Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005240

Physical Location & Seq

Genomic Coordinates Reverse (-)

15506254 .. 15509846

Gene Structure 3593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00176020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1632 bp

ATGGAATTTACACTGATTCTTTTTTCTAAGATCATAAGATTCTATGTTGATTTTCGTGTTCTGAAAGCTGTTGCTATAGAAAATTCTAATGATCTTGACGCAGCTGTCAATGATGTGCTGAATGAGGTTCTCCCTTTCTTGACCAAACATCCTGAGAGTCCTGCAAAGGTTCAGACTCCTAGCAGCCAACCAACTGCAGTTGAACCTGAGGAGCAGAGTAAAGAATTAAATCACCAGCAGGTAGTTAAGGAAGTAGAGGTTGAGTCTTTTCCAGCAGCAAGATCCACTGATGTTGACCATGCCAACACTACTGATCAAACAGAATTTACAAGTGGTGCCTCCCATGAGGTTTGTACACTGGTAGATGACACAAATTTATCACAGAATCTCCTTGCCTCTTCAGATGCAGATCAAGCAACTGGGCATGATGAACAAGAATTTGTGAACACTGGAAGTGAGGAACTGGAGCGACGTGGAAAGAAGATTAATGAGGATGATGACACTTTCATATTGCCAGAGGGGGTAGAAACGTTTCTGAGTGATACTCAGCTTTATACTGACACAACAGCAGCTGGTAATGTCGAAGCTGGGCTTCAGCAGTCTTCATCTGGAATGGCAACCAGTTCAACTGATGATCTGTCTCTGTTGGAGGGTGAAAGTTCTATTGTTCAGCTGGATCCTCCTTTTCCAGAACATGCAACAGAAACTGTCCTTTCCAAGGAAGACGAGTCTTTCTGTAATATGGCTGATATGAAGGAGTCCACCACGAATAGCATATGCAATATTGATGTTCTTGAAGAGAGCATTGAAGATGCTAAACATAACAAGAACATTGTTTTCAGCCATGGAGTCTGTTATCACCATGATGAGAGAAGTGGAACTAGAAGAGAAAGCTGTGGATCTTGTCACAGAGGAAGCCGCAAGGGGAGGTCAGATATTATGGTCAAGGTGGAGGAACTAAAACTGATGTTGGCACATGCGAAGGATGCAAATGACATGCATGCTGGTGAAGTTTATGGGGAGAAGGCAATTTTAGCAACTGAAGTTAGAGAGCTTCAATGTCGATTGCTCAGTTTGTCAGATGAAAGGGATAAGTCACTTGCAATCCTTGACGAGATGCGTGAAACACTTGAAGCACGACTAACTGGAGTTGCAGAGTTGAGAAAAATGGCCGAGGATGAAAAGCTAGAAAAGGAAGAATCTGCACGGAAAGCTCTTGCTGAACAAGAAGCCATCATGGAGAAAGTGGTTGAGAGTCCAAGATACTGCAACAGGCAGCGGAGGAAAATTCCAAGAGGAGAAATCTCTGTAATTTGTCAGGATGTCAAGTTGCTGAAAGAGAAGTTTGATGATCGTGTTCCTCTAAGCCAGTCTGTTTCATCTAGCCAGACAAGTTGCATCTTAGCTTCTTCAGGCTCATCCTTGAAAAGCGCGGCATCTGACTTGCTTCTAGAACGAGTTGGGTCAGGTGGGTCATCCGAGTCACCAAAGACCATAGAGAGGGCAAGTCCTGTTGCTTCAGTTGACGGTCTGTCACCAAAATACAGACTAGAAGATAAAACAGTCAAGGTCGATAAACAAGCTCTTATGGCCGATGGGTGGGATGTCTTTGACGAAGATCTCTTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

543

Amino Acids

59.97

Weight (kDa)

4.66

Isoelectric Point (pI)

52.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03290 AT1G03290 AT1G03290 AT1G03290 AT1G03290 AT1G03290 AT4G02880 AT4G02880
fragaria_vesca	FvH4_2g23870 FvH4_2g23870 FvH4_2g23870 FvH4_2g23870
malus_domestica	MD03G1268400.v1.1 MD11G1289200.v1.1
prunus_persica	Prupe.8G244100_v2.0.a1 Prupe.8G244100_v2.0.a1
pyrus_communis	pycom03g21430 pycom11g25660
rosa_chinensis	RchiOBHm_Chr6g0291481
rosa_laevigata	RLG00000012112
rosa_multiflora	Rmu_sc0003296.1_g000006
rosa_roxburghii	Rroxscaffold_7G00176020
rosa_rugosa	Rorug06G0219800 Rorug06G0219900
rosa_samantha	Rh6AG332000 Rh6BG338900 Rh6CG345100 Rh6DG332300
rosa_wichuraiana	Rw6G028840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	104
Acc36I	ACCTGC	1 cut(s)	229
AccB1I	GGYRCC	1 cut(s)	335
AccII	CGCG	1 cut(s)	1433
AciI	CCGC	3 cut(s)	919, 1279, 1433
AclI	AACGTT	1 cut(s)	530
AclWI	GGATC	4 cut(s)	276, 671, 684, 907
AcoI	YGGCCR	2 cut(s)	1170, 1590
AcsI	RAATTY	6 cut(s)	5, 82, 323, 373, 437, 1287
AcuI	CTGAAG	5 cut(s)	384, 578, 1062, 1395, 1503
AfaI	GTAC	1 cut(s)	355
AfiI	CCNNNNNNNGG	3 cut(s)	718, 1500, 1599
AgsI	TTSAA	7 cut(s)	203, 627, 797, 809, 1058, 1133, 1426
AhdI	GACNNNNNGTC	1 cut(s)	1531
AjiI	CACGTC	1 cut(s)	473
Alw26I	GTCTC	1 cut(s)	645
AlwI	GGATC	4 cut(s)	276, 671, 684, 907
AlwNI	CAGNNNCTG	2 cut(s)	572, 707
AoxI	GGCC	2 cut(s)	1170, 1590
ApeKI	GCWGC	5 cut(s)	101, 183, 275, 569, 1276
ApoI	RAATTY	6 cut(s)	5, 82, 323, 373, 437, 1287
AseI	ATTAAT	1 cut(s)	486
Asp700I	GAANNNNTTC	1 cut(s)	531
AspLEI	GCGC	1 cut(s)	1433
AsuHPI	GGTGA	6 cut(s)	224, 665, 851, 1019, 1476, 1527
AxyI	CCTNAGG	1 cut(s)	207
BamHI	GGATCC	1 cut(s)	676
BanI	GGYRCC	1 cut(s)	335
BbsI	GAAGAC	2 cut(s)	594, 729
BbvI	GCAGC	5 cut(s)	113, 195, 287, 581, 1288
BccI	CCATC	2 cut(s)	1241, 1589
BclI	TGATCA	1 cut(s)	313
BcoDI	GTCTC	1 cut(s)	645
BfaI	CTAG	6 cut(s)	180, 882, 1187, 1383, 1451, 1550
BfmI	CTRYAG	2 cut(s)	75, 195
BfuAI	ACCTGC	1 cut(s)	229
BglII	AGATCT	1 cut(s)	1618
BisI	GCNGC	7 cut(s)	102, 184, 276, 570, 919, 1277, 1434
BlsI	GCNGC	7 cut(s)	103, 185, 277, 571, 920, 1278, 1435
BmeRI	GACNNNNNGTC	1 cut(s)	1531
BmgBI	CACGTC	1 cut(s)	473
BmiI	GGNNCC	2 cut(s)	337, 678
BmrI	ACTGGG	1 cut(s)	429
BmsI	GCATC	6 cut(s)	394, 802, 976, 1107, 1407, 1445
BmuI	ACTGGG	1 cut(s)	429
BpiI	GAAGAC	2 cut(s)	594, 729
BplI	GAGNNNNNCTC	2 cut(s)	529, 561
BpmI	CTGGAG	2 cut(s)	485, 1167
BsaBI	GATNNNNATC	1 cut(s)	408
BsaJI	CCNNGG	3 cut(s)	717, 844, 1173
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bsc4I	CCNNNNNNNGG	3 cut(s)	718, 1500, 1599
Bse1I	ACTGG	7 cut(s)	363, 424, 454, 468, 621, 1150, 1369
Bse21I	CCTNAGG	1 cut(s)	207
Bse8I	GATNNNNATC	1 cut(s)	408
BseDI	CCNNGG	3 cut(s)	717, 844, 1173
BseGI	GGATG	8 cut(s)	148, 499, 991, 1183, 1327, 1418, 1475, 1609
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	3 cut(s)	718, 1500, 1599
BseMII	CTCAG	5 cut(s)	144, 198, 527, 560, 1084
BseNI	ACTGG	7 cut(s)	363, 424, 454, 468, 621, 1150, 1369
BseRI	GAGGAG	2 cut(s)	224, 1311
BseXI	GCAGC	5 cut(s)	113, 195, 287, 581, 1288
BseYI	CCCAGC	1 cut(s)	587
BsgI	GTGCAG	1 cut(s)	1188
Bsh1236I	CGCG	1 cut(s)	1433
BshFI	GGCC	2 cut(s)	1172, 1592
BshNI	GGYRCC	1 cut(s)	335
BslI	CCNNNNNNNGG	3 cut(s)	718, 1500, 1599
BsmAI	GTCTC	1 cut(s)	645
BsnI	GGCC	2 cut(s)	1172, 1592
Bsp1407I	TGTACA	1 cut(s)	353
Bsp19I	CCATGG	1 cut(s)	844
BspACI	CCGC	3 cut(s)	919, 1279, 1433
BspANI	GGCC	2 cut(s)	1172, 1592
BspCNI	CTCAG	5 cut(s)	145, 199, 528, 559, 1083
BspFNI	CGCG	1 cut(s)	1433
BspLI	GGNNCC	2 cut(s)	337, 678
BspMAI	CTGCAG	1 cut(s)	199
BspMI	ACCTGC	1 cut(s)	229
BspPI	GGATC	4 cut(s)	276, 671, 684, 907
BspT107I	GGYRCC	1 cut(s)	335
BsrGI	TGTACA	1 cut(s)	353
BsrI	ACTGG	7 cut(s)	363, 424, 454, 468, 621, 1150, 1369
BssECI	CCNNGG	3 cut(s)	717, 844, 1173
BssT1I	CCWWGG	2 cut(s)	717, 844
Bst4CI	ACNGT	3 cut(s)	709, 1529, 1564
Bst6I	CTCTTC	3 cut(s)	403, 792, 880
BstAUI	TGTACA	1 cut(s)	353
BstC8I	GCNNGC	1 cut(s)	1002
BstDEI	CTNAG	8 cut(s)	27, 153, 207, 536, 546, 1070, 1364, 1402
BstDSI	CCRYGG	1 cut(s)	844
BstENI	CCTNNNNNAGG	1 cut(s)	716
BstF5I	GGATG	8 cut(s)	148, 499, 991, 1183, 1327, 1418, 1475, 1609
BstFNI	CGCG	1 cut(s)	1433
BstHHI	GCGC	1 cut(s)	1433
BstMAI	GTCTC	1 cut(s)	645
BstMWI	GCNNNNNNNGC	5 cut(s)	413, 986, 1034, 1211, 1589
BstNSI	RCATGY	4 cut(s)	698, 980, 1000, 1004
BstSFI	CTRYAG	2 cut(s)	75, 195
BstUI	CGCG	1 cut(s)	1433
BstV1I	GCAGC	5 cut(s)	113, 195, 287, 581, 1288
BstV2I	GAAGAC	2 cut(s)	594, 729
BstX2I	RGATCY	4 cut(s)	281, 676, 899, 1618
BstYI	RGATCY	4 cut(s)	281, 676, 899, 1618
Bsu36I	CCTNAGG	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	1172, 1592
BtgI	CCRYGG	1 cut(s)	844
BtrI	CACGTC	1 cut(s)	473
BtsCI	GGATG	8 cut(s)	148, 499, 991, 1183, 1327, 1418, 1475, 1609
BtsIMutI	CAGTG	4 cut(s)	11, 285, 356, 447
BveI	ACCTGC	1 cut(s)	229
Cac8I	GCNNGC	1 cut(s)	1002
CaiI	CAGNNNCTG	2 cut(s)	572, 707
CfoI	GCGC	1 cut(s)	1433
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	1 cut(s)	354
CspCI	CAANNNNNGTGG	2 cut(s)	274, 309
CviQI	GTAC	1 cut(s)	354
DdeI	CTNAG	8 cut(s)	27, 153, 207, 536, 546, 1070, 1364, 1402
DrdI	GACNNNNNNGTC	1 cut(s)	104
DriI	GACNNNNNGTC	1 cut(s)	1531
DseDI	GACNNNNNNGTC	1 cut(s)	104
EaeI	YGGCCR	2 cut(s)	1170, 1590
Eam1104I	CTCTTC	3 cut(s)	403, 792, 880
Eam1105I	GACNNNNNGTC	1 cut(s)	1531
EarI	CTCTTC	3 cut(s)	403, 792, 880
Eco130I	CCWWGG	2 cut(s)	717, 844
Eco57I	CTGAAG	5 cut(s)	384, 578, 1062, 1395, 1503
Eco81I	CCTNAGG	1 cut(s)	207
EcoNI	CCTNNNNNAGG	1 cut(s)	716
EcoT14I	CCWWGG	2 cut(s)	717, 844
EcoT22I	ATGCAT	1 cut(s)	1002
ErhI	CCWWGG	2 cut(s)	717, 844
FalI	AAGNNNNNCTT	2 cut(s)	576, 608
FauNDI	CATATG	1 cut(s)	776
FbaI	TGATCA	1 cut(s)	313
Fnu4HI	GCNGC	7 cut(s)	102, 184, 276, 570, 919, 1277, 1434
FokI	GGATG	8 cut(s)	135, 506, 998, 1190, 1334, 1405, 1462, 1616
Fsp4HI	GCNGC	7 cut(s)	102, 184, 276, 570, 919, 1277, 1434
FspBI	CTAG	6 cut(s)	180, 882, 1187, 1383, 1451, 1550
GlaI	GCGC	1 cut(s)	1432
GluI	GCNGC	7 cut(s)	102, 184, 276, 570, 919, 1277, 1434
GsaI	CCCAGC	1 cut(s)	591
GsuI	CTGGAG	2 cut(s)	485, 1167
HaeIII	GGCC	2 cut(s)	1172, 1592
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	1 cut(s)	1433
Hin6I	GCGC	1 cut(s)	1431
HinP1I	GCGC	1 cut(s)	1431
HincII	GTYRAC	2 cut(s)	295, 1525
HindII	GTYRAC	2 cut(s)	295, 1525
HphI	GGTGA	6 cut(s)	224, 665, 851, 1019, 1476, 1527
Hpy166II	GTNNAC	5 cut(s)	295, 356, 445, 762, 1525
Hpy188I	TCNGA	8 cut(s)	63, 174, 403, 537, 934, 1081, 1441, 1480
Hpy188III	TCNNGA	8 cut(s)	95, 139, 152, 609, 689, 794, 1319, 1451
Hpy8I	GTNNAC	5 cut(s)	295, 356, 445, 762, 1525
Hpy99I	CGWCG	1 cut(s)	474
HpyAV	CCTTC	3 cut(s)	748, 976, 1018
HpyCH4III	ACNGT	3 cut(s)	709, 1529, 1564
HpyCH4IV	ACGT	2 cut(s)	472, 530
HpyF10VI	GCNNNNNNNGC	5 cut(s)	413, 986, 1034, 1211, 1589
HpyF3I	CTNAG	8 cut(s)	27, 153, 207, 536, 546, 1070, 1364, 1402
HpySE526I	ACGT	2 cut(s)	472, 530
HspAI	GCGC	1 cut(s)	1431
Ksp22I	TGATCA	1 cut(s)	313
LmnI	GCTCC	2 cut(s)	211, 466
Lsp1109I	GCAGC	5 cut(s)	113, 195, 287, 581, 1288
LweI	GCATC	6 cut(s)	394, 802, 976, 1107, 1407, 1445
MaeI	CTAG	6 cut(s)	180, 882, 1187, 1383, 1451, 1550
MaeII	ACGT	2 cut(s)	472, 530
MaeIII	GTNAC	4 cut(s)	905, 1095, 1482, 1533
MflI	RGATCY	4 cut(s)	281, 676, 899, 1618
MluCI	AATT	9 cut(s)	5, 82, 224, 323, 373, 437, 1029, 1287, 1311
MlyI	GAGTC	8 cut(s)	166, 169, 272, 737, 767, 858, 1264, 1490
MmeI	TCCRAC	1 cut(s)	627
Mph1103I	ATGCAT	1 cut(s)	1002
MroXI	GAANNNNTTC	1 cut(s)	531
MseI	TTAA	3 cut(s)	227, 246, 486
MslI	CAYNNNNRTG	2 cut(s)	864, 1005
MspA1I	CMGCKG	4 cut(s)	104, 572, 673, 1279
MvnI	CGCG	1 cut(s)	1433
MwoI	GCNNNNNNNGC	5 cut(s)	413, 986, 1034, 1211, 1589
NcoI	CCATGG	1 cut(s)	844
NdeI	CATATG	1 cut(s)	776
NlaIV	GGNNCC	2 cut(s)	337, 678
NmeAIII	GCCGAG	1 cut(s)	1198
NmuCI	GTSAC	4 cut(s)	905, 1095, 1482, 1533
NsiI	ATGCAT	1 cut(s)	1002
NspI	RCATGY	4 cut(s)	698, 980, 1000, 1004
PaeI	GCATGC	1 cut(s)	1004
PdmI	GAANNNNTTC	1 cut(s)	531
PfeI	GAWTC	4 cut(s)	16, 39, 385, 1199
PkrI	GCNGC	7 cut(s)	103, 185, 277, 571, 920, 1278, 1435
PleI	GAGTC	8 cut(s)	165, 169, 271, 736, 766, 857, 1263, 1489
PpsI	GAGTC	8 cut(s)	165, 169, 271, 736, 766, 857, 1263, 1489
PshBI	ATTAAT	1 cut(s)	486
Psp1406I	AACGTT	1 cut(s)	530
PspFI	CCCAGC	1 cut(s)	587
PspN4I	GGNNCC	2 cut(s)	337, 678
PstI	CTGCAG	1 cut(s)	199
PstNI	CAGNNNCTG	2 cut(s)	572, 707
PsuI	RGATCY	4 cut(s)	281, 676, 899, 1618
PvuII	CAGCTG	3 cut(s)	104, 572, 673
RsaI	GTAC	1 cut(s)	355
RsaNI	GTAC	1 cut(s)	354
RseI	CAYNNNNRTG	2 cut(s)	864, 1005
SaqAI	TTAA	3 cut(s)	227, 246, 486
SatI	GCNGC	7 cut(s)	102, 184, 276, 570, 919, 1277, 1434
SchI	GAGTC	8 cut(s)	166, 169, 272, 737, 767, 858, 1264, 1490
SfaNI	GCATC	6 cut(s)	394, 802, 976, 1107, 1407, 1445
SfcI	CTRYAG	2 cut(s)	75, 195
SmiMI	CAYNNNNRTG	2 cut(s)	864, 1005
SphI	GCATGC	1 cut(s)	1004
Sse9I	AATT	9 cut(s)	5, 82, 224, 323, 373, 437, 1029, 1287, 1311
SsiI	CCGC	3 cut(s)	919, 1279, 1433
SspI	AATATT	1 cut(s)	784
SspMI	CTAG	6 cut(s)	180, 882, 1187, 1383, 1451, 1550
StyI	CCWWGG	2 cut(s)	717, 844
TaaI	ACNGT	3 cut(s)	709, 1529, 1564
TaiI	ACGT	2 cut(s)	475, 533
TaqI	TCGA	3 cut(s)	582, 1063, 1572
TasI	AATT	9 cut(s)	5, 82, 224, 323, 373, 437, 1029, 1287, 1311
TatI	WGTACW	1 cut(s)	353
TauI	GCSGC	2 cut(s)	921, 1436
TfiI	GAWTC	4 cut(s)	16, 39, 385, 1199
Tru1I	TTAA	3 cut(s)	227, 246, 486
Tru9I	TTAA	3 cut(s)	227, 246, 486
TscAI	CASTG	4 cut(s)	18, 292, 363, 454
TseFI	GTSAC	4 cut(s)	905, 1095, 1482, 1533
TseI	GCWGC	5 cut(s)	101, 183, 275, 569, 1276
Tsp45I	GTSAC	4 cut(s)	905, 1095, 1482, 1533
TspDTI	ATGAA	7 cut(s)	444, 496, 594, 767, 1098, 1194, 1368
TspGWI	ACGGA	1 cut(s)	1222
TspRI	CASTG	4 cut(s)	18, 292, 363, 454
VspI	ATTAAT	1 cut(s)	486
XagI	CCTNNNNNAGG	1 cut(s)	716
XapI	RAATTY	6 cut(s)	5, 82, 323, 373, 437, 1287
XbaI	TCTAGA	1 cut(s)	1450
XceI	RCATGY	4 cut(s)	698, 980, 1000, 1004
XmnI	GAANNNNTTC	1 cut(s)	531
XspI	CTAG	6 cut(s)	180, 882, 1187, 1383, 1451, 1550
Zsp2I	ATGCAT	1 cut(s)	1002

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.