Rh6AG324500

Proline-rich nuclear receptor coactivator motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0011970
Physical Location & Seq
Reverse (-)
52513027 .. 52513689
663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG324500.1

Sequence Viewer

Length: 663 bp
ATGGAGACCCTTCTTGTTGTGGAGCATAAGAACCAGTACTACAGCCGGGTCAAGCCACATGGGCCGGGCCGGGTCGGACCCTCGCCGTCCAAGAGCTTCCGAGGGATCAATTGCCGGACTTTCCAATCCGGCACAGGTATACTACCGACCCCTCCTCCATTGAAGTCGTCTTCTACTACTGCTAGTACTAGTACTCCTGTTTCGAAAAAACCATGCCCCCCTTCTGCTTATTCACCCAAGACACCTACACCTAGTGCGGATTCACAGTTTGATGCTGAGCCTAAATTTTACTCTGACAGTAAAGCTGTGAGTAGAAGCAATGTGAGAACCAACCCAATTCCTATCAATGCCCGAAACCTGAAGAAAGAGAAGCCTTTTAATGAGAGTTTTTCATTTTCGGAACTCTGGGCTGGTCCTGCTTACTCAAACTCTCCCCCACCTAGTTCTTTGCCAATACCCAAATTTTCAGTTAGGCCAAACAGGACCGTGTCGCTTGAATTGCCTAGCTCAGTTTCTGCTATTGAAATGCACCCAATTGCCAGGTCTGCACCCCCGTCCCCGACCAGAGAGCATAGCTCTTCCAAAAGAGATCTCTTTCACAATGCTGACTCAGCCACTAGGACTCTGCGTCGCATCCTCAACCTGGATGTTGACGACGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNRC

Protein Analysis

220

Amino Acids

24.03

Weight (kDa)

9.87

Isoelectric Point (pI)

64.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNRC PF15365 136 - 155 2.5e-07 Proline-rich nuclear receptor coactivator motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011970)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02715 AT4G02715
fragaria_vesca FvH4_2g23281
malus_domestica MD03G1262100.v1.1 MD11G1282800.v1.1
prunus_persica Prupe.8G238400_v2.0.a1
pyrus_communis pycom03g20990 pycom11g25050
rosa_chinensis RchiOBHm_Chr6g0290651
rosa_laevigata RLG00000012187
rosa_multiflora Rmu_co8113914.1_g000001 Rmu_sc0006791.1_g000005
rosa_roxburghii Rroxscaffold_7G00176830
rosa_rugosa Rorug06G0214000
rosa_samantha Rh6AG324500 Rh6BG332100 Rh6CG337800 Rh6DG325200
rosa_wichuraiana Rw6G028170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 139
AciI CCGC 1 cut(s) 257
AclWI GGATC 1 cut(s) 113
AcsI RAATTY 2 cut(s) 284, 461
AcuI CTGAAG 1 cut(s) 380
AdeI CACNNNGTG 1 cut(s) 254
AfaI GTAC 3 cut(s) 38, 187, 193
AfiI CCNNNNNNNGG 1 cut(s) 643
AgsI TTSAA 3 cut(s) 163, 497, 524
AhdI GACNNNNNGTC 1 cut(s) 627
AhlI ACTAGT 1 cut(s) 188
AjnI CCWGG 2 cut(s) 539, 642
AluBI AGCT 4 cut(s) 96, 305, 507, 576
AluI AGCT 4 cut(s) 96, 305, 507, 576
AlwI GGATC 1 cut(s) 113
AlwNI CAGNNNCTG 1 cut(s) 515
AoxI GGCC 3 cut(s) 62, 67, 473
ApoI RAATTY 2 cut(s) 284, 461
AspS9I GGNCC 5 cut(s) 62, 67, 77, 413, 483
AsuC2I CCSGG 3 cut(s) 47, 66, 71
AsuHPI GGTGA 1 cut(s) 225
AsuII TTCGAA 1 cut(s) 203
AvaII GGWCC 3 cut(s) 77, 413, 483
BbsI GAAGAC 1 cut(s) 162
BceAI ACGGC 1 cut(s) 70
BciT130I CCWGG 2 cut(s) 541, 644
BcnI CCSGG 3 cut(s) 47, 66, 71
BcuI ACTAGT 1 cut(s) 188
BfaI CTAG 6 cut(s) 183, 189, 252, 441, 504, 618
BfmI CTRYAG 1 cut(s) 40
BglI GCCNNNNNGGC 1 cut(s) 61
BglII AGATCT 1 cut(s) 589
BlpI GCTNAGC 1 cut(s) 276
BmcAI AGTACT 3 cut(s) 38, 187, 193
Bme1390I CCNGG 5 cut(s) 47, 66, 71, 541, 644
Bme18I GGWCC 3 cut(s) 77, 413, 483
BmeRI GACNNNNNGTC 1 cut(s) 627
BmgT120I GGNCC 5 cut(s) 62, 67, 77, 413, 483
BmiI GGNNCC 1 cut(s) 79
BmrFI CCNGG 5 cut(s) 47, 66, 71, 541, 644
BmsI GCATC 2 cut(s) 262, 642
BpiI GAAGAC 1 cut(s) 162
BplI GAGNNNNNCTC 2 cut(s) 560, 592
Bpu1102I GCTNAGC 1 cut(s) 276
Bpu14I TTCGAA 1 cut(s) 203
BpuMI CCSGG 3 cut(s) 47, 66, 71
BsaJI CCNNGG 1 cut(s) 100
BsaXI ACNNNNNCTCC 4 cut(s) 139, 169, 178, 208
Bsc4I CCNNNNNNNGG 1 cut(s) 643
Bse1I ACTGG 1 cut(s) 34
Bse3DI GCAATG 1 cut(s) 325
BseBI CCWGG 2 cut(s) 541, 644
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 2 cut(s) 633, 652
BseLI CCNNNNNNNGG 1 cut(s) 643
BseMI GCAATG 1 cut(s) 325
BseMII CTCAG 3 cut(s) 267, 522, 624
BseNI ACTGG 1 cut(s) 34
BseRI GAGGAG 1 cut(s) 144
BsgI GTGCAG 1 cut(s) 531
BshFI GGCC 3 cut(s) 64, 69, 475
BsiSI CCGG 5 cut(s) 46, 65, 70, 115, 129
BslFI GGGAC 1 cut(s) 541
BslI CCNNNNNNNGG 1 cut(s) 643
BsmFI GGGAC 1 cut(s) 541
BsnI GGCC 3 cut(s) 64, 69, 475
Bsp119I TTCGAA 1 cut(s) 203
Bsp143I GATC 2 cut(s) 105, 589
Bsp1720I GCTNAGC 1 cut(s) 276
BspACI CCGC 1 cut(s) 257
BspANI GGCC 3 cut(s) 64, 69, 475
BspCNI CTCAG 3 cut(s) 268, 521, 623
BspLI GGNNCC 1 cut(s) 79
BspPI GGATC 1 cut(s) 113
BspQI GCTCTTC 1 cut(s) 583
BspT104I TTCGAA 1 cut(s) 203
BsrDI GCAATG 1 cut(s) 325
BsrI ACTGG 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 2 cut(s) 105, 589
BssNAI GTATAC 1 cut(s) 140
Bst1107I GTATAC 1 cut(s) 140
Bst2UI CCWGG 2 cut(s) 541, 644
Bst4CI ACNGT 3 cut(s) 267, 299, 487
Bst6I CTCTTC 1 cut(s) 583
BstBI TTCGAA 1 cut(s) 203
BstDEI CTNAG 3 cut(s) 276, 508, 610
BstF5I GGATG 2 cut(s) 633, 652
BstKTI GATC 2 cut(s) 108, 592
BstMBI GATC 2 cut(s) 105, 589
BstMWI GCNNNNNNNGC 5 cut(s) 61, 416, 499, 545, 611
BstNI CCWGG 2 cut(s) 541, 644
BstSCI CCNGG 5 cut(s) 45, 64, 69, 539, 642
BstSFI CTRYAG 1 cut(s) 40
BstV2I GAAGAC 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 589
BstYI RGATCY 1 cut(s) 589
BstZ17I GTATAC 1 cut(s) 140
BsuRI GGCC 3 cut(s) 64, 69, 475
BtsCI GGATG 2 cut(s) 633, 652
CaiI CAGNNNCTG 1 cut(s) 515
Cfr13I GGNCC 5 cut(s) 62, 67, 77, 413, 483
CseI GACGC 1 cut(s) 617
Csp6I GTAC 3 cut(s) 37, 186, 192
CviAII CATG 2 cut(s) 59, 213
CviQI GTAC 3 cut(s) 37, 186, 192
DdeI CTNAG 3 cut(s) 276, 508, 610
DpnI GATC 2 cut(s) 107, 591
DpnII GATC 2 cut(s) 105, 589
DraIII CACNNNGTG 1 cut(s) 254
DriI GACNNNNNGTC 1 cut(s) 627
Eam1104I CTCTTC 1 cut(s) 583
Eam1105I GACNNNNNGTC 1 cut(s) 627
EarI CTCTTC 1 cut(s) 583
Eco47I GGWCC 3 cut(s) 77, 413, 483
Eco57I CTGAAG 1 cut(s) 380
EcoRII CCWGG 2 cut(s) 539, 642
FaeI CATG 2 cut(s) 62, 216
FaiI YATR 5 cut(s) 27, 60, 140, 214, 573
FaqI GGGAC 1 cut(s) 541
FatI CATG 2 cut(s) 58, 212
FblI GTMKAC 1 cut(s) 139
FokI GGATG 2 cut(s) 620, 659
FspBI CTAG 6 cut(s) 183, 189, 252, 441, 504, 618
HaeIII GGCC 3 cut(s) 64, 69, 475
HapII CCGG 5 cut(s) 46, 65, 70, 115, 129
HgaI GACGC 1 cut(s) 617
Hin1II CATG 2 cut(s) 62, 216
HincII GTYRAC 1 cut(s) 652
HindII GTYRAC 1 cut(s) 652
HinfI GANTC 3 cut(s) 260, 608, 622
HpaII CCGG 5 cut(s) 46, 65, 70, 115, 129
HphI GGTGA 1 cut(s) 225
Hpy166II GTNNAC 2 cut(s) 140, 652
Hpy188I TCNGA 4 cut(s) 77, 101, 295, 400
Hpy8I GTNNAC 2 cut(s) 140, 652
Hpy99I CGWCG 2 cut(s) 633, 659
HpyAV CCTTC 2 cut(s) 20, 231
HpyCH4III ACNGT 3 cut(s) 267, 299, 487
HpyCH4V TGCA 2 cut(s) 529, 548
HpyF10VI GCNNNNNNNGC 5 cut(s) 61, 416, 499, 545, 611
HpyF3I CTNAG 3 cut(s) 276, 508, 610
Hsp92II CATG 2 cut(s) 62, 216
Kzo9I GATC 2 cut(s) 105, 589
LguI GCTCTTC 1 cut(s) 583
LmnI GCTCC 1 cut(s) 22
LweI GCATC 2 cut(s) 262, 642
MaeI CTAG 6 cut(s) 183, 189, 252, 441, 504, 618
MalI GATC 2 cut(s) 107, 591
MboI GATC 2 cut(s) 105, 589
MboII GAAGA 3 cut(s) 162, 373, 570
MfeI CAATTG 2 cut(s) 109, 534
MflI RGATCY 1 cut(s) 589
MluCI AATT 6 cut(s) 109, 284, 336, 461, 497, 534
MlyI GAGTC 2 cut(s) 602, 616
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 5 cut(s) 91, 95, 162, 165, 647
MseI TTAA 1 cut(s) 378
MspI CCGG 5 cut(s) 46, 65, 70, 115, 129
MspR9I CCNGG 5 cut(s) 47, 66, 71, 541, 644
MunI CAATTG 2 cut(s) 109, 534
MvaI CCWGG 2 cut(s) 541, 644
MwoI GCNNNNNNNGC 5 cut(s) 61, 416, 499, 545, 611
NciI CCSGG 3 cut(s) 47, 66, 71
NdeII GATC 2 cut(s) 105, 589
NlaIII CATG 2 cut(s) 62, 216
NlaIV GGNNCC 1 cut(s) 79
NspV TTCGAA 1 cut(s) 203
PciSI GCTCTTC 1 cut(s) 583
PfeI GAWTC 1 cut(s) 260
PflFI GACNNNGTC 1 cut(s) 487
PleI GAGTC 2 cut(s) 602, 616
PpsI GAGTC 2 cut(s) 602, 616
Psp6I CCWGG 2 cut(s) 539, 642
PspGI CCWGG 2 cut(s) 539, 642
PspN4I GGNNCC 1 cut(s) 79
PspPI GGNCC 5 cut(s) 62, 67, 77, 413, 483
PsrI GAACNNNNNNTAC 2 cut(s) 23, 55
PstNI CAGNNNCTG 1 cut(s) 515
PsuI RGATCY 1 cut(s) 589
PsyI GACNNNGTC 1 cut(s) 487
RsaI GTAC 3 cut(s) 38, 187, 193
RsaNI GTAC 3 cut(s) 37, 186, 192
SapI GCTCTTC 1 cut(s) 583
SaqAI TTAA 1 cut(s) 378
Sau3AI GATC 2 cut(s) 105, 589
Sau96I GGNCC 5 cut(s) 62, 67, 77, 413, 483
ScaI AGTACT 3 cut(s) 38, 187, 193
SchI GAGTC 2 cut(s) 602, 616
ScrFI CCNGG 5 cut(s) 47, 66, 71, 541, 644
SfaNI GCATC 2 cut(s) 262, 642
SfcI CTRYAG 1 cut(s) 40
SfuI TTCGAA 1 cut(s) 203
SinI GGWCC 3 cut(s) 77, 413, 483
SpeI ACTAGT 1 cut(s) 188
Sse9I AATT 6 cut(s) 109, 284, 336, 461, 497, 534
SsiI CCGC 1 cut(s) 257
SspMI CTAG 6 cut(s) 183, 189, 252, 441, 504, 618
StyD4I CCNGG 5 cut(s) 45, 64, 69, 539, 642
TaaI ACNGT 3 cut(s) 267, 299, 487
TaqI TCGA 1 cut(s) 203
TasI AATT 6 cut(s) 109, 284, 336, 461, 497, 534
TatI WGTACW 3 cut(s) 36, 185, 191
TfiI GAWTC 1 cut(s) 260
Tru1I TTAA 1 cut(s) 378
Tru9I TTAA 1 cut(s) 378
TspDTI ATGAA 1 cut(s) 381
Tth111I GACNNNGTC 1 cut(s) 487
VpaK11BI GGWCC 3 cut(s) 77, 413, 483
XapI RAATTY 2 cut(s) 284, 461
XmiI GTMKAC 1 cut(s) 139
XspI CTAG 6 cut(s) 183, 189, 252, 441, 504, 618
ZrmI AGTACT 3 cut(s) 38, 187, 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.