I AATT 5 cut(s) 109, 345, 470, 506, 543
SsiI CCGC 1 cut(s) 266
SspI AATATT 1 cut(s) 296
SspMI CTAG 6 cut(s) 192, 198, 261, 450, 513, 627
StyD4I CCNGG 4 cut(s) 45, 64, 69, 651
TaaI ACNGT 3 cut(s) 276, 308, 496
TaqI TCGA 1 cut(s) 212
TasI AATT 5 cut(s) 109, 345, 470, 506, 543
TatI WGTACW 3 cut(s) 36, 194, 200
TfiI GAWTC 1 cut(s) 269
Tru1I TTAA 1 cut(s) 387
Tru9I TTAA 1 cut(s) 387
TspDTI ATGAA 1 cut(s) 390
Tth111I GACNNNGTC 1 cut(s) 496
VpaK11BI GGWCC 3 cut(s) 77, 422, 492
XapI RAATTY 1 cut(s) 470
XmiI GTMKAC 1 cut(s) 139
XspI CTAG 6 cut(s) 192, 198, 261, 450, 513, 627
ZrmI AGTACT 3 cut(s) 38, 196, 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.