AT4G02880

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
1274465 .. 1278718
4254 bp
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UTR
Exon/CDS
Intron
AT4G02880.1

Sequence Viewer

Length: 1659 bp
ATGGGTTACAAAGCAGTTTACCGATCTCTCACGGAATTGTTTCCACAGATTGATGCAAGGCTTTTAAAAGCTGTTGCTATTGAGCACCCAAAGGATGTTAATGAAGCTGCAGCTGTAGTTGTTTCAGAGATTGTTCCTTTCTTTTACCCTAATTTGGCTGATAGTTCTACTCAACCTGAGAACAAGACACCCGGAAATGTGCCTACCGAAGTAGAACGTGATATGCCATTCAGTGTGTTGTCTGGTTCAGAGATGGGTGGTTCATATTCAGGATCTGCCTCTATGGCTTTTGAATATCATGAAACAAGGGCCCCAGTTACTGAATCGGTTTCTAAGAGGAATCAGTTGACACATGTTATGCCAAATGTTGTTGTTGATATTCAGAGAAAAGGTAAGATCGGGTTGAGCGGATCGGATGAGTCTGGAGTGGTTTCCTCAGAACCCCCTGTCTCCTGTCAGGCAGGAGCCAAATCGACTGGCGATGATTGGCAAGGTGTTGAGTTTCACAGTACAGGTAATCAAGCAGAAGCTAGCACAAGCGCAGATTCAGAAGATGCTGTGCATAAGCTGGTTTATCCTGCAGACAATTTGGCAATTACACAGAACTCACATCCTCTTCAAATTAGATTTGGGAGTATCGATGTTGTGAACGAGACATCAAGTGGTTCGTTGGCTGTTGAAAATAGTGATGCCGAGTTGAGTGGTTCAAATCTTGTGGATGAGATATCAAAGGGCTCTTTGGCCGATGAAAATGGTGATCCAGAGCTGGATGGTGCTGTTAGCTCTGTTGGTAACAGATCAACCCAGGGATGCAACATGGTCCACCTTGAACAGATCATTGAAGATGCCAAAAGTAACAAGAGAACCTTGTTCACTGTGATGGAGTCGATTATGAATCTGATGAGAGAAGTTGAACTTCAAGAGAAGGAGGCAGAAAAGGCAAAGGAAGATGCTAGTATAGGAGGCTTTGATACTCTTGACAAGGTGGAGGAGCTGAAGAAGATGCTGGAACATGCGAAGGAGGCAAATGACATGGCTGCTGGAGAAGTTTATGGGGAGAGGTCAATTTTGACCACTGAAGTTAATGAGCTTGAAAATCGCTTGATCAGCTTATCAGAAGAACGAGACAACTCTCTCTCTGTTCTTGATGAGATGCGTGTAGATCTTGAAATAAGACTAGCGACAGCTTTGGGGATAAAAAATGCTGCTGAGCAAGAAAAACAGGAAAAAGAAGGGTCTGCACGCAAGGCATTTGCTGAACAAGAAGCGATCATGGAGAGAGTTGTCCAAGAATCCAAGCTTCTACAGCAGGAGGCAGAGGAAAACTCCAAGCTGCGAGAGTTCCTTATGGATCATGGTCGAATTGTTGATTCCTTACAAGGAGAAATCTCTGTGATCTGTCAAGACATCCGACACTTGAAAGAGAAATTCGACAACCGAGTGCCATTGAGCCAATCAATCTCCTCAAGCCAGACTAGCTGTAAACTGGCTTCTTCCGCCTCATCCATGAAGAGCTTATTGACGGAGAAGCCTTTGGAAGCATCTTATGAAACACCTGAAGCCTCGAGCAATAACAAGAGCCCAAAAGCTTCTGTTAATGAACGTAAGGAGCTTCTGGATGACGGCTGGGACTTCTTTGACAAAGAGACAGAGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

552

Amino Acids

60.38

Weight (kDa)

4.63

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 408
AciI CCGC 2 cut(s) 408, 1497
AclWI GGATC 4 cut(s) 280, 418, 752, 1359
AcoI YGGCCR 1 cut(s) 741
AcsI RAATTY 1 cut(s) 1427
AcuI CTGAAG 3 cut(s) 1016, 1098, 1578
AfaI GTAC 1 cut(s) 511
AfiI CCNNNNNNNGG 1 cut(s) 154
AflIII ACRYGT 1 cut(s) 352
AjnI CCWGG 1 cut(s) 804
Alw21I GWGCWC 2 cut(s) 87, 1656
Alw26I GTCTC 4 cut(s) 454, 647, 1119, 1640
AlwI GGATC 4 cut(s) 280, 418, 752, 1359
AlwNI CAGNNNCTG 2 cut(s) 275, 320
Ama87I CYCGRG 1 cut(s) 1564
AoxI GGCC 2 cut(s) 309, 741
ApaI GGGCCC 1 cut(s) 313
ApeKI GCWGC 5 cut(s) 107, 110, 1037, 1205, 1333
ApoI RAATTY 1 cut(s) 1427
Asp700I GAANNNNTTC 1 cut(s) 39
AspLEI GCGC 1 cut(s) 542
AspS9I GGNCC 3 cut(s) 309, 310, 820
AsuC2I CCSGG 1 cut(s) 192
AsuHPI GGTGA 1 cut(s) 767
AsuNHI GCTAGC 1 cut(s) 530
AvaI CYCGRG 1 cut(s) 1564
AvaII GGWCC 1 cut(s) 820
BaeGI GKGCMC 1 cut(s) 313
BanII GRGCYC 4 cut(s) 313, 737, 1583, 1656
BarI GAAGNNNNNNTAC 2 cut(s) 1474, 1506
Bbv12I GWGCWC 2 cut(s) 87, 1656
BbvI GCAGC 5 cut(s) 94, 122, 1024, 1192, 1320
BccI CCATC 3 cut(s) 247, 764, 874
BceAI ACGGC 1 cut(s) 1639
BciT130I CCWGG 1 cut(s) 806
BclI TGATCA 1 cut(s) 1104
BcnI CCSGG 1 cut(s) 192
BcoDI GTCTC 4 cut(s) 454, 647, 1119, 1640
BfaI CTAG 4 cut(s) 531, 954, 1178, 1476
BfmI CTRYAG 4 cut(s) 108, 114, 579, 1304
BglI GCCNNNNNGGC 1 cut(s) 284
BglII AGATCT 1 cut(s) 1162
BisI GCNGC 5 cut(s) 108, 111, 1038, 1206, 1334
BlpI GCTNAGC 1 cut(s) 1209
BlsI GCNGC 5 cut(s) 109, 112, 1039, 1207, 1335
Bme1390I CCNGG 2 cut(s) 192, 806
Bme18I GGWCC 1 cut(s) 820
BmeT110I CYCGRG 1 cut(s) 1564
BmgT120I GGNCC 3 cut(s) 309, 310, 820
BmiI GGNNCC 3 cut(s) 311, 312, 466
BmrFI CCNGG 2 cut(s) 192, 806
BmrI ACTGGG 1 cut(s) 308
BmsI GCATC 9 cut(s) 43, 544, 679, 800, 835, 940, 993, 1143, 1550
BmtI GCTAGC 1 cut(s) 534
BmuI ACTGGG 1 cut(s) 308
BplI GAGNNNNNCTC 2 cut(s) 1310, 1342
BpmI CTGGAG 2 cut(s) 444, 1062
Bpu1102I GCTNAGC 1 cut(s) 1209
BpuEI CTTGAG 1 cut(s) 1450
BpuMI CCSGG 1 cut(s) 192
Bsa29I ATCGAT 1 cut(s) 639
BsaJI CCNNGG 2 cut(s) 804, 805
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse1I ACTGG 3 cut(s) 314, 481, 1491
BseBI CCWGG 1 cut(s) 806
BseCI ATCGAT 1 cut(s) 639
BseDI CCNNGG 2 cut(s) 804, 805
BseGI GGATG 9 cut(s) 100, 421, 610, 724, 775, 815, 1407, 1502, 1624
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMII CTCAG 3 cut(s) 168, 450, 1200
BseNI ACTGG 3 cut(s) 314, 481, 1491
BseRI GAGGAG 2 cut(s) 1004, 1453
BseSI GKGCMC 1 cut(s) 313
BseXI GCAGC 5 cut(s) 94, 122, 1024, 1192, 1320
BseYI CCCAGC 1 cut(s) 1626
BsgI GTGCAG 1 cut(s) 1224
BshFI GGCC 2 cut(s) 311, 743
BshVI ATCGAT 1 cut(s) 639
BsiHKAI GWGCWC 2 cut(s) 87, 1656
BsiHKCI CYCGRG 1 cut(s) 1564
BsiSI CCGG 1 cut(s) 192
BslFI GGGAC 1 cut(s) 1643
BslI CCNNNNNNNGG 1 cut(s) 154
BsmAI GTCTC 4 cut(s) 454, 647, 1119, 1640
BsmFI GGGAC 1 cut(s) 1643
BsnI GGCC 2 cut(s) 311, 743
BsoBI CYCGRG 1 cut(s) 1564
Bsp120I GGGCCC 1 cut(s) 309
Bsp1286I GDGCHC 5 cut(s) 87, 313, 737, 1583, 1656
Bsp1720I GCTNAGC 1 cut(s) 1209
BspACI CCGC 2 cut(s) 408, 1497
BspANI GGCC 2 cut(s) 311, 743
BspCNI CTCAG 3 cut(s) 169, 449, 1201
BspDI ATCGAT 1 cut(s) 639
BspHI TCATGA 1 cut(s) 298
BspLI GGNNCC 3 cut(s) 311, 312, 466
BspMAI CTGCAG 2 cut(s) 112, 583
BspOI GCTAGC 1 cut(s) 534
BspPI GGATC 4 cut(s) 280, 418, 752, 1359
BspQI GCTCTTC 1 cut(s) 1505
BsrBI CCGCTC 1 cut(s) 408
BsrI ACTGG 3 cut(s) 314, 481, 1491
BssECI CCNNGG 2 cut(s) 804, 805
Bst2UI CCWGG 1 cut(s) 806
Bst4CI ACNGT 2 cut(s) 509, 877
Bst6I CTCTTC 2 cut(s) 621, 1505
BstC8I GCNNGC 2 cut(s) 532, 1243
BstDEI CTNAG 4 cut(s) 177, 333, 436, 1209
BstF5I GGATG 9 cut(s) 100, 421, 610, 724, 775, 815, 1407, 1502, 1624
BstHHI GCGC 1 cut(s) 542
BstMAI GTCTC 4 cut(s) 454, 647, 1119, 1640
BstMWI GCNNNNNNNGC 8 cut(s) 284, 938, 1022, 1107, 1247, 1306, 1476, 1496
BstNI CCWGG 1 cut(s) 806
BstNSI RCATGY 2 cut(s) 356, 1016
BstSCI CCNGG 2 cut(s) 190, 804
BstSFI CTRYAG 4 cut(s) 108, 114, 579, 1304
BstSLI GKGCMC 1 cut(s) 313
BstV1I GCAGC 5 cut(s) 94, 122, 1024, 1192, 1320
BstX2I RGATCY 2 cut(s) 272, 1162
BstYI RGATCY 2 cut(s) 272, 1162
Bsu15I ATCGAT 1 cut(s) 639
BsuRI GGCC 2 cut(s) 311, 743
BsuTUI ATCGAT 1 cut(s) 639
BtgZI GCGATG 1 cut(s) 495
BtsCI GGATG 9 cut(s) 100, 421, 610, 724, 775, 815, 1407, 1502, 1624
BtsIMutI CAGTG 3 cut(s) 238, 873, 1074
Cac8I GCNNGC 2 cut(s) 532, 1243
CaiI CAGNNNCTG 2 cut(s) 275, 320
CciI TCATGA 1 cut(s) 298
CfoI GCGC 1 cut(s) 542
Cfr13I GGNCC 3 cut(s) 309, 310, 820
ClaI ATCGAT 1 cut(s) 639
Csp6I GTAC 1 cut(s) 510
CspCI CAANNNNNGTGG 2 cut(s) 696, 731
CviAII CATG 8 cut(s) 299, 353, 817, 1013, 1033, 1273, 1355, 1507
CviQI GTAC 1 cut(s) 510
DdeI CTNAG 4 cut(s) 177, 333, 436, 1209
DraI TTTAAA 1 cut(s) 66
EaeI YGGCCR 1 cut(s) 741
Eam1104I CTCTTC 2 cut(s) 621, 1505
EarI CTCTTC 2 cut(s) 621, 1505
EciI GGCGGA 1 cut(s) 1486
Ecl136II GAGCTC 1 cut(s) 1654
Eco24I GRGCYC 4 cut(s) 313, 737, 1583, 1656
Eco32I GATATC 1 cut(s) 726
Eco47I GGWCC 1 cut(s) 820
Eco53kI GAGCTC 1 cut(s) 1654
Eco57I CTGAAG 3 cut(s) 1016, 1098, 1578
Eco88I CYCGRG 1 cut(s) 1564
EcoICRI GAGCTC 1 cut(s) 1654
EcoO109I RGGNCCY 2 cut(s) 309, 310
EcoRII CCWGG 1 cut(s) 804
EcoRV GATATC 1 cut(s) 726
EcoT38I GRGCYC 4 cut(s) 313, 737, 1583, 1656
FaeI CATG 8 cut(s) 302, 356, 820, 1016, 1036, 1276, 1358, 1510
FalI AAGNNNNNCTT 4 cut(s) 851, 883, 900, 932
FaqI GGGAC 1 cut(s) 1643
FatI CATG 8 cut(s) 298, 352, 816, 1012, 1032, 1272, 1354, 1506
FbaI TGATCA 1 cut(s) 1104
Fnu4HI GCNGC 5 cut(s) 108, 111, 1038, 1206, 1334
FokI GGATG 9 cut(s) 107, 428, 597, 731, 782, 822, 1394, 1489, 1631
FriOI GRGCYC 4 cut(s) 313, 737, 1583, 1656
Fsp4HI GCNGC 5 cut(s) 108, 111, 1038, 1206, 1334
FspBI CTAG 4 cut(s) 531, 954, 1178, 1476
GlaI GCGC 1 cut(s) 541
GluI GCNGC 5 cut(s) 108, 111, 1038, 1206, 1334
GsaI CCCAGC 1 cut(s) 1630
GsuI CTGGAG 2 cut(s) 444, 1062
HaeIII GGCC 2 cut(s) 311, 743
HapII CCGG 1 cut(s) 192
HhaI GCGC 1 cut(s) 542
Hin1II CATG 8 cut(s) 302, 356, 820, 1016, 1036, 1276, 1358, 1510
Hin6I GCGC 1 cut(s) 540
HinP1I GCGC 1 cut(s) 540
HincII GTYRAC 1 cut(s) 348
HindII GTYRAC 1 cut(s) 348
HindIII AAGCTT 2 cut(s) 1298, 1587
HinfI GANTC 8 cut(s) 323, 340, 419, 545, 884, 895, 1292, 1370
HpaII CCGG 1 cut(s) 192
HphI GGTGA 1 cut(s) 767
Hpy166II GTNNAC 6 cut(s) 19, 348, 649, 823, 873, 1484
Hpy188I TCNGA 9 cut(s) 127, 250, 384, 415, 439, 550, 900, 1117, 1412
Hpy8I GTNNAC 6 cut(s) 19, 348, 649, 823, 873, 1484
HpyAV CCTTC 3 cut(s) 919, 1012, 1226
HpyCH4III ACNGT 2 cut(s) 509, 877
HpyCH4IV ACGT 2 cut(s) 217, 1603
HpyCH4V TGCA 6 cut(s) 56, 110, 562, 581, 813, 1241
HpyF10VI GCNNNNNNNGC 8 cut(s) 284, 938, 1022, 1107, 1247, 1306, 1476, 1496
HpyF3I CTNAG 4 cut(s) 177, 333, 436, 1209
HpySE526I ACGT 2 cut(s) 217, 1603
Hsp92II CATG 8 cut(s) 302, 356, 820, 1016, 1036, 1276, 1358, 1510
HspAI GCGC 1 cut(s) 540
Ksp22I TGATCA 1 cut(s) 1104
LguI GCTCTTC 1 cut(s) 1505
LmnI GCTCC 3 cut(s) 464, 991, 1609
Lsp1109I GCAGC 5 cut(s) 94, 122, 1024, 1192, 1320
LweI GCATC 9 cut(s) 43, 544, 679, 800, 835, 940, 993, 1143, 1550
MaeI CTAG 4 cut(s) 531, 954, 1178, 1476
MaeII ACGT 2 cut(s) 217, 1603
MaeIII GTNAC 4 cut(s) 5, 316, 791, 854
MbiI CCGCTC 1 cut(s) 408
MboII GAAGA 9 cut(s) 563, 608, 854, 959, 1009, 1012, 1130, 1485, 1522
MflI RGATCY 2 cut(s) 272, 1162
MhlI GDGCHC 5 cut(s) 87, 313, 737, 1583, 1656
MluCI AATT 8 cut(s) 35, 151, 586, 594, 621, 1065, 1362, 1427
MlyI GAGTC 2 cut(s) 428, 893
MmeI TCCRAC 1 cut(s) 1435
MroXI GAANNNNTTC 1 cut(s) 39
MseI TTAA 4 cut(s) 65, 99, 1083, 1596
MslI CAYNNNNRTG 1 cut(s) 878
MspA1I CMGCKG 1 cut(s) 113
MspI CCGG 1 cut(s) 192
MspR9I CCNGG 2 cut(s) 192, 806
MvaI CCWGG 1 cut(s) 806
MwoI GCNNNNNNNGC 8 cut(s) 284, 938, 1022, 1107, 1247, 1306, 1476, 1496
NciI CCSGG 1 cut(s) 192
NheI GCTAGC 1 cut(s) 530
NlaIII CATG 8 cut(s) 302, 356, 820, 1016, 1036, 1276, 1358, 1510
NlaIV GGNNCC 3 cut(s) 311, 312, 466
NmeAIII GCCGAG 1 cut(s) 718
NspI RCATGY 2 cut(s) 356, 1016
PaeR7I CTCGAG 1 cut(s) 1564
PagI TCATGA 1 cut(s) 298
PasI CCCWGGG 1 cut(s) 805
PciI ACATGT 1 cut(s) 352
PciSI GCTCTTC 1 cut(s) 1505
PdmI GAANNNNTTC 1 cut(s) 39
PfeI GAWTC 6 cut(s) 323, 340, 545, 895, 1292, 1370
PkrI GCNGC 5 cut(s) 109, 112, 1039, 1207, 1335
PleI GAGTC 2 cut(s) 427, 892
PpsI GAGTC 2 cut(s) 427, 892
PscI ACATGT 1 cut(s) 352
Psp124BI GAGCTC 1 cut(s) 1656
Psp6I CCWGG 1 cut(s) 804
PspFI CCCAGC 1 cut(s) 1626
PspGI CCWGG 1 cut(s) 804
PspN4I GGNNCC 3 cut(s) 311, 312, 466
PspOMI GGGCCC 1 cut(s) 309
PspPI GGNCC 3 cut(s) 309, 310, 820
PspXI VCTCGAGB 1 cut(s) 1564
PstI CTGCAG 2 cut(s) 112, 583
PstNI CAGNNNCTG 2 cut(s) 275, 320
PsuI RGATCY 2 cut(s) 272, 1162
PvuII CAGCTG 1 cut(s) 113
RsaI GTAC 1 cut(s) 511
RsaNI GTAC 1 cut(s) 510
RseI CAYNNNNRTG 1 cut(s) 878
SacI GAGCTC 1 cut(s) 1656
SapI GCTCTTC 1 cut(s) 1505
SaqAI TTAA 4 cut(s) 65, 99, 1083, 1596
SatI GCNGC 5 cut(s) 108, 111, 1038, 1206, 1334
Sau96I GGNCC 3 cut(s) 309, 310, 820
SchI GAGTC 2 cut(s) 428, 893
ScrFI CCNGG 2 cut(s) 192, 806
SduI GDGCHC 5 cut(s) 87, 313, 737, 1583, 1656
SfaNI GCATC 9 cut(s) 43, 544, 679, 800, 835, 940, 993, 1143, 1550
SfcI CTRYAG 4 cut(s) 108, 114, 579, 1304
Sfr274I CTCGAG 1 cut(s) 1564
SinI GGWCC 1 cut(s) 820
SlaI CTCGAG 1 cut(s) 1564
SmiMI CAYNNNNRTG 1 cut(s) 878
SmlI CTYRAG 2 cut(s) 1465, 1564
SmoI CTYRAG 2 cut(s) 1465, 1564
Sse9I AATT 8 cut(s) 35, 151, 586, 594, 621, 1065, 1362, 1427
SsiI CCGC 2 cut(s) 408, 1497
SspMI CTAG 4 cut(s) 531, 954, 1178, 1476
SstI GAGCTC 1 cut(s) 1656
StyD4I CCNGG 2 cut(s) 190, 804
TaaI ACNGT 2 cut(s) 509, 877
TaiI ACGT 2 cut(s) 220, 1606
TaqI TCGA 6 cut(s) 473, 639, 887, 1360, 1431, 1565
TasI AATT 8 cut(s) 35, 151, 586, 594, 621, 1065, 1362, 1427
TatI WGTACW 1 cut(s) 509
TfiI GAWTC 6 cut(s) 323, 340, 545, 895, 1292, 1370
Tru1I TTAA 4 cut(s) 65, 99, 1083, 1596
Tru9I TTAA 4 cut(s) 65, 99, 1083, 1596
TscAI CASTG 3 cut(s) 238, 880, 1081
TseI GCWGC 5 cut(s) 107, 110, 1037, 1205, 1333
TspDTI ATGAA 8 cut(s) 117, 252, 315, 762, 908, 1523, 1563, 1614
TspGWI ACGGA 2 cut(s) 47, 1538
TspRI CASTG 3 cut(s) 238, 880, 1081
VpaK11BI GGWCC 1 cut(s) 820
XapI RAATTY 1 cut(s) 1427
XceI RCATGY 2 cut(s) 356, 1016
XhoI CTCGAG 1 cut(s) 1564
XmnI GAANNNNTTC 1 cut(s) 39
XspI CTAG 4 cut(s) 531, 954, 1178, 1476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.