Rh6CG345100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0005240
Physical Location & Seq
Forward (+)
53576325 .. 53581188
4864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG345100.1

Sequence Viewer

Length: 1236 bp
ATGGGGTTTAATGCGGTTTTTAGCTCCTTGAAGGAGGTTTTTCCTCAGGTTGATTTTCGTGTTCTGAAAGCTGTTGCTATAGAAAATTCTAATGATCTTGACGCAGCTGTCAATGATGTGCTGAATGAGGTTCTCCCTTTCTTGACCAAACATCCTGAGAGTCCTGCAATGGTTCAGACTCCTAGCAGCCAACCAACTGCAGTTGAACCTGAGGAGCAGAGTAAAGAATTAAATCACCAGGAGGTAGTTAAGGAAGTAGAGGTTGAGTCTTTTCCAGCAGCAAGATCCACTGATGCTGACAATGCCAACACTACTGATCAAACAGAATTTACAAGTGGTGCCTCCCATGAGGTTTGTACACTGGTAGATGATACAAATTCATCACAGAATCTCCTTGCCTCTTCAGATGGAGATCAAGCAACTGCACATGATGAACAAGAATTTGTGAACACTGGAAGTGAAGAACTGGAGCGACGTGGAAAGAAGATTAATGAGGATGATGACACTTTCATATTGCCGGAGGGGGTAGAAACATTTCTGAGTGATACTCAGCTTTATACTGAAACAACAGCAGTTGGTAATGTCGAAGCTGGGCTTCAGCAGTCTTTATCTGGAATGGCAACCAGTTCAGTACATGAAAAACAGGGGGTTCATGATGGCTTGGTCAATGTGCCCTATGAATGGAAAGATTTTGATTTTTCTCAGACTGATGATCTGTCTCTGTTGGAGGGTGAAAGTTCTATTGTTCAGCTGGATCCTCCTTTTCCAGAACATGCAACAGAAACTGTCCTTTCCAAGGAAGACGAGTCTTTCTGTAATATGGCTGATATGAAGGAGTCCACCATGAATAACATATGCAATATTGATGTTCTTGAAGAGAGCATTGAAGATGCTAAACATAACAAGAGAACATTGTTTTCAGCCATGGAGTCTGTTATCACCATGATGAGAGAAGTGGAACTGGAAGAGAAAGCTGTGGATCGTGTCACAGAGGAAGCCGCAAGGGGAGGTCAGGATATTATGGTTAAGGTGGAGGAACTAAAACTGATGTTGGCACATGCGAAGGATGCAAATGACATGCATGCTGGTGAAGTTTACGGGGAGAAGGCAATTTTAGCAACTGAAGTTAGAGAGCTTCAATGTCGACTGCTCAGTTTGTCAGATGAAAGGGATAAGTCACTTGCAATCCTTGACGAGGTTTTGACTCCTCTACATCCTGTTGCTTATTGTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CUE

Protein Analysis

411

Amino Acids

45.43

Weight (kDa)

4.27

Isoelectric Point (pI)

47.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CUE PF02845 5 - 42 3.6e-06 CUE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 107
AccB1I GGYRCC 1 cut(s) 338
AccI GTMKAC 1 cut(s) 1144
AciI CCGC 2 cut(s) 14, 999
AclWI GGATC 4 cut(s) 279, 749, 762, 987
AcsI RAATTY 4 cut(s) 85, 326, 376, 440
AcuI CTGAAG 3 cut(s) 387, 581, 1143
AfaI GTAC 2 cut(s) 358, 633
AfiI CCNNNNNNNGG 3 cut(s) 681, 796, 1195
AgsI TTSAA 5 cut(s) 31, 206, 875, 887, 1139
AjiI CACGTC 1 cut(s) 476
AjnI CCWGG 1 cut(s) 237
AluBI AGCT 8 cut(s) 24, 71, 107, 553, 590, 751, 974, 1135
AluI AGCT 8 cut(s) 24, 71, 107, 553, 590, 751, 974, 1135
Alw26I GTCTC 1 cut(s) 723
AlwI GGATC 4 cut(s) 279, 749, 762, 987
AlwNI CAGNNNCTG 1 cut(s) 785
ApeKI GCWGC 3 cut(s) 104, 186, 278
ApoI RAATTY 4 cut(s) 85, 326, 376, 440
AseI ATTAAT 1 cut(s) 489
Asp700I GAANNNNTTC 1 cut(s) 534
AsuHPI GGTGA 4 cut(s) 227, 743, 931, 1100
AxyI CCTNAGG 2 cut(s) 45, 210
BaeGI GKGCMC 1 cut(s) 675
BamHI GGATCC 1 cut(s) 754
BanI GGYRCC 1 cut(s) 338
BbsI GAAGAC 1 cut(s) 807
BbvI GCAGC 3 cut(s) 116, 198, 290
BccI CCATC 2 cut(s) 401, 650
BciT130I CCWGG 1 cut(s) 239
BclI TGATCA 1 cut(s) 316
BcoDI GTCTC 1 cut(s) 723
BfaI CTAG 1 cut(s) 183
BfmI CTRYAG 2 cut(s) 78, 198
BisI GCNGC 4 cut(s) 105, 187, 279, 999
BlsI GCNGC 4 cut(s) 106, 188, 280, 1000
Bme1390I CCNGG 1 cut(s) 239
BmgBI CACGTC 1 cut(s) 476
BmiI GGNNCC 2 cut(s) 340, 756
BmrFI CCNGG 1 cut(s) 239
BmsI GCATC 3 cut(s) 283, 880, 1057
BpiI GAAGAC 1 cut(s) 807
BplI GAGNNNNNCTC 2 cut(s) 532, 564
BpmI CTGGAG 1 cut(s) 488
BsaBI GATNNNNATC 1 cut(s) 411
BsaJI CCNNGG 2 cut(s) 795, 924
BsaXI ACNNNNNCTCC 2 cut(s) 375, 405
Bsc4I CCNNNNNNNGG 3 cut(s) 681, 796, 1195
Bse1I ACTGG 5 cut(s) 366, 457, 471, 624, 966
Bse21I CCTNAGG 2 cut(s) 45, 210
Bse3DI GCAATG 1 cut(s) 174
Bse8I GATNNNNATC 1 cut(s) 411
BseBI CCWGG 1 cut(s) 239
BseDI CCNNGG 2 cut(s) 795, 924
BseGI GGATG 4 cut(s) 151, 502, 1072, 1213
BseJI GATNNNNATC 1 cut(s) 411
BseLI CCNNNNNNNGG 3 cut(s) 681, 796, 1195
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 7 cut(s) 59, 147, 201, 530, 563, 716, 1165
BseNI ACTGG 5 cut(s) 366, 457, 471, 624, 966
BseRI GAGGAG 2 cut(s) 227, 1197
BseSI GKGCMC 1 cut(s) 675
BseXI GCAGC 3 cut(s) 116, 198, 290
BseYI CCCAGC 1 cut(s) 590
BsgI GTGCAG 1 cut(s) 408
BshNI GGYRCC 1 cut(s) 338
BsiSI CCGG 1 cut(s) 518
BslI CCNNNNNNNGG 3 cut(s) 681, 796, 1195
BsmAI GTCTC 1 cut(s) 723
Bsp1286I GDGCHC 1 cut(s) 675
Bsp1407I TGTACA 1 cut(s) 356
Bsp143I GATC 7 cut(s) 94, 284, 316, 412, 712, 754, 979
Bsp19I CCATGG 1 cut(s) 924
BspACI CCGC 2 cut(s) 14, 999
BspCNI CTCAG 7 cut(s) 58, 148, 202, 531, 562, 715, 1164
BspHI TCATGA 1 cut(s) 652
BspLI GGNNCC 2 cut(s) 340, 756
BspMAI CTGCAG 1 cut(s) 202
BspPI GGATC 4 cut(s) 279, 749, 762, 987
BspT107I GGYRCC 1 cut(s) 338
BsrDI GCAATG 1 cut(s) 174
BsrGI TGTACA 1 cut(s) 356
BsrI ACTGG 5 cut(s) 366, 457, 471, 624, 966
BssECI CCNNGG 2 cut(s) 795, 924
BssMI GATC 7 cut(s) 94, 284, 316, 412, 712, 754, 979
BssT1I CCWWGG 2 cut(s) 795, 924
Bst2UI CCWGG 1 cut(s) 239
Bst4CI ACNGT 1 cut(s) 787
Bst6I CTCTTC 3 cut(s) 406, 870, 960
BstAUI TGTACA 1 cut(s) 356
BstC8I GCNNGC 1 cut(s) 1083
BstDEI CTNAG 7 cut(s) 45, 156, 210, 539, 549, 702, 1151
BstDSI CCRYGG 1 cut(s) 924
BstENI CCTNNNNNAGG 2 cut(s) 794, 1193
BstF5I GGATG 4 cut(s) 151, 502, 1072, 1213
BstKTI GATC 7 cut(s) 97, 287, 319, 415, 715, 757, 982
BstMAI GTCTC 1 cut(s) 723
BstMBI GATC 7 cut(s) 94, 284, 316, 412, 712, 754, 979
BstMWI GCNNNNNNNGC 3 cut(s) 302, 1067, 1115
BstNI CCWGG 1 cut(s) 239
BstNSI RCATGY 4 cut(s) 776, 1061, 1081, 1085
BstSCI CCNGG 1 cut(s) 237
BstSFI CTRYAG 2 cut(s) 78, 198
BstSLI GKGCMC 1 cut(s) 675
BstV1I GCAGC 3 cut(s) 116, 198, 290
BstV2I GAAGAC 1 cut(s) 807
BstX2I RGATCY 2 cut(s) 284, 754
BstYI RGATCY 2 cut(s) 284, 754
Bsu36I CCTNAGG 2 cut(s) 45, 210
BtgI CCRYGG 1 cut(s) 924
BtrI CACGTC 1 cut(s) 476
BtsCI GGATG 4 cut(s) 151, 502, 1072, 1213
BtsIMutI CAGTG 3 cut(s) 288, 359, 450
Cac8I GCNNGC 1 cut(s) 1083
CaiI CAGNNNCTG 1 cut(s) 785
CciI TCATGA 1 cut(s) 652
CseI GACGC 1 cut(s) 110
Csp6I GTAC 2 cut(s) 357, 632
CviQI GTAC 2 cut(s) 357, 632
DdeI CTNAG 7 cut(s) 45, 156, 210, 539, 549, 702, 1151
DpnI GATC 7 cut(s) 96, 286, 318, 414, 714, 756, 981
DpnII GATC 7 cut(s) 94, 284, 316, 412, 712, 754, 979
DrdI GACNNNNNNGTC 1 cut(s) 107
DseDI GACNNNNNNGTC 1 cut(s) 107
Eam1104I CTCTTC 3 cut(s) 406, 870, 960
EarI CTCTTC 3 cut(s) 406, 870, 960
Eco130I CCWWGG 2 cut(s) 795, 924
Eco57I CTGAAG 3 cut(s) 387, 581, 1143
Eco81I CCTNAGG 2 cut(s) 45, 210
EcoNI CCTNNNNNAGG 2 cut(s) 794, 1193
EcoRII CCWGG 1 cut(s) 237
EcoT14I CCWWGG 2 cut(s) 795, 924
EcoT22I ATGCAT 1 cut(s) 1083
ErhI CCWWGG 2 cut(s) 795, 924
FalI AAGNNNNNCTT 2 cut(s) 579, 611
FauNDI CATATG 1 cut(s) 854
FbaI TGATCA 1 cut(s) 316
FblI GTMKAC 1 cut(s) 1144
Fnu4HI GCNGC 4 cut(s) 105, 187, 279, 999
FokI GGATG 4 cut(s) 138, 509, 1079, 1200
Fsp4HI GCNGC 4 cut(s) 105, 187, 279, 999
FspBI CTAG 1 cut(s) 183
GluI GCNGC 4 cut(s) 105, 187, 279, 999
GsaI CCCAGC 1 cut(s) 594
GsuI CTGGAG 1 cut(s) 488
HapII CCGG 1 cut(s) 518
HgaI GACGC 1 cut(s) 110
HincII GTYRAC 1 cut(s) 1145
HindII GTYRAC 1 cut(s) 1145
HinfI GANTC 8 cut(s) 160, 178, 266, 388, 806, 836, 929, 1204
HpaII CCGG 1 cut(s) 518
HphI GGTGA 4 cut(s) 227, 743, 931, 1100
Hpy166II GTNNAC 5 cut(s) 359, 448, 840, 1096, 1145
Hpy188I TCNGA 6 cut(s) 66, 177, 406, 540, 705, 1162
Hpy188III TCNNGA 8 cut(s) 98, 142, 155, 612, 653, 767, 872, 1013
Hpy8I GTNNAC 5 cut(s) 359, 448, 840, 1096, 1145
Hpy99I CGWCG 1 cut(s) 477
HpyAV CCTTC 4 cut(s) 25, 826, 1057, 1099
HpyCH4III ACNGT 1 cut(s) 787
HpyCH4IV ACGT 1 cut(s) 475
HpyCH4V TGCA 8 cut(s) 167, 200, 425, 776, 858, 1070, 1081, 1184
HpyF10VI GCNNNNNNNGC 3 cut(s) 302, 1067, 1115
HpyF3I CTNAG 7 cut(s) 45, 156, 210, 539, 549, 702, 1151
HpySE526I ACGT 1 cut(s) 475
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 7 cut(s) 94, 284, 316, 412, 712, 754, 979
LmnI GCTCC 3 cut(s) 29, 214, 469
Lsp1109I GCAGC 3 cut(s) 116, 198, 290
LweI GCATC 3 cut(s) 283, 880, 1057
MaeI CTAG 1 cut(s) 183
MaeII ACGT 1 cut(s) 475
MaeIII GTNAC 2 cut(s) 985, 1176
MalI GATC 7 cut(s) 96, 286, 318, 414, 714, 756, 981
MboI GATC 7 cut(s) 94, 284, 316, 412, 712, 754, 979
MboII GAAGA 7 cut(s) 393, 473, 496, 812, 887, 899, 977
MflI RGATCY 2 cut(s) 284, 754
MhlI GDGCHC 1 cut(s) 675
MluCI AATT 6 cut(s) 85, 227, 326, 376, 440, 1110
MlyI GAGTC 7 cut(s) 169, 172, 275, 815, 845, 938, 1198
MmeI TCCRAC 1 cut(s) 705
Mph1103I ATGCAT 1 cut(s) 1083
MroXI GAANNNNTTC 1 cut(s) 534
MseI TTAA 6 cut(s) 9, 230, 249, 489, 1026, 1234
MslI CAYNNNNRTG 2 cut(s) 944, 1086
MspA1I CMGCKG 2 cut(s) 107, 751
MspI CCGG 1 cut(s) 518
MspR9I CCNGG 1 cut(s) 239
MvaI CCWGG 1 cut(s) 239
MwoI GCNNNNNNNGC 3 cut(s) 302, 1067, 1115
NcoI CCATGG 1 cut(s) 924
NdeI CATATG 1 cut(s) 854
NdeII GATC 7 cut(s) 94, 284, 316, 412, 712, 754, 979
NlaIV GGNNCC 2 cut(s) 340, 756
NmuCI GTSAC 2 cut(s) 985, 1176
NsiI ATGCAT 1 cut(s) 1083
NspI RCATGY 4 cut(s) 776, 1061, 1081, 1085
PaeI GCATGC 1 cut(s) 1085
PagI TCATGA 1 cut(s) 652
PdmI GAANNNNTTC 1 cut(s) 534
PfeI GAWTC 1 cut(s) 388
PkrI GCNGC 4 cut(s) 106, 188, 280, 1000
PleI GAGTC 7 cut(s) 168, 172, 274, 814, 844, 937, 1198
PpsI GAGTC 7 cut(s) 168, 172, 274, 814, 844, 937, 1198
PshBI ATTAAT 1 cut(s) 489
Psp6I CCWGG 1 cut(s) 237
PspFI CCCAGC 1 cut(s) 590
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 2 cut(s) 340, 756
PstI CTGCAG 1 cut(s) 202
PstNI CAGNNNCTG 1 cut(s) 785
PsuI RGATCY 2 cut(s) 284, 754
PvuII CAGCTG 2 cut(s) 107, 751
RsaI GTAC 2 cut(s) 358, 633
RsaNI GTAC 2 cut(s) 357, 632
RseI CAYNNNNRTG 2 cut(s) 944, 1086
SalI GTCGAC 1 cut(s) 1143
SaqAI TTAA 6 cut(s) 9, 230, 249, 489, 1026, 1234
SatI GCNGC 4 cut(s) 105, 187, 279, 999
Sau3AI GATC 7 cut(s) 94, 284, 316, 412, 712, 754, 979
SchI GAGTC 7 cut(s) 169, 172, 275, 815, 845, 938, 1198
ScrFI CCNGG 1 cut(s) 239
SduI GDGCHC 1 cut(s) 675
SfaNI GCATC 3 cut(s) 283, 880, 1057
SfcI CTRYAG 2 cut(s) 78, 198
SmiMI CAYNNNNRTG 2 cut(s) 944, 1086
SphI GCATGC 1 cut(s) 1085
Sse9I AATT 6 cut(s) 85, 227, 326, 376, 440, 1110
SsiI CCGC 2 cut(s) 14, 999
SspI AATATT 1 cut(s) 862
SspMI CTAG 1 cut(s) 183
StyD4I CCNGG 1 cut(s) 237
StyI CCWWGG 2 cut(s) 795, 924
TaaI ACNGT 1 cut(s) 787
TaiI ACGT 1 cut(s) 478
TaqI TCGA 2 cut(s) 585, 1144
TasI AATT 6 cut(s) 85, 227, 326, 376, 440, 1110
TatI WGTACW 2 cut(s) 356, 631
TauI GCSGC 1 cut(s) 1001
TfiI GAWTC 1 cut(s) 388
Tru1I TTAA 6 cut(s) 9, 230, 249, 489, 1026, 1234
Tru9I TTAA 6 cut(s) 9, 230, 249, 489, 1026, 1234
TscAI CASTG 3 cut(s) 295, 366, 457
TseFI GTSAC 2 cut(s) 985, 1176
TseI GCWGC 3 cut(s) 104, 186, 278
Tsp45I GTSAC 2 cut(s) 985, 1176
TspDTI ATGAA 9 cut(s) 369, 447, 499, 641, 651, 693, 845, 860, 1179
TspRI CASTG 3 cut(s) 295, 366, 457
VspI ATTAAT 1 cut(s) 489
XagI CCTNNNNNAGG 2 cut(s) 794, 1193
XapI RAATTY 4 cut(s) 85, 326, 376, 440
XceI RCATGY 4 cut(s) 776, 1061, 1081, 1085
XmiI GTMKAC 1 cut(s) 1144
XmnI GAANNNNTTC 1 cut(s) 534
XspI CTAG 1 cut(s) 183
Zsp2I ATGCAT 1 cut(s) 1083
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.