RchiOBHm_Chr6g0290651

Proline-rich nuclear receptor coactivator motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0011970
Physical Location & Seq
Reverse (-)
53685299 .. 53688324
3026 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26078

Sequence Viewer

Length: 669 bp
ATGGAGACCCTTCTTGTTGTGGAGCATAAGAACCAGTACTACAGCCGGGTCAAGCCACATGGGCCAGGCCGGGTCGGACCCTCGCCGTCCAAGAGCTTCCGAGGGATCAATTGCCGGACTTTCCAATCCGGCACAGGTATACTACCAACCCCTCCTCCATTGAAGTCGTCTTCTACTAGTACTAGTACTAGTACTAGTACTCCTGTTTCGAAAAAACCATGCCCCCCTTCTGCTTATTCACCCAAGACACCTACACCTAGTGCGGATTCACAGATTGATGCTAAGCCTAAATTTTACTCTGACAGTAAAGCTGTGAGTAGAAGCAATGTGAGAACCAACCCAATTCCTATCAATGCCCGAAATCTGAAGAAAGAGAAGCCTTTTAATGAGAGTTTTTCATTTTCGGAACTCTGGGCTGGTCCTGCTTACTCAAACTCTCCCCCACCTAGTTCTTTGCCAATACCCAAATTTTCAGTTCGGCCAAAGAGGACCGTGTCGCTTGAATTGCCTAGCTCAGTTTCTGCTATTGAAATGCACCCAATTGCCAGGTCTGCACCCCCGTCCCCGACCAGAGAGCATAGCTCTTCCAAAAGAGATCTCTTTTACAATGCTGACTCAGCCACTAGGACTCTGCGTCGCATCCTCAACCTGGATGTTGACGACGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNRC

Protein Analysis

222

Amino Acids

24.24

Weight (kDa)

10.0

Isoelectric Point (pI)

64.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNRC PF15365 138 - 157 2.6e-07 Proline-rich nuclear receptor coactivator motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011970)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02715 AT4G02715
fragaria_vesca FvH4_2g23281
malus_domestica MD03G1262100.v1.1 MD11G1282800.v1.1
prunus_persica Prupe.8G238400_v2.0.a1
pyrus_communis pycom03g20990 pycom11g25050
rosa_chinensis RchiOBHm_Chr6g0290651
rosa_laevigata RLG00000012187
rosa_multiflora Rmu_co8113914.1_g000001 Rmu_sc0006791.1_g000005
rosa_roxburghii Rroxscaffold_7G00176830
rosa_rugosa Rorug06G0214000
rosa_samantha Rh6AG324500 Rh6BG332100 Rh6CG337800 Rh6DG325200
rosa_wichuraiana Rw6G028170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 139
AciI CCGC 1 cut(s) 263
AclWI GGATC 1 cut(s) 113
AcoI YGGCCR 1 cut(s) 479
AcsI RAATTY 2 cut(s) 290, 467
AcuI CTGAAG 1 cut(s) 386
AdeI CACNNNGTG 1 cut(s) 260
AfaI GTAC 5 cut(s) 38, 181, 187, 193, 199
AfiI CCNNNNNNNGG 1 cut(s) 649
AgsI TTSAA 3 cut(s) 163, 503, 530
AhdI GACNNNNNGTC 1 cut(s) 633
AhlI ACTAGT 4 cut(s) 176, 182, 188, 194
AjnI CCWGG 3 cut(s) 64, 545, 648
AluBI AGCT 4 cut(s) 96, 311, 513, 582
AluI AGCT 4 cut(s) 96, 311, 513, 582
AlwI GGATC 1 cut(s) 113
AlwNI CAGNNNCTG 1 cut(s) 521
AoxI GGCC 3 cut(s) 62, 67, 479
ApoI RAATTY 2 cut(s) 290, 467
AspS9I GGNCC 4 cut(s) 62, 77, 419, 489
AsuC2I CCSGG 2 cut(s) 47, 71
AsuHPI GGTGA 1 cut(s) 231
AsuII TTCGAA 1 cut(s) 209
AvaII GGWCC 3 cut(s) 77, 419, 489
BbsI GAAGAC 1 cut(s) 162
BceAI ACGGC 1 cut(s) 70
BciT130I CCWGG 3 cut(s) 66, 547, 650
BcnI CCSGG 2 cut(s) 47, 71
BcuI ACTAGT 4 cut(s) 176, 182, 188, 194
BfaI CTAG 8 cut(s) 177, 183, 189, 195, 258, 447, 510, 624
BfmI CTRYAG 1 cut(s) 40
BglI GCCNNNNNGGC 1 cut(s) 61
BglII AGATCT 1 cut(s) 595
BlpI GCTNAGC 1 cut(s) 282
BmcAI AGTACT 5 cut(s) 38, 181, 187, 193, 199
Bme1390I CCNGG 5 cut(s) 47, 66, 71, 547, 650
Bme18I GGWCC 3 cut(s) 77, 419, 489
BmeRI GACNNNNNGTC 1 cut(s) 633
BmgT120I GGNCC 4 cut(s) 62, 77, 419, 489
BmiI GGNNCC 1 cut(s) 79
BmrFI CCNGG 5 cut(s) 47, 66, 71, 547, 650
BmsI GCATC 2 cut(s) 268, 648
BpiI GAAGAC 1 cut(s) 162
BplI GAGNNNNNCTC 2 cut(s) 566, 598
Bpu1102I GCTNAGC 1 cut(s) 282
Bpu14I TTCGAA 1 cut(s) 209
BpuMI CCSGG 2 cut(s) 47, 71
BsaJI CCNNGG 1 cut(s) 100
BsaXI ACNNNNNCTCC 4 cut(s) 139, 169, 184, 214
Bsc4I CCNNNNNNNGG 1 cut(s) 649
Bse1I ACTGG 1 cut(s) 34
Bse3DI GCAATG 1 cut(s) 331
BseBI CCWGG 3 cut(s) 66, 547, 650
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 2 cut(s) 639, 658
BseLI CCNNNNNNNGG 1 cut(s) 649
BseMI GCAATG 1 cut(s) 331
BseMII CTCAG 2 cut(s) 528, 630
BseNI ACTGG 1 cut(s) 34
BseRI GAGGAG 1 cut(s) 144
BsgI GTGCAG 1 cut(s) 537
BshFI GGCC 3 cut(s) 64, 69, 481
BsiSI CCGG 4 cut(s) 46, 70, 115, 129
BslFI GGGAC 1 cut(s) 547
BslI CCNNNNNNNGG 1 cut(s) 649
BsmFI GGGAC 1 cut(s) 547
BsnI GGCC 3 cut(s) 64, 69, 481
Bsp119I TTCGAA 1 cut(s) 209
Bsp143I GATC 2 cut(s) 105, 595
Bsp1720I GCTNAGC 1 cut(s) 282
BspACI CCGC 1 cut(s) 263
BspANI GGCC 3 cut(s) 64, 69, 481
BspCNI CTCAG 2 cut(s) 527, 629
BspLI GGNNCC 1 cut(s) 79
BspPI GGATC 1 cut(s) 113
BspQI GCTCTTC 1 cut(s) 589
BspT104I TTCGAA 1 cut(s) 209
BsrDI GCAATG 1 cut(s) 331
BsrI ACTGG 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 2 cut(s) 105, 595
BssNAI GTATAC 1 cut(s) 140
Bst1107I GTATAC 1 cut(s) 140
Bst2UI CCWGG 3 cut(s) 66, 547, 650
Bst4CI ACNGT 2 cut(s) 305, 493
Bst6I CTCTTC 1 cut(s) 589
BstBI TTCGAA 1 cut(s) 209
BstDEI CTNAG 3 cut(s) 282, 514, 616
BstF5I GGATG 2 cut(s) 639, 658
BstKTI GATC 2 cut(s) 108, 598
BstMBI GATC 2 cut(s) 105, 595
BstMWI GCNNNNNNNGC 5 cut(s) 61, 422, 505, 551, 617
BstNI CCWGG 3 cut(s) 66, 547, 650
BstSCI CCNGG 5 cut(s) 45, 64, 69, 545, 648
BstSFI CTRYAG 1 cut(s) 40
BstV2I GAAGAC 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 595
BstYI RGATCY 1 cut(s) 595
BstZ17I GTATAC 1 cut(s) 140
BsuRI GGCC 3 cut(s) 64, 69, 481
BtsCI GGATG 2 cut(s) 639, 658
CaiI CAGNNNCTG 1 cut(s) 521
Cfr13I GGNCC 4 cut(s) 62, 77, 419, 489
CseI GACGC 1 cut(s) 623
Csp6I GTAC 5 cut(s) 37, 180, 186, 192, 198
CviAII CATG 2 cut(s) 59, 219
CviQI GTAC 5 cut(s) 37, 180, 186, 192, 198
DdeI CTNAG 3 cut(s) 282, 514, 616
DpnI GATC 2 cut(s) 107, 597
DpnII GATC 2 cut(s) 105, 595
DraIII CACNNNGTG 1 cut(s) 260
DriI GACNNNNNGTC 1 cut(s) 633
EaeI YGGCCR 1 cut(s) 479
Eam1104I CTCTTC 1 cut(s) 589
Eam1105I GACNNNNNGTC 1 cut(s) 633
EarI CTCTTC 1 cut(s) 589
Eco47I GGWCC 3 cut(s) 77, 419, 489
Eco57I CTGAAG 1 cut(s) 386
EcoRII CCWGG 3 cut(s) 64, 545, 648
FaeI CATG 2 cut(s) 62, 222
FaiI YATR 5 cut(s) 27, 60, 140, 220, 579
FaqI GGGAC 1 cut(s) 547
FatI CATG 2 cut(s) 58, 218
FblI GTMKAC 1 cut(s) 139
FokI GGATG 2 cut(s) 626, 665
FspBI CTAG 8 cut(s) 177, 183, 189, 195, 258, 447, 510, 624
HaeIII GGCC 3 cut(s) 64, 69, 481
HapII CCGG 4 cut(s) 46, 70, 115, 129
HgaI GACGC 1 cut(s) 623
Hin1II CATG 2 cut(s) 62, 222
HincII GTYRAC 1 cut(s) 658
HindII GTYRAC 1 cut(s) 658
HinfI GANTC 3 cut(s) 266, 614, 628
HpaII CCGG 4 cut(s) 46, 70, 115, 129
HphI GGTGA 1 cut(s) 231
Hpy166II GTNNAC 2 cut(s) 140, 658
Hpy188I TCNGA 5 cut(s) 77, 101, 301, 366, 406
Hpy8I GTNNAC 2 cut(s) 140, 658
Hpy99I CGWCG 2 cut(s) 639, 665
HpyAV CCTTC 2 cut(s) 20, 237
HpyCH4III ACNGT 2 cut(s) 305, 493
HpyCH4V TGCA 2 cut(s) 535, 554
HpyF10VI GCNNNNNNNGC 5 cut(s) 61, 422, 505, 551, 617
HpyF3I CTNAG 3 cut(s) 282, 514, 616
Hsp92II CATG 2 cut(s) 62, 222
Kzo9I GATC 2 cut(s) 105, 595
LguI GCTCTTC 1 cut(s) 589
LmnI GCTCC 1 cut(s) 22
LweI GCATC 2 cut(s) 268, 648
MaeI CTAG 8 cut(s) 177, 183, 189, 195, 258, 447, 510, 624
MalI GATC 2 cut(s) 107, 597
MboI GATC 2 cut(s) 105, 595
MboII GAAGA 3 cut(s) 162, 379, 576
MfeI CAATTG 2 cut(s) 109, 540
MflI RGATCY 1 cut(s) 595
MluCI AATT 6 cut(s) 109, 290, 342, 467, 503, 540
MlyI GAGTC 2 cut(s) 608, 622
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 6 cut(s) 91, 95, 162, 165, 480, 653
MseI TTAA 1 cut(s) 384
MspI CCGG 4 cut(s) 46, 70, 115, 129
MspR9I CCNGG 5 cut(s) 47, 66, 71, 547, 650
MunI CAATTG 2 cut(s) 109, 540
MvaI CCWGG 3 cut(s) 66, 547, 650
MwoI GCNNNNNNNGC 5 cut(s) 61, 422, 505, 551, 617
NciI CCSGG 2 cut(s) 47, 71
NdeII GATC 2 cut(s) 105, 595
NlaIII CATG 2 cut(s) 62, 222
NlaIV GGNNCC 1 cut(s) 79
NspV TTCGAA 1 cut(s) 209
PciSI GCTCTTC 1 cut(s) 589
PfeI GAWTC 1 cut(s) 266
PflFI GACNNNGTC 1 cut(s) 493
PleI GAGTC 2 cut(s) 608, 622
PpsI GAGTC 2 cut(s) 608, 622
Psp6I CCWGG 3 cut(s) 64, 545, 648
PspGI CCWGG 3 cut(s) 64, 545, 648
PspN4I GGNNCC 1 cut(s) 79
PspPI GGNCC 4 cut(s) 62, 77, 419, 489
PsrI GAACNNNNNNTAC 2 cut(s) 23, 55
PstNI CAGNNNCTG 1 cut(s) 521
PsuI RGATCY 1 cut(s) 595
PsyI GACNNNGTC 1 cut(s) 493
RsaI GTAC 5 cut(s) 38, 181, 187, 193, 199
RsaNI GTAC 5 cut(s) 37, 180, 186, 192, 198
SapI GCTCTTC 1 cut(s) 589
SaqAI TTAA 1 cut(s) 384
Sau3AI GATC 2 cut(s) 105, 595
Sau96I GGNCC 4 cut(s) 62, 77, 419, 489
ScaI AGTACT 5 cut(s) 38, 181, 187, 193, 199
SchI GAGTC 2 cut(s) 608, 622
ScrFI CCNGG 5 cut(s) 47, 66, 71, 547, 650
SfaNI GCATC 2 cut(s) 268, 648
SfcI CTRYAG 1 cut(s) 40
SfuI TTCGAA 1 cut(s) 209
SinI GGWCC 3 cut(s) 77, 419, 489
SpeI ACTAGT 4 cut(s) 176, 182, 188, 194
Sse9I AATT 6 cut(s) 109, 290, 342, 467, 503, 540
SsiI CCGC 1 cut(s) 263
SspMI CTAG 8 cut(s) 177, 183, 189, 195, 258, 447, 510, 624
StyD4I CCNGG 5 cut(s) 45, 64, 69, 545, 648
TaaI ACNGT 2 cut(s) 305, 493
TaqI TCGA 1 cut(s) 209
TasI AATT 6 cut(s) 109, 290, 342, 467, 503, 540
TatI WGTACW 5 cut(s) 36, 179, 185, 191, 197
TfiI GAWTC 1 cut(s) 266
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TspDTI ATGAA 1 cut(s) 387
Tth111I GACNNNGTC 1 cut(s) 493
VpaK11BI GGWCC 3 cut(s) 77, 419, 489
XapI RAATTY 2 cut(s) 290, 467
XmiI GTMKAC 1 cut(s) 139
XspI CTAG 8 cut(s) 177, 183, 189, 195, 258, 447, 510, 624
ZrmI AGTACT 5 cut(s) 38, 181, 187, 193, 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.