Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005240

Physical Location & Seq

Genomic Coordinates Reverse (-)

35124342 .. 35189327

Gene Structure 64986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0219800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGTATTCTCGTACATACGGCTTAAGCGGTTTTGTTGGCTCCCTCTCACAGTCACACGTACTATAAATTCCGCTACTCACAGTTTCCATTTCCTCATCCAAAACAGTCTTTCAACTCTTTACTCTCAAAAACAGACAAACATTTCAACCATGTCCAACACTGCTGGCAAGGTGATCAAGTGCAAAGCTGCGGTGGCCTGGGAAGCTGGGAAGCCGCTGGTTATTGAGGAAGTGGAGGTGGCACCACCCCAGAAACATGAAGTGCGCTTGAAGATCCTCTTTACGGCTCTATGCCACACTGATGTATACTTCTGGGAAGCAAAGGGACAACATCCACTGTTCCCTCGGATTTTTGGTCATGAAGCTGGAGGAATCGTGGAAAGCGTAGGTGAGGGTGTAACTGAACTCAAACCGGGAGACCATGTCCTCCCGGTGTTCACTGGAGAATGCAAGGAGTGCACACATTGTAAGTCAGAGGAAAGCAACATGTGTGATCTCCTAAGGATTAATACCGACAGGGGTACTATGCTCAATGATGGCAAGAGCAGGTTTTCCAAGGATGGAAAGCCAATTTATCACTTTGTTGGTACCTCTACATTCAGTGAATACACTGTTTCACATGTTGGTTCCGTTGCGAAGATCAACCCTGCAGCGCCTCTTGACAAAGTTTGTATTCTTAGTTGCGGAGTTTGTACAGGTTTTGGTGCAACCGTAAATGTTGCAAAGCCGAAAAAGGGTTCATCTGTTGCCATTTTCGGATTGGGTGCTGTTGGTCTTGCTGCTGCGGAAGGTGCAAGGGTTTCTGGGGCTTCAAGGATCATTGGAGTTGATCTGAACTCCAACCGATTTGAGGAAGCCAAGAAGTTTGGGGTGAATGAATTTGTGAATCCAAAAGATCATAACAAACCTGTTCAGGAGGTGATAGCTGAGATGACCAATGGTGGAGTTGATAGGAGTGTTGAGTGCACTGGAAGCATCCAGGCTATGATCTCTGCCTTTGAATGTGTTCATGATGGTTGGGGGGTTGCTGTACTTGTTGGAGTGCCAAACAAAGACGATGCATTCAAAACCCATCCGATAAACTTCTTGAATGAGAGGACTCTGAAGGGTACTTTCTATGGTAACTACAAGCCCCGCACTGATCTACCTGGTGTTGTGGAGAAGTACATGAACAAGGAGATGGAATTGGACAAATTTATCACTCACTCTGTTTCTTTCTCTGAGATCAACAAGGCATTTGAGTACATGCTGGCAGGAGAGGGAATCCGGTGCATCATCCGCATGGAGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

430

Amino Acids

47.19

Weight (kDa)

7.91

Isoelectric Point (pI)

31.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	85 - 214	2.6e-19	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	256 - 387	6.9e-27	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03290 AT1G03290 AT1G03290 AT1G03290 AT1G03290 AT1G03290 AT4G02880 AT4G02880
fragaria_vesca	FvH4_2g23870 FvH4_2g23870 FvH4_2g23870 FvH4_2g23870
malus_domestica	MD03G1268400.v1.1 MD11G1289200.v1.1
prunus_persica	Prupe.8G244100_v2.0.a1 Prupe.8G244100_v2.0.a1
pyrus_communis	pycom03g21430 pycom11g25660
rosa_chinensis	RchiOBHm_Chr6g0291481
rosa_laevigata	RLG00000012112
rosa_multiflora	Rmu_sc0003296.1_g000006
rosa_roxburghii	Rroxscaffold_7G00176020
rosa_rugosa	Rorug06G0219800 Rorug06G0219900
rosa_samantha	Rh6AG332000 Rh6BG338900 Rh6CG345100 Rh6DG332300
rosa_wichuraiana	Rw6G028840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	537
Acc65I	GGTACC	1 cut(s)	587
AccB1I	GGYRCC	2 cut(s)	241, 587
AccI	GTMKAC	1 cut(s)	306
AciI	CCGC	8 cut(s)	28, 72, 191, 215, 684, 785, 1135, 1279
AclWI	GGATC	2 cut(s)	268, 824
AcsI	RAATTY	3 cut(s)	67, 878, 1193
AcuI	CTGAAG	1 cut(s)	1124
AfaI	GTAC	9 cut(s)	14, 61, 523, 589, 694, 1032, 1111, 1166, 1244
AfiI	CCNNNNNNNGG	3 cut(s)	283, 734, 850
AflII	CTTAAG	1 cut(s)	23
AflIII	ACRYGT	3 cut(s)	56, 486, 619
AgsI	TTSAA	7 cut(s)	114, 147, 271, 813, 1001, 1066, 1090
AjnI	CCWGG	3 cut(s)	197, 978, 1147
AluBI	AGCT	4 cut(s)	188, 206, 365, 926
AluI	AGCT	4 cut(s)	188, 206, 365, 926
Alw21I	GWGCWC	2 cut(s)	461, 968
Alw26I	GTCTC	1 cut(s)	411
Alw44I	GTGCAC	2 cut(s)	457, 964
AlwI	GGATC	2 cut(s)	268, 824
AoxI	GGCC	1 cut(s)	195
ApaLI	GTGCAC	2 cut(s)	457, 964
ApeKI	GCWGC	4 cut(s)	188, 650, 779, 782
ApoI	RAATTY	3 cut(s)	67, 878, 1193
AseI	ATTAAT	1 cut(s)	507
Asp700I	GAANNNNTTC	1 cut(s)	1005
Asp718I	GGTACC	1 cut(s)	587
AspLEI	GCGC	2 cut(s)	267, 655
AsuC2I	CCSGG	2 cut(s)	414, 431
AsuHPI	GGTGA	4 cut(s)	184, 401, 883, 931
AxyI	CCTNAGG	1 cut(s)	500
BaeGI	GKGCMC	2 cut(s)	461, 968
BanI	GGYRCC	2 cut(s)	241, 587
Bbv12I	GWGCWC	2 cut(s)	461, 968
BbvI	GCAGC	4 cut(s)	175, 662, 766, 769
BccI	CCATC	5 cut(s)	530, 554, 1007, 1080, 1174
BceAI	ACGGC	2 cut(s)	35, 300
BciT130I	CCWGG	3 cut(s)	199, 980, 1149
BclI	TGATCA	1 cut(s)	174
BcnI	CCSGG	2 cut(s)	414, 431
BcoDI	GTCTC	1 cut(s)	411
BfmI	CTRYAG	1 cut(s)	648
BfoI	RGCGCY	1 cut(s)	656
BfrI	CTTAAG	1 cut(s)	23
BfuAI	ACCTGC	1 cut(s)	537
BisI	GCNGC	5 cut(s)	189, 215, 651, 780, 783
BlsI	GCNGC	5 cut(s)	190, 216, 652, 781, 784
Bme1390I	CCNGG	5 cut(s)	199, 414, 431, 980, 1149
BmiI	GGNNCC	4 cut(s)	41, 243, 589, 628
BmrFI	CCNGG	5 cut(s)	199, 414, 431, 980, 1149
BmsI	GCATC	3 cut(s)	984, 1048, 1281
BpmI	CTGGAG	2 cut(s)	387, 462
BpuMI	CCSGG	2 cut(s)	414, 431
BsaAI	YACGTR	1 cut(s)	59
BsaI	GGTCTC	1 cut(s)	411
BsaJI	CCNNGG	3 cut(s)	198, 344, 555
BsaWI	WCCGGW	1 cut(s)	1266
BsaXI	ACNNNNNCTCC	4 cut(s)	360, 390, 408, 438
Bsc4I	CCNNNNNNNGG	3 cut(s)	283, 734, 850
Bse1I	ACTGG	2 cut(s)	445, 973
Bse21I	CCTNAGG	1 cut(s)	500
BseBI	CCWGG	3 cut(s)	199, 980, 1149
BseDI	CCNNGG	3 cut(s)	198, 344, 555
BseGI	GGATG	6 cut(s)	96, 331, 565, 975, 1072, 1275
BseLI	CCNNNNNNNGG	3 cut(s)	283, 734, 850
BseMII	CTCAG	2 cut(s)	918, 1212
BseNI	ACTGG	2 cut(s)	445, 973
BseSI	GKGCMC	2 cut(s)	461, 968
BseXI	GCAGC	4 cut(s)	175, 662, 766, 769
BseYI	CCCAGC	1 cut(s)	206
BshFI	GGCC	1 cut(s)	197
BshNI	GGYRCC	2 cut(s)	241, 587
BsiHKAI	GWGCWC	2 cut(s)	461, 968
BsiSI	CCGG	3 cut(s)	413, 431, 1267
BslFI	GGGAC	1 cut(s)	339
BslI	CCNNNNNNNGG	3 cut(s)	283, 734, 850
BsmAI	GTCTC	1 cut(s)	411
BsmFI	GGGAC	1 cut(s)	339
BsmI	GAATGC	2 cut(s)	452, 1061
BsnI	GGCC	1 cut(s)	197
Bso31I	GGTCTC	1 cut(s)	411
Bsp1286I	GDGCHC	2 cut(s)	461, 968
Bsp1407I	TGTACA	1 cut(s)	692
BspACI	CCGC	8 cut(s)	28, 72, 191, 215, 684, 785, 1135, 1279
BspANI	GGCC	1 cut(s)	197
BspCNI	CTCAG	2 cut(s)	919, 1213
BspHI	TCATGA	2 cut(s)	358, 1009
BspLI	GGNNCC	4 cut(s)	41, 243, 589, 628
BspMAI	CTGCAG	1 cut(s)	652
BspMI	ACCTGC	1 cut(s)	537
BspPI	GGATC	2 cut(s)	268, 824
BspT107I	GGYRCC	2 cut(s)	241, 587
BspTI	CTTAAG	1 cut(s)	23
BspTNI	GGTCTC	1 cut(s)	411
BsrGI	TGTACA	1 cut(s)	692
BsrI	ACTGG	2 cut(s)	445, 973
BssECI	CCNNGG	3 cut(s)	198, 344, 555
BssNAI	GTATAC	1 cut(s)	307
BssT1I	CCWWGG	1 cut(s)	555
Bst1107I	GTATAC	1 cut(s)	307
Bst2UI	CCWGG	3 cut(s)	199, 980, 1149
Bst4CI	ACNGT	6 cut(s)	52, 83, 107, 339, 613, 712
BstAFI	CTTAAG	1 cut(s)	23
BstAPI	GCANNNNNTGC	1 cut(s)	456
BstAUI	TGTACA	1 cut(s)	692
BstBAI	YACGTR	1 cut(s)	59
BstC8I	GCNNGC	2 cut(s)	166, 1251
BstDEI	CTNAG	4 cut(s)	500, 677, 927, 1221
BstF5I	GGATG	6 cut(s)	96, 331, 565, 975, 1072, 1275
BstH2I	RGCGCY	1 cut(s)	656
BstHHI	GCGC	2 cut(s)	267, 655
BstMAI	GTCTC	1 cut(s)	411
BstMWI	GCNNNNNNNGC	6 cut(s)	194, 203, 456, 791, 972, 1278
BstNI	CCWGG	3 cut(s)	199, 980, 1149
BstNSI	RCATGY	3 cut(s)	490, 623, 1249
BstSCI	CCNGG	5 cut(s)	197, 412, 429, 978, 1147
BstSFI	CTRYAG	1 cut(s)	648
BstSLI	GKGCMC	2 cut(s)	461, 968
BstV1I	GCAGC	4 cut(s)	175, 662, 766, 769
BstX2I	RGATCY	1 cut(s)	273
BstYI	RGATCY	1 cut(s)	273
BstZ17I	GTATAC	1 cut(s)	307
Bsu36I	CCTNAGG	1 cut(s)	500
BsuRI	GGCC	1 cut(s)	197
BtsCI	GGATG	6 cut(s)	96, 331, 565, 975, 1072, 1275
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	8 cut(s)	159, 297, 335, 438, 607, 609, 966, 1137
BveI	ACCTGC	1 cut(s)	537
Cac8I	GCNNGC	2 cut(s)	166, 1251
CciI	TCATGA	2 cut(s)	358, 1009
CfoI	GCGC	2 cut(s)	267, 655
CsiI	ACCWGGT	1 cut(s)	1147
Csp6I	GTAC	9 cut(s)	13, 60, 522, 588, 693, 1031, 1110, 1165, 1243
CviQI	GTAC	9 cut(s)	13, 60, 522, 588, 693, 1031, 1110, 1165, 1243
DdeI	CTNAG	4 cut(s)	500, 677, 927, 1221
Eco130I	CCWWGG	1 cut(s)	555
Eco31I	GGTCTC	1 cut(s)	411
Eco57I	CTGAAG	1 cut(s)	1124
Eco81I	CCTNAGG	1 cut(s)	500
EcoRII	CCWGG	3 cut(s)	197, 978, 1147
EcoT14I	CCWWGG	1 cut(s)	555
EcoT22I	ATGCAT	1 cut(s)	1063
ErhI	CCWWGG	1 cut(s)	555
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FaqI	GGGAC	1 cut(s)	339
FauI	CCCGC	1 cut(s)	1142
FbaI	TGATCA	1 cut(s)	174
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	5 cut(s)	189, 215, 651, 780, 783
FokI	GGATG	6 cut(s)	83, 318, 572, 962, 1059, 1262
Fsp4HI	GCNGC	5 cut(s)	189, 215, 651, 780, 783
GlaI	GCGC	2 cut(s)	266, 654
GluI	GCNGC	5 cut(s)	189, 215, 651, 780, 783
GsaI	CCCAGC	1 cut(s)	210
GsuI	CTGGAG	2 cut(s)	387, 462
HaeII	RGCGCY	1 cut(s)	656
HaeIII	GGCC	1 cut(s)	197
HapII	CCGG	3 cut(s)	413, 431, 1267
HhaI	GCGC	2 cut(s)	267, 655
Hin6I	GCGC	2 cut(s)	265, 653
HinP1I	GCGC	2 cut(s)	265, 653
HinfI	GANTC	4 cut(s)	372, 886, 1099, 1263
HpaII	CCGG	3 cut(s)	413, 431, 1267
HphI	GGTGA	4 cut(s)	184, 401, 883, 931
Hpy166II	GTNNAC	4 cut(s)	307, 438, 459, 966
Hpy188I	TCNGA	7 cut(s)	348, 475, 758, 834, 1077, 1104, 1222
Hpy188III	TCNNGA	5 cut(s)	359, 659, 914, 1010, 1087
Hpy8I	GTNNAC	4 cut(s)	307, 438, 459, 966
HpyAV	CCTTC	2 cut(s)	782, 1099
HpyCH4III	ACNGT	6 cut(s)	52, 83, 107, 339, 613, 712
HpyCH4IV	ACGT	1 cut(s)	58
HpyF10VI	GCNNNNNNNGC	6 cut(s)	194, 203, 456, 791, 972, 1278
HpyF3I	CTNAG	4 cut(s)	500, 677, 927, 1221
HpySE526I	ACGT	1 cut(s)	58
HspAI	GCGC	2 cut(s)	265, 653
KpnI	GGTACC	1 cut(s)	591
Ksp22I	TGATCA	1 cut(s)	174
LmnI	GCTCC	2 cut(s)	45, 1285
Lsp1109I	GCAGC	4 cut(s)	175, 662, 766, 769
LweI	GCATC	3 cut(s)	984, 1048, 1281
MabI	ACCWGGT	1 cut(s)	1147
MaeII	ACGT	1 cut(s)	58
MaeIII	GTNAC	3 cut(s)	52, 397, 1121
MboII	GAAGA	2 cut(s)	283, 649
MflI	RGATCY	1 cut(s)	273
MhlI	GDGCHC	2 cut(s)	461, 968
MluCI	AATT	5 cut(s)	67, 570, 878, 1184, 1193
MlyI	GAGTC	1 cut(s)	1093
MmeI	TCCRAC	3 cut(s)	180, 864, 1018
Mph1103I	ATGCAT	1 cut(s)	1063
MroXI	GAANNNNTTC	1 cut(s)	1005
MseI	TTAA	2 cut(s)	24, 507
MslI	CAYNNNNRTG	2 cut(s)	300, 1280
MspA1I	CMGCKG	1 cut(s)	217
MspCI	CTTAAG	1 cut(s)	23
MspI	CCGG	3 cut(s)	413, 431, 1267
MspR9I	CCNGG	5 cut(s)	199, 414, 431, 980, 1149
Mva1269I	GAATGC	2 cut(s)	452, 1061
MvaI	CCWGG	3 cut(s)	199, 980, 1149
MwoI	GCNNNNNNNGC	6 cut(s)	194, 203, 456, 791, 972, 1278
NciI	CCSGG	2 cut(s)	414, 431
NlaIV	GGNNCC	4 cut(s)	41, 243, 589, 628
NmuCI	GTSAC	1 cut(s)	52
NsiI	ATGCAT	1 cut(s)	1063
NspI	RCATGY	3 cut(s)	490, 623, 1249
PagI	TCATGA	2 cut(s)	358, 1009
PciI	ACATGT	2 cut(s)	486, 619
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PctI	GAATGC	2 cut(s)	452, 1061
PdmI	GAANNNNTTC	1 cut(s)	1005
PfeI	GAWTC	3 cut(s)	372, 886, 1263
PflFI	GACNNNGTC	1 cut(s)	422
PkrI	GCNGC	5 cut(s)	190, 216, 652, 781, 784
PleI	GAGTC	1 cut(s)	1093
PpsI	GAGTC	1 cut(s)	1093
Ppu21I	YACGTR	1 cut(s)	59
PscI	ACATGT	2 cut(s)	486, 619
PshBI	ATTAAT	1 cut(s)	507
Psp6I	CCWGG	3 cut(s)	197, 978, 1147
PspFI	CCCAGC	1 cut(s)	206
PspGI	CCWGG	3 cut(s)	197, 978, 1147
PspN4I	GGNNCC	4 cut(s)	41, 243, 589, 628
PstI	CTGCAG	1 cut(s)	652
PsuI	RGATCY	1 cut(s)	273
PsyI	GACNNNGTC	1 cut(s)	422
RsaI	GTAC	9 cut(s)	14, 61, 523, 589, 694, 1032, 1111, 1166, 1244
RsaNI	GTAC	9 cut(s)	13, 60, 522, 588, 693, 1031, 1110, 1165, 1243
RseI	CAYNNNNRTG	2 cut(s)	300, 1280
SaqAI	TTAA	2 cut(s)	24, 507
SatI	GCNGC	5 cut(s)	189, 215, 651, 780, 783
SchI	GAGTC	1 cut(s)	1093
ScrFI	CCNGG	5 cut(s)	199, 414, 431, 980, 1149
SduI	GDGCHC	2 cut(s)	461, 968
SexAI	ACCWGGT	1 cut(s)	1147
SfaNI	GCATC	3 cut(s)	984, 1048, 1281
SfcI	CTRYAG	1 cut(s)	648
SmiMI	CAYNNNNRTG	2 cut(s)	300, 1280
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	5 cut(s)	67, 570, 878, 1184, 1193
SsiI	CCGC	8 cut(s)	28, 72, 191, 215, 684, 785, 1135, 1279
StyD4I	CCNGG	5 cut(s)	197, 412, 429, 978, 1147
StyI	CCWWGG	1 cut(s)	555
TaaI	ACNGT	6 cut(s)	52, 83, 107, 339, 613, 712
TaiI	ACGT	1 cut(s)	61
TasI	AATT	5 cut(s)	67, 570, 878, 1184, 1193
TatI	WGTACW	4 cut(s)	692, 1030, 1164, 1242
TauI	GCSGC	1 cut(s)	217
TfiI	GAWTC	3 cut(s)	372, 886, 1263
Tru1I	TTAA	2 cut(s)	24, 507
Tru9I	TTAA	2 cut(s)	24, 507
TscAI	CASTG	8 cut(s)	166, 304, 342, 445, 607, 616, 973, 1144
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	4 cut(s)	188, 650, 779, 782
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	6 cut(s)	273, 375, 729, 891, 998, 1184
TspGWI	ACGGA	1 cut(s)	619
TspRI	CASTG	8 cut(s)	166, 304, 342, 445, 607, 616, 973, 1144
Tth111I	GACNNNGTC	1 cut(s)	422
Vha464I	CTTAAG	1 cut(s)	23
VneI	GTGCAC	2 cut(s)	457, 964
VspI	ATTAAT	1 cut(s)	507
XapI	RAATTY	3 cut(s)	67, 878, 1193
XceI	RCATGY	3 cut(s)	490, 623, 1249
XcmI	CCANNNNNNNNNTGG	1 cut(s)	757
XmiI	GTMKAC	1 cut(s)	306
XmnI	GAANNNNTTC	1 cut(s)	1005
Zsp2I	ATGCAT	1 cut(s)	1063

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.