Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0005240

Physical Location & Seq

Genomic Coordinates Forward (+)

57131480 .. 57135969

Gene Structure 4490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG338900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGCAACCAGTTCAGTAAATGAAAAAGAGGGGGTTCATGACGGCTTGGTCAATGTGCCCTATGAATGGAAAGATTTTGATTTTTCTCAGACTGATGATCTGTCTCTGTTGGAGGGTGAAAGTTCTATTGTTCAGCTGGATCCTCCTTTTCCAGAACATGCAACAGAAACTGTCCTTTCCAAGGAAGACAAGTCTTTCTGTAATATGGCTGATATGAAGGAGTCCACCACGAATAGCATATGCAATATTGATGTTCTTGAAGAGAGCATTGAAGATGCTAAACATAACAAGAGAACATTGTTTTCAGCCATGGAGTCTGTTATCACCATGATGAGAGAAGTGGAACTGGAAGAGAAAGCTGTGGATCGTGTCACAGAGGAAGCCGCAAGGGGAGGTCAGGATATTATGGTTAAGGTGGAGGAACTAAAACTGATGTTGGCACATGCGAAGGATGCAAATGACATGCATGCTGGTGAAGTTTATGGGGAGAAGGCAATTTTAGCAACTGAAGTTAGAGAGCTTCAATGTCGATTGCTCAGTTTGTCAGATGAAAGGGATAAGTCACTTGCAATCCTTGACGAGATGCGTGAAACACTTGAAGCACGACTAACTGGAGTTGCAGAGTTGAGAAAAATGGCCGAGGATGAAAAGCTAGAAAAGGAAGAATCTGCACGGAAAGCTCTTGCTGAACAAGAAGCCATCATGGAGAAAGTGGTTGAGGAGTCGAAGACACTGCAACAGGCAGCGGAGGAAAATTCCAAGTTGCGGGAGTTTCTGATGGACCGTGGCCACATTGTAGATATGCTACAAGGAGAAATCTCTGTAATTTGTCAGGATGTCAAGTTGCTGAAAGAGAAGTTTGATGATCGTGTTCCTCTAAGCCAGTCTGTTTCATCTAGCCAGACAAGTTGCATCTTAGCTTCTTCAGGCTCATCCTTGAAAAGCGCGGCATCTGACTTGCTTCTAGAACGAGTTGGGTCAGTTGGGTCATCTGAGTCACCAAAGACCATAGAGAGGGCAAGTCCTGTTGCTTCAGTTGACGGTCTCTCACCAAAATACAGACTAGAAGATAAAACAGTCAAGGTCGATAAACAAGCTCTTATGGCCGATGGGTGGGATGTCTTTGACGAAGATCTCTTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

381

Amino Acids

42.39

Weight (kDa)

4.56

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03290 AT1G03290 AT1G03290 AT1G03290 AT1G03290 AT1G03290 AT4G02880 AT4G02880
fragaria_vesca	FvH4_2g23870 FvH4_2g23870 FvH4_2g23870 FvH4_2g23870
malus_domestica	MD03G1268400.v1.1 MD11G1289200.v1.1
prunus_persica	Prupe.8G244100_v2.0.a1 Prupe.8G244100_v2.0.a1
pyrus_communis	pycom03g21430 pycom11g25660
rosa_chinensis	RchiOBHm_Chr6g0291481
rosa_laevigata	RLG00000012112
rosa_multiflora	Rmu_sc0003296.1_g000006
rosa_roxburghii	Rroxscaffold_7G00176020
rosa_rugosa	Rorug06G0219800 Rorug06G0219900
rosa_samantha	Rh6AG332000 Rh6BG338900 Rh6CG345100 Rh6DG332300
rosa_wichuraiana	Rw6G028840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	47
AccII	CGCG	1 cut(s)	947
AciI	CCGC	4 cut(s)	384, 746, 766, 947
AclWI	GGATC	3 cut(s)	134, 147, 372
AcoI	YGGCCR	3 cut(s)	636, 787, 1104
AcsI	RAATTY	1 cut(s)	754
AcuI	CTGAAG	3 cut(s)	528, 909, 1017
AfiI	CCNNNNNNNGG	5 cut(s)	66, 181, 765, 1014, 1113
AgsI	TTSAA	5 cut(s)	260, 272, 524, 599, 940
AluBI	AGCT	7 cut(s)	136, 359, 520, 652, 680, 920, 1097
AluI	AGCT	7 cut(s)	136, 359, 520, 652, 680, 920, 1097
Alw26I	GTCTC	2 cut(s)	108, 1049
AlwI	GGATC	3 cut(s)	134, 147, 372
AlwNI	CAGNNNCTG	1 cut(s)	170
AoxI	GGCC	3 cut(s)	636, 787, 1104
ApeKI	GCWGC	1 cut(s)	743
ApoI	RAATTY	1 cut(s)	754
AspLEI	GCGC	1 cut(s)	947
AspS9I	GGNCC	1 cut(s)	781
AsuHPI	GGTGA	5 cut(s)	128, 316, 485, 990, 1041
AvaII	GGWCC	1 cut(s)	781
BaeGI	GKGCMC	1 cut(s)	60
BalI	TGGCCA	1 cut(s)	789
BamHI	GGATCC	1 cut(s)	139
BbsI	GAAGAC	2 cut(s)	192, 734
BbvI	GCAGC	1 cut(s)	755
BccI	CCATC	3 cut(s)	707, 772, 1103
BceAI	ACGGC	1 cut(s)	58
BcgI	CGANNNNNNTGC	2 cut(s)	715, 749
BcoDI	GTCTC	2 cut(s)	108, 1049
BfaI	CTAG	4 cut(s)	653, 897, 965, 1064
BglII	AGATCT	1 cut(s)	1132
BisI	GCNGC	3 cut(s)	384, 744, 948
BlsI	GCNGC	3 cut(s)	385, 745, 949
Bme18I	GGWCC	1 cut(s)	781
BmgT120I	GGNCC	1 cut(s)	781
BmiI	GGNNCC	1 cut(s)	141
BmsI	GCATC	5 cut(s)	265, 442, 573, 921, 959
BpiI	GAAGAC	2 cut(s)	192, 734
BpmI	CTGGAG	1 cut(s)	633
BsaI	GGTCTC	1 cut(s)	1049
BsaJI	CCNNGG	4 cut(s)	180, 309, 639, 784
Bsc4I	CCNNNNNNNGG	5 cut(s)	66, 181, 765, 1014, 1113
Bse1I	ACTGG	4 cut(s)	9, 351, 616, 883
BseDI	CCNNGG	4 cut(s)	180, 309, 639, 784
BseGI	GGATG	5 cut(s)	457, 649, 841, 932, 1123
BseLI	CCNNNNNNNGG	5 cut(s)	66, 181, 765, 1014, 1113
BseMII	CTCAG	3 cut(s)	101, 550, 984
BseNI	ACTGG	4 cut(s)	9, 351, 616, 883
BseRI	GAGGAG	1 cut(s)	734
BseSI	GKGCMC	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	755
BsgI	GTGCAG	1 cut(s)	654
Bsh1236I	CGCG	1 cut(s)	947
BshFI	GGCC	3 cut(s)	638, 789, 1106
BslI	CCNNNNNNNGG	5 cut(s)	66, 181, 765, 1014, 1113
BsmAI	GTCTC	2 cut(s)	108, 1049
BsnI	GGCC	3 cut(s)	638, 789, 1106
Bso31I	GGTCTC	1 cut(s)	1049
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp143I	GATC	5 cut(s)	97, 139, 364, 865, 1132
Bsp19I	CCATGG	1 cut(s)	309
BspACI	CCGC	4 cut(s)	384, 746, 766, 947
BspANI	GGCC	3 cut(s)	638, 789, 1106
BspCNI	CTCAG	3 cut(s)	100, 549, 985
BspFNI	CGCG	1 cut(s)	947
BspHI	TCATGA	1 cut(s)	37
BspLI	GGNNCC	1 cut(s)	141
BspPI	GGATC	3 cut(s)	134, 147, 372
BspTNI	GGTCTC	1 cut(s)	1049
BsrI	ACTGG	4 cut(s)	9, 351, 616, 883
BssECI	CCNNGG	4 cut(s)	180, 309, 639, 784
BssMI	GATC	5 cut(s)	97, 139, 364, 865, 1132
BssT1I	CCWWGG	2 cut(s)	180, 309
Bst4CI	ACNGT	4 cut(s)	172, 785, 1043, 1078
Bst6I	CTCTTC	2 cut(s)	255, 345
BstC8I	GCNNGC	1 cut(s)	468
BstDEI	CTNAG	5 cut(s)	87, 536, 878, 916, 993
BstDSI	CCRYGG	2 cut(s)	309, 784
BstENI	CCTNNNNNAGG	1 cut(s)	179
BstF5I	GGATG	5 cut(s)	457, 649, 841, 932, 1123
BstFNI	CGCG	1 cut(s)	947
BstHHI	GCGC	1 cut(s)	947
BstKTI	GATC	5 cut(s)	100, 142, 367, 868, 1135
BstMAI	GTCTC	2 cut(s)	108, 1049
BstMBI	GATC	5 cut(s)	97, 139, 364, 865, 1132
BstMWI	GCNNNNNNNGC	4 cut(s)	452, 500, 677, 1103
BstNSI	RCATGY	4 cut(s)	161, 446, 466, 470
BstSLI	GKGCMC	1 cut(s)	60
BstUI	CGCG	1 cut(s)	947
BstV1I	GCAGC	1 cut(s)	755
BstV2I	GAAGAC	2 cut(s)	192, 734
BstX2I	RGATCY	2 cut(s)	139, 1132
BstYI	RGATCY	2 cut(s)	139, 1132
BsuRI	GGCC	3 cut(s)	638, 789, 1106
BtgI	CCRYGG	2 cut(s)	309, 784
BtsCI	GGATG	5 cut(s)	457, 649, 841, 932, 1123
BtsI	GCAGTG	1 cut(s)	731
BtsIMutI	CAGTG	1 cut(s)	731
Cac8I	GCNNGC	1 cut(s)	468
CaiI	CAGNNNCTG	1 cut(s)	170
CciI	TCATGA	1 cut(s)	37
CfoI	GCGC	1 cut(s)	947
Cfr13I	GGNCC	1 cut(s)	781
CviAII	CATG	8 cut(s)	38, 158, 310, 328, 443, 463, 467, 703
DdeI	CTNAG	5 cut(s)	87, 536, 878, 916, 993
DpnI	GATC	5 cut(s)	99, 141, 366, 867, 1134
DpnII	GATC	5 cut(s)	97, 139, 364, 865, 1132
DrdI	GACNNNNNNGTC	1 cut(s)	47
DseDI	GACNNNNNNGTC	1 cut(s)	47
EaeI	YGGCCR	3 cut(s)	636, 787, 1104
Eam1104I	CTCTTC	2 cut(s)	255, 345
EarI	CTCTTC	2 cut(s)	255, 345
Eco130I	CCWWGG	2 cut(s)	180, 309
Eco31I	GGTCTC	1 cut(s)	1049
Eco47I	GGWCC	1 cut(s)	781
Eco57I	CTGAAG	3 cut(s)	528, 909, 1017
EcoNI	CCTNNNNNAGG	1 cut(s)	179
EcoT14I	CCWWGG	2 cut(s)	180, 309
EcoT22I	ATGCAT	1 cut(s)	468
ErhI	CCWWGG	2 cut(s)	180, 309
FaeI	CATG	8 cut(s)	41, 161, 313, 331, 446, 466, 470, 706
FatI	CATG	8 cut(s)	37, 157, 309, 327, 442, 462, 466, 702
FauI	CCCGC	1 cut(s)	759
FauNDI	CATATG	1 cut(s)	239
Fnu4HI	GCNGC	3 cut(s)	384, 744, 948
FokI	GGATG	5 cut(s)	464, 656, 848, 919, 1130
Fsp4HI	GCNGC	3 cut(s)	384, 744, 948
FspBI	CTAG	4 cut(s)	653, 897, 965, 1064
GlaI	GCGC	1 cut(s)	946
GluI	GCNGC	3 cut(s)	384, 744, 948
GsuI	CTGGAG	1 cut(s)	633
HaeIII	GGCC	3 cut(s)	638, 789, 1106
HhaI	GCGC	1 cut(s)	947
Hin1II	CATG	8 cut(s)	41, 161, 313, 331, 446, 466, 470, 706
Hin6I	GCGC	1 cut(s)	945
HinP1I	GCGC	1 cut(s)	945
HincII	GTYRAC	1 cut(s)	1039
HindII	GTYRAC	1 cut(s)	1039
HinfI	GANTC	5 cut(s)	221, 314, 665, 722, 995
HphI	GGTGA	5 cut(s)	128, 316, 485, 990, 1041
Hpy166II	GTNNAC	2 cut(s)	225, 1039
Hpy188I	TCNGA	5 cut(s)	90, 547, 777, 955, 994
Hpy188III	TCNNGA	6 cut(s)	38, 152, 257, 398, 833, 965
Hpy8I	GTNNAC	2 cut(s)	225, 1039
HpyAV	CCTTC	3 cut(s)	211, 442, 484
HpyCH4III	ACNGT	4 cut(s)	172, 785, 1043, 1078
HpyCH4V	TGCA	9 cut(s)	161, 243, 455, 466, 569, 620, 671, 736, 912
HpyF10VI	GCNNNNNNNGC	4 cut(s)	452, 500, 677, 1103
HpyF3I	CTNAG	5 cut(s)	87, 536, 878, 916, 993
Hsp92II	CATG	8 cut(s)	41, 161, 313, 331, 446, 466, 470, 706
HspAI	GCGC	1 cut(s)	945
Kzo9I	GATC	5 cut(s)	97, 139, 364, 865, 1132
Lsp1109I	GCAGC	1 cut(s)	755
LweI	GCATC	5 cut(s)	265, 442, 573, 921, 959
MaeI	CTAG	4 cut(s)	653, 897, 965, 1064
MaeIII	GTNAC	3 cut(s)	370, 561, 996
MalI	GATC	5 cut(s)	99, 141, 366, 867, 1134
MboI	GATC	5 cut(s)	97, 139, 364, 865, 1132
MboII	GAAGA	9 cut(s)	197, 272, 284, 362, 674, 739, 915, 1079, 1142
MflI	RGATCY	2 cut(s)	139, 1132
MhlI	GDGCHC	1 cut(s)	60
MlsI	TGGCCA	1 cut(s)	789
MluCI	AATT	3 cut(s)	495, 754, 825
MluNI	TGGCCA	1 cut(s)	789
MlyI	GAGTC	4 cut(s)	230, 323, 731, 1004
MmeI	TCCRAC	1 cut(s)	90
Mox20I	TGGCCA	1 cut(s)	789
Mph1103I	ATGCAT	1 cut(s)	468
MscI	TGGCCA	1 cut(s)	789
MseI	TTAA	1 cut(s)	411
MslI	CAYNNNNRTG	2 cut(s)	329, 471
Msp20I	TGGCCA	1 cut(s)	789
MspA1I	CMGCKG	2 cut(s)	136, 746
MvnI	CGCG	1 cut(s)	947
MwoI	GCNNNNNNNGC	4 cut(s)	452, 500, 677, 1103
NcoI	CCATGG	1 cut(s)	309
NdeI	CATATG	1 cut(s)	239
NdeII	GATC	5 cut(s)	97, 139, 364, 865, 1132
NlaIII	CATG	8 cut(s)	41, 161, 313, 331, 446, 466, 470, 706
NlaIV	GGNNCC	1 cut(s)	141
NmeAIII	GCCGAG	1 cut(s)	664
NmuCI	GTSAC	3 cut(s)	370, 561, 996
NsiI	ATGCAT	1 cut(s)	468
NspI	RCATGY	4 cut(s)	161, 446, 466, 470
PaeI	GCATGC	1 cut(s)	470
PagI	TCATGA	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	665
PkrI	GCNGC	3 cut(s)	385, 745, 949
PleI	GAGTC	4 cut(s)	229, 322, 730, 1003
PpsI	GAGTC	4 cut(s)	229, 322, 730, 1003
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	1 cut(s)	781
PstNI	CAGNNNCTG	1 cut(s)	170
PsuI	RGATCY	2 cut(s)	139, 1132
PvuII	CAGCTG	1 cut(s)	136
RseI	CAYNNNNRTG	2 cut(s)	329, 471
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	3 cut(s)	384, 744, 948
Sau3AI	GATC	5 cut(s)	97, 139, 364, 865, 1132
Sau96I	GGNCC	1 cut(s)	781
SchI	GAGTC	4 cut(s)	230, 323, 731, 1004
SduI	GDGCHC	1 cut(s)	60
SfaNI	GCATC	5 cut(s)	265, 442, 573, 921, 959
SinI	GGWCC	1 cut(s)	781
SmiMI	CAYNNNNRTG	2 cut(s)	329, 471
SphI	GCATGC	1 cut(s)	470
Sse9I	AATT	3 cut(s)	495, 754, 825
SsiI	CCGC	4 cut(s)	384, 746, 766, 947
SspI	AATATT	1 cut(s)	247
SspMI	CTAG	4 cut(s)	653, 897, 965, 1064
StyI	CCWWGG	2 cut(s)	180, 309
TaaI	ACNGT	4 cut(s)	172, 785, 1043, 1078
TaqI	TCGA	3 cut(s)	529, 725, 1086
TasI	AATT	3 cut(s)	495, 754, 825
TauI	GCSGC	2 cut(s)	386, 950
TfiI	GAWTC	1 cut(s)	665
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	1 cut(s)	738
TseFI	GTSAC	3 cut(s)	370, 561, 996
TseI	GCWGC	1 cut(s)	743
Tsp45I	GTSAC	3 cut(s)	370, 561, 996
TspDTI	ATGAA	7 cut(s)	26, 36, 78, 230, 564, 660, 882
TspGWI	ACGGA	1 cut(s)	688
TspRI	CASTG	1 cut(s)	738
VpaK11BI	GGWCC	1 cut(s)	781
XagI	CCTNNNNNAGG	1 cut(s)	179
XapI	RAATTY	1 cut(s)	754
XbaI	TCTAGA	1 cut(s)	964
XceI	RCATGY	4 cut(s)	161, 446, 466, 470
XspI	CTAG	4 cut(s)	653, 897, 965, 1064
Zsp2I	ATGCAT	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.