pycom11g25660

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
28402322 .. 28406215
3894 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g25660.2

Sequence Viewer

Length: 1467 bp
ATGCACCAGCAGGTAATTAAGGAATCAGGGGTTCCAGAACCTGGACCGGCAGCTGGTGATGATCATACAAGTGGTGCCTCTCATGGCAACCCCACGCTGGTGAAGCAAGTGGACTCATTGCAGAATGGTCCTGTTCCATCAGATGCTGATACAAGTACCAGAAGTGAAGCAGTGATTTCTGATGTAAAGGGTATGAATTTTGATGTCCAAGTTGGGCTGCAGCAGTCTGCATCTGGCATGACGAGTCCTTCAATGCCTGAAAAAGATTCAGTAAACGGCACCTTGGTTGATGTGCTTCCTAAGTGGAAAAGTTTTTATTTCCCTGTGAATTGTGATTCCAATTCGGTGCTCCATGAAACACATGATAAAGTAGAATCATTTGCAGTTGATTCTTCTTTCAGAGAACATGCACCCAATGCTCCACAGTGTGACATTCCTCCAGAGTTTAGTTCAGGCCCTCTTTTTGCTGATGACAACTTACAGGCAACTGGTCCTTCGGATCATACTTCCGAGAAAGACTGTACTTCAAGGGAAATGGTTGATAATGACATTGAGGAGACTGCCACTAACAGCGTATGCAATATTGATGTTCTGGAAGAGATCATTGAAGATGCTAAACATAACAAGAAAACCCTGTTTTCAGCCATGGAATCGGTCATCAGCATGATGAGAGAAGTGGAGGTCCAGGAGAAAGCAGTGGATATTGTTCAAGAGGAAGCTTCTAGGGGAGGTTTGGATATCATGGTCAAGGTGGAGGACCTTAAACAGATGTTGGCACATGCAAAAGACGCAAATGACATGCATGCTGGAGAAGTCTTTGGGGAGAAAGCAATTTTAGCAACTGAAGCGAGGGAGCTTCAGTCTCGATTGCTCAATTTATCAGATGATAGAGATAAATCACTTGCGATTCTTAATGAGATGTGTGGAACCCTTGAGGAACGGCTAGATGCGGCAGCGGAGGCAAGGAGACTGGCCGAGCAGGACAAGCTAGAAAAGGAAGAATGTGCCTGGAAAGCTCTTGCTGAACAAGAAGCGGAGGTGGAGAAAGTTGTTCAGGAGTCCAAAATATTGCAACAACAGGCGGAGGAAAATTCGAAGTTACGGGAGTTTCTGATGGATCGTGGCCGCATTGTTGATATGCTACAAGGAGAAATTTCTGTTATTTGTCAGGATGTCAGGTTTCTGAAAGAGAAGTTTGATGAGCGGGTTCCGCTAAGCGAGTCAGTATCCTCGAGCCAGACGAGCTGTATCCTAGCTTCTTCAGGCTCATCCATGAAAAGCGTGGCATTCGATTTAGTTCCAGAACGACTTGAGTTACCAAAGTCGCCAGAGAAGGCAAGCCCCGCTCCTTCAGTTAACGGCCTATCACCAAAAAGCATACTCGAACAGGAAAGAACCAAGGCCGATCAAAAGGAACTTATCGACGATGGATGGGATGTTGTCTTCGACAAAGAATTGGACGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

489

Amino Acids

53.62

Weight (kDa)

4.52

Isoelectric Point (pI)

55.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1464
AccB1I GGYRCC 2 cut(s) 74, 278
AccB7I CCANNNNNTGG 1 cut(s) 41
AccBSI CCGCTC 2 cut(s) 1204, 1346
AciI CCGC 8 cut(s) 950, 956, 1034, 1082, 1126, 1204, 1211, 1344
AclWI GGATC 2 cut(s) 507, 1125
AcoI YGGCCR 2 cut(s) 972, 1123
AcsI RAATTY 3 cut(s) 196, 1090, 1152
AcuI CTGAAG 4 cut(s) 842, 864, 1245, 1335
AcyI GRCGYC 1 cut(s) 1461
AdeI CACNNNGTG 1 cut(s) 428
AfaI GTAC 2 cut(s) 157, 523
AfiI CCNNNNNNNGG 3 cut(s) 41, 53, 97
AgsI TTSAA 4 cut(s) 252, 528, 608, 710
AjnI CCWGG 3 cut(s) 40, 684, 1007
AleI CACNNNNGTG 1 cut(s) 98
AluBI AGCT 7 cut(s) 53, 719, 856, 988, 1016, 1245, 1256
AluI AGCT 7 cut(s) 53, 719, 856, 988, 1016, 1245, 1256
Alw21I GWGCWC 1 cut(s) 351
Alw26I GTCTC 3 cut(s) 551, 867, 961
AlwI GGATC 2 cut(s) 507, 1125
AlwNI CAGNNNCTG 2 cut(s) 41, 146
Ama87I CYCGRG 1 cut(s) 1231
AoxI GGCC 5 cut(s) 454, 972, 1123, 1360, 1401
ApeKI GCWGC 4 cut(s) 50, 217, 220, 953
ApoI RAATTY 3 cut(s) 196, 1090, 1152
AspS9I GGNCC 6 cut(s) 44, 128, 455, 491, 682, 757
AsuHPI GGTGA 3 cut(s) 68, 112, 1359
AsuII TTCGAA 1 cut(s) 1094
AvaI CYCGRG 1 cut(s) 1231
AvaII GGWCC 5 cut(s) 44, 128, 491, 682, 757
BanI GGYRCC 2 cut(s) 74, 278
BarI GAAGNNNNNNTAC 2 cut(s) 1240, 1272
BbsI GAAGAC 1 cut(s) 1435
Bbv12I GWGCWC 1 cut(s) 351
BbvI GCAGC 4 cut(s) 62, 204, 232, 965
BccI CCATC 4 cut(s) 145, 1108, 1421, 1425
BceAI ACGGC 3 cut(s) 292, 956, 1375
BciT130I CCWGG 3 cut(s) 42, 686, 1009
BciVI GTATCC 2 cut(s) 1237, 1259
BclI TGATCA 1 cut(s) 61
BcoDI GTCTC 3 cut(s) 551, 867, 961
BfaI CTAG 4 cut(s) 723, 944, 989, 1253
BfmI CTRYAG 1 cut(s) 218
BfuI GTATCC 2 cut(s) 1237, 1259
BisI GCNGC 6 cut(s) 51, 218, 221, 951, 954, 1126
BlpI GCTNAGC 1 cut(s) 1214
BlsI GCNGC 6 cut(s) 52, 219, 222, 952, 955, 1127
Bme1390I CCNGG 3 cut(s) 42, 686, 1009
Bme18I GGWCC 5 cut(s) 44, 128, 491, 682, 757
BmeT110I CYCGRG 1 cut(s) 1231
BmgT120I GGNCC 6 cut(s) 44, 128, 455, 491, 682, 757
BmiI GGNNCC 5 cut(s) 33, 76, 280, 928, 1209
BmrFI CCNGG 3 cut(s) 42, 686, 1009
BmsI GCATC 4 cut(s) 133, 239, 601, 937
BpiI GAAGAC 1 cut(s) 1435
BpmI CTGGAG 2 cut(s) 423, 828
Bpu1102I GCTNAGC 1 cut(s) 1214
Bpu14I TTCGAA 1 cut(s) 1094
BpuEI CTTGAG 2 cut(s) 953, 1331
BsaHI GRCGYC 1 cut(s) 1461
BsaJI CCNNGG 3 cut(s) 282, 645, 1398
BsaXI ACNNNNNCTCC 2 cut(s) 845, 875
Bsc4I CCNNNNNNNGG 3 cut(s) 41, 53, 97
Bse118I RCCGGY 1 cut(s) 46
Bse1I ACTGG 2 cut(s) 493, 975
Bse3DI GCAATG 1 cut(s) 116
BseBI CCWGG 3 cut(s) 42, 686, 1009
BseDI CCNNGG 3 cut(s) 282, 645, 1398
BseGI GGATG 4 cut(s) 1177, 1268, 1436, 1441
BseLI CCNNNNNNNGG 3 cut(s) 41, 53, 97
BseMI GCAATG 1 cut(s) 116
BseNI ACTGG 2 cut(s) 493, 975
BseRI GAGGAG 1 cut(s) 569
BseXI GCAGC 4 cut(s) 62, 204, 232, 965
BshFI GGCC 5 cut(s) 456, 974, 1125, 1362, 1403
BshNI GGYRCC 2 cut(s) 74, 278
BsiHKAI GWGCWC 1 cut(s) 351
BsiHKCI CYCGRG 1 cut(s) 1231
BsiSI CCGG 1 cut(s) 47
BslI CCNNNNNNNGG 3 cut(s) 41, 53, 97
BsmAI GTCTC 3 cut(s) 551, 867, 961
BsmI GAATGC 1 cut(s) 1286
BsnI GGCC 5 cut(s) 456, 974, 1125, 1362, 1403
BsoBI CYCGRG 1 cut(s) 1231
Bsp119I TTCGAA 1 cut(s) 1094
Bsp1286I GDGCHC 1 cut(s) 351
Bsp143I GATC 5 cut(s) 61, 499, 600, 1117, 1405
Bsp1720I GCTNAGC 1 cut(s) 1214
Bsp19I CCATGG 1 cut(s) 645
BspACI CCGC 8 cut(s) 950, 956, 1034, 1082, 1126, 1204, 1211, 1344
BspANI GGCC 5 cut(s) 456, 974, 1125, 1362, 1403
BspLI GGNNCC 5 cut(s) 33, 76, 280, 928, 1209
BspMAI CTGCAG 1 cut(s) 222
BspPI GGATC 2 cut(s) 507, 1125
BspT104I TTCGAA 1 cut(s) 1094
BspT107I GGYRCC 2 cut(s) 74, 278
BsrBI CCGCTC 2 cut(s) 1204, 1346
BsrDI GCAATG 1 cut(s) 116
BsrFI RCCGGY 1 cut(s) 46
BsrI ACTGG 2 cut(s) 493, 975
BssAI RCCGGY 1 cut(s) 46
BssECI CCNNGG 3 cut(s) 282, 645, 1398
BssMI GATC 5 cut(s) 61, 499, 600, 1117, 1405
BssNI GRCGYC 1 cut(s) 1461
BssT1I CCWWGG 3 cut(s) 282, 645, 1398
Bst2UI CCWGG 3 cut(s) 42, 686, 1009
Bst4CI ACNGT 2 cut(s) 426, 521
Bst6I CTCTTC 1 cut(s) 591
BstACI GRCGYC 1 cut(s) 1461
BstAPI GCANNNNNTGC 1 cut(s) 416
BstBI TTCGAA 1 cut(s) 1094
BstC8I GCNNGC 2 cut(s) 804, 1339
BstDEI CTNAG 2 cut(s) 300, 1214
BstDSI CCRYGG 1 cut(s) 645
BstF5I GGATG 4 cut(s) 1177, 1268, 1436, 1441
BstKTI GATC 5 cut(s) 64, 502, 603, 1120, 1408
BstMAI GTCTC 3 cut(s) 551, 867, 961
BstMBI GATC 5 cut(s) 61, 499, 600, 1117, 1405
BstNI CCWGG 3 cut(s) 42, 686, 1009
BstNSI RCATGY 4 cut(s) 410, 782, 802, 806
BstSCI CCNGG 3 cut(s) 40, 684, 1007
BstSFI CTRYAG 1 cut(s) 218
BstV1I GCAGC 4 cut(s) 62, 204, 232, 965
BstV2I GAAGAC 1 cut(s) 1435
BsuI GTATCC 2 cut(s) 1237, 1259
BsuRI GGCC 5 cut(s) 456, 974, 1125, 1362, 1403
BtgI CCRYGG 1 cut(s) 645
BtsCI GGATG 4 cut(s) 1177, 1268, 1436, 1441
BtsI GCAGTG 2 cut(s) 177, 702
BtsIMutI CAGTG 3 cut(s) 177, 431, 702
Cac8I GCNNGC 2 cut(s) 804, 1339
CaiI CAGNNNCTG 2 cut(s) 41, 146
Cfr10I RCCGGY 1 cut(s) 46
Cfr13I GGNCC 6 cut(s) 44, 128, 455, 491, 682, 757
CseI GACGC 1 cut(s) 797
Csp6I GTAC 2 cut(s) 156, 522
CviQI GTAC 2 cut(s) 156, 522
DdeI CTNAG 2 cut(s) 300, 1214
DpnI GATC 5 cut(s) 63, 501, 602, 1119, 1407
DpnII GATC 5 cut(s) 61, 499, 600, 1117, 1405
DraIII CACNNNGTG 1 cut(s) 428
EaeI YGGCCR 2 cut(s) 972, 1123
Eam1104I CTCTTC 1 cut(s) 591
EarI CTCTTC 1 cut(s) 591
EciI GGCGGA 1 cut(s) 1097
Eco130I CCWWGG 3 cut(s) 282, 645, 1398
Eco32I GATATC 1 cut(s) 739
Eco47I GGWCC 5 cut(s) 44, 128, 491, 682, 757
Eco57I CTGAAG 4 cut(s) 842, 864, 1245, 1335
Eco88I CYCGRG 1 cut(s) 1231
EcoO109I RGGNCCY 2 cut(s) 455, 757
EcoRII CCWGG 3 cut(s) 40, 684, 1007
EcoRV GATATC 1 cut(s) 739
EcoT14I CCWWGG 3 cut(s) 282, 645, 1398
EcoT22I ATGCAT 1 cut(s) 804
ErhI CCWWGG 3 cut(s) 282, 645, 1398
FauI CCCGC 2 cut(s) 1197, 1351
FbaI TGATCA 1 cut(s) 61
Fnu4HI GCNGC 6 cut(s) 51, 218, 221, 951, 954, 1126
FokI GGATG 4 cut(s) 1184, 1255, 1443, 1448
Fsp4HI GCNGC 6 cut(s) 51, 218, 221, 951, 954, 1126
FspBI CTAG 4 cut(s) 723, 944, 989, 1253
GluI GCNGC 6 cut(s) 51, 218, 221, 951, 954, 1126
GsuI CTGGAG 2 cut(s) 423, 828
HaeIII GGCC 5 cut(s) 456, 974, 1125, 1362, 1403
HapII CCGG 1 cut(s) 47
HgaI GACGC 1 cut(s) 797
Hin1I GRCGYC 1 cut(s) 1461
HincII GTYRAC 1 cut(s) 1357
HindII GTYRAC 1 cut(s) 1357
HindIII AAGCTT 1 cut(s) 717
HpaI GTTAAC 1 cut(s) 1357
HpaII CCGG 1 cut(s) 47
HphI GGTGA 3 cut(s) 68, 112, 1359
Hpy166II GTNNAC 3 cut(s) 112, 274, 1357
Hpy188I TCNGA 8 cut(s) 142, 181, 401, 499, 511, 883, 1113, 1185
Hpy188III TCNNGA 8 cut(s) 35, 440, 593, 710, 864, 1055, 1169, 1301
Hpy8I GTNNAC 3 cut(s) 112, 274, 1357
Hpy99I CGWCG 1 cut(s) 1427
HpyAV CCTTC 4 cut(s) 258, 504, 1327, 1359
HpyCH4III ACNGT 2 cut(s) 426, 521
HpyCH4IV ACGT 1 cut(s) 1461
HpyF3I CTNAG 2 cut(s) 300, 1214
HpySE526I ACGT 1 cut(s) 1461
Hsp92I GRCGYC 1 cut(s) 1461
Ksp22I TGATCA 1 cut(s) 61
KspAI GTTAAC 1 cut(s) 1357
Kzo9I GATC 5 cut(s) 61, 499, 600, 1117, 1405
LmnI GCTCC 4 cut(s) 354, 424, 853, 1351
Lsp1109I GCAGC 4 cut(s) 62, 204, 232, 965
LweI GCATC 4 cut(s) 133, 239, 601, 937
MaeI CTAG 4 cut(s) 723, 944, 989, 1253
MaeII ACGT 1 cut(s) 1461
MaeIII GTNAC 3 cut(s) 428, 1098, 1314
MalI GATC 5 cut(s) 63, 501, 602, 1119, 1407
MbiI CCGCTC 2 cut(s) 1204, 1346
MboI GATC 5 cut(s) 61, 499, 600, 1117, 1405
MboII GAAGA 6 cut(s) 384, 608, 620, 1010, 1251, 1435
MhlI GDGCHC 1 cut(s) 351
MluCI AATT 9 cut(s) 15, 196, 328, 340, 831, 874, 1090, 1152, 1454
MlyI GAGTC 4 cut(s) 107, 253, 1067, 1229
Mph1103I ATGCAT 1 cut(s) 804
MseI TTAA 4 cut(s) 18, 762, 912, 1356
MslI CAYNNNNRTG 3 cut(s) 69, 98, 662
MspA1I CMGCKG 2 cut(s) 53, 956
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 3 cut(s) 42, 686, 1009
Mva1269I GAATGC 1 cut(s) 1286
MvaI CCWGG 3 cut(s) 42, 686, 1009
NcoI CCATGG 1 cut(s) 645
NdeII GATC 5 cut(s) 61, 499, 600, 1117, 1405
NlaIV GGNNCC 5 cut(s) 33, 76, 280, 928, 1209
NmeAIII GCCGAG 1 cut(s) 1000
NmuCI GTSAC 1 cut(s) 428
NsiI ATGCAT 1 cut(s) 804
NspI RCATGY 4 cut(s) 410, 782, 802, 806
NspV TTCGAA 1 cut(s) 1094
OliI CACNNNNGTG 1 cut(s) 98
PaeI GCATGC 1 cut(s) 806
PaeR7I CTCGAG 1 cut(s) 1231
PcsI WCGNNNNNNNCGW 1 cut(s) 1238
PctI GAATGC 1 cut(s) 1286
PfeI GAWTC 7 cut(s) 23, 266, 335, 374, 389, 650, 907
PflMI CCANNNNNTGG 1 cut(s) 41
PfoI TCCNGGA 1 cut(s) 684
PkrI GCNGC 6 cut(s) 52, 219, 222, 952, 955, 1127
PleI GAGTC 4 cut(s) 107, 252, 1066, 1228
PpsI GAGTC 4 cut(s) 107, 252, 1066, 1228
PpuMI RGGWCCY 1 cut(s) 757
Psp5II RGGWCCY 1 cut(s) 757
Psp6I CCWGG 3 cut(s) 40, 684, 1007
PspGI CCWGG 3 cut(s) 40, 684, 1007
PspN4I GGNNCC 5 cut(s) 33, 76, 280, 928, 1209
PspPI GGNCC 6 cut(s) 44, 128, 455, 491, 682, 757
PspPPI RGGWCCY 1 cut(s) 757
PspXI VCTCGAGB 1 cut(s) 1231
PstI CTGCAG 1 cut(s) 222
PstNI CAGNNNCTG 2 cut(s) 41, 146
PvuII CAGCTG 1 cut(s) 53
RsaI GTAC 2 cut(s) 157, 523
RsaNI GTAC 2 cut(s) 156, 522
RseI CAYNNNNRTG 3 cut(s) 69, 98, 662
SaqAI TTAA 4 cut(s) 18, 762, 912, 1356
SatI GCNGC 6 cut(s) 51, 218, 221, 951, 954, 1126
Sau3AI GATC 5 cut(s) 61, 499, 600, 1117, 1405
Sau96I GGNCC 6 cut(s) 44, 128, 455, 491, 682, 757
SchI GAGTC 4 cut(s) 107, 253, 1067, 1229
ScrFI CCNGG 3 cut(s) 42, 686, 1009
SduI GDGCHC 1 cut(s) 351
SfaNI GCATC 4 cut(s) 133, 239, 601, 937
SfcI CTRYAG 1 cut(s) 218
Sfr274I CTCGAG 1 cut(s) 1231
SfuI TTCGAA 1 cut(s) 1094
SinI GGWCC 5 cut(s) 44, 128, 491, 682, 757
SlaI CTCGAG 1 cut(s) 1231
SmiMI CAYNNNNRTG 3 cut(s) 69, 98, 662
SmlI CTYRAG 3 cut(s) 932, 1231, 1310
SmoI CTYRAG 3 cut(s) 932, 1231, 1310
SphI GCATGC 1 cut(s) 806
Sse9I AATT 9 cut(s) 15, 196, 328, 340, 831, 874, 1090, 1152, 1454
SsiI CCGC 8 cut(s) 950, 956, 1034, 1082, 1126, 1204, 1211, 1344
SspI AATATT 2 cut(s) 583, 1068
SspMI CTAG 4 cut(s) 723, 944, 989, 1253
StyD4I CCNGG 3 cut(s) 40, 684, 1007
StyI CCWWGG 3 cut(s) 282, 645, 1398
TaaI ACNGT 2 cut(s) 426, 521
TaiI ACGT 1 cut(s) 1464
TaqI TCGA 7 cut(s) 865, 1094, 1232, 1290, 1383, 1422, 1446
TaqII GACCGA 1 cut(s) 643
TasI AATT 9 cut(s) 15, 196, 328, 340, 831, 874, 1090, 1152, 1454
TatI WGTACW 1 cut(s) 521
TauI GCSGC 2 cut(s) 953, 1128
TfiI GAWTC 7 cut(s) 23, 266, 335, 374, 389, 650, 907
Tru1I TTAA 4 cut(s) 18, 762, 912, 1356
Tru9I TTAA 4 cut(s) 18, 762, 912, 1356
TscAI CASTG 3 cut(s) 177, 431, 702
TseFI GTSAC 1 cut(s) 428
TseI GCWGC 4 cut(s) 50, 217, 220, 953
Tsp45I GTSAC 1 cut(s) 428
TspDTI ATGAA 3 cut(s) 209, 369, 1289
TspRI CASTG 3 cut(s) 177, 431, 702
Van91I CCANNNNNTGG 1 cut(s) 41
VpaK11BI GGWCC 5 cut(s) 44, 128, 491, 682, 757
XapI RAATTY 3 cut(s) 196, 1090, 1152
XceI RCATGY 4 cut(s) 410, 782, 802, 806
XcmI CCANNNNNNNNNTGG 1 cut(s) 1279
XhoI CTCGAG 1 cut(s) 1231
XspI CTAG 4 cut(s) 723, 944, 989, 1253
ZraI GACGTC 1 cut(s) 1462
Zsp2I ATGCAT 1 cut(s) 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.