FvH4_2g23870

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
19499057 .. 19503501
4445 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g23870.t3

Sequence Viewer

Length: 1785 bp
ATGGGAGTGAATGCTGTTTTTAGCTCCTTGAAGGAGATTTTTCCCCAGGTTGATTTTCGTCTTTTGAGAGGTGTTGCTTTGGAACATGCCAATGACCTTGACGCAGCTGTCGAGGATGTGCTGAATGAGGTTCTTCCTTTCTTGACCAACCGTCCTGGAAGTCCCGCTAAGATTCAAAGTCCTACTGGCGAACCCACTGAAGTTAAACCTTTGAGTAGAGAATTGATTCACCAACAGGTAGAGAAGGAAGTAGAGGTTGAGCCTTCTCCGGCAGTAGGATACACCGATTTTGAAGATGCCAACAATAATGATCATACAGAATTTACAAGTGCTTCCTTCCATGAGGTTTCTACCGTGGTAGATGACACAAGTTCATCTCAGAATCTTCCAGCAGCAAGATCCCCTGATGTAGATAATGCCAAAAATACCGATCATACAGAATTTACAAGTGCTGCCGTTCATGAGGTTTCTACACTGGTAGATGACACAAATCCATTGCAGAATGTCCTGGACTCCTCAGATGTAGATCAAGCAAGTGGGCACCAGGAACAAGAATGTGTGAACTCTGGAAGTAGAGAACTGGAAACCATTGGTAATGTTGATGTTGAGCTTCAGCAGTCGTCATCTGGAATGGTGATCAGTTCAGTACATGAACAAGAGGGGGTTCATGACTGTTCCATCAATGAGCCTTATGAATGGAAAGATTTCGATTTTTCTCAACATGATAGTCTAGCCGGCTCTCATTTTGAGGGTGAAAGTTCTATTGTTCGGCTGGATCCTCCTTTTCCAGAACATGTACCAGAAACCGTCCTTTCCAAGGAAGATGATTCTTTCTGTGATTTGGCTGATGATATGAAGGAGGCCACTACAAATAGCATATGCAATATTGATGTTCTTGAAGAGAGCATTGAAGATGCTAAACATAACAAGAAAACATTGTTTTCAGCCATGGAGTCTGTTATCACCATGATGAGAGAAGTGGAACTTGAAGAGAAAGCTGTTGATCGTGTCAGAGAGGAAGCAGCAAGGGGAGGTCAGGATATTATGGTGAAGGTGGAGGAACTAAAAGACATGTTGGCACATGCGAAGGATGCAAATGACATGCATGCTGGTGAAGTTTATGGGGAGAAGGCAATTCTAGCAACTGAAGTTAGAGAGCTTCAATGTCGATTGCTCAGTTTGTCAGATGAAAGGGATAAGTCACTTGCAATCCTTGACGAGATGCGTGAAACACTTGAAGTACGACTAGCTGGAGTAGCAGAGTTGAGAAAAATGGCCGAGGATGAAAAGTTAGAGAAGGAAGAATCTGCACGGAAAGCTCTTGCTGAACAAGAAGCCATCATGGAGAAAGTGGTCGAGGAGTCGAAGACACTGCAACAGGCAGCGGAGGAAAATTCCAAGTTGCGGGAGTTTCTGATGGACCGTGGTCACATTGTAGATATGCTACAAGGAGAAATCTCTGTTATCTGTCAGGATGTCAAGTTGCTGAAAGAGAAGTTTGATGAGCGTGTTCCTCTTAGCCAGTCGGTTTCATCTAGCCAGACAAGTTGCATCTTAGCTTCTTCAGGATCATCCTTGAAAAGCGTGGCGTCTGGCTTTCTTGTAGAACGAGTTGGGTCAGTTGGGTCATCTGAGTCACTAAAGACCCTAGAGAGGGTGAGTCCTGTTGCTTCAGTTGACGGTCTCTCACCAAAATTCAGACAAGAAAATGAAACAATCAAGGTGGATAAACAAGCTCTCATGGAAGATGGGTGGGATGTCTTTGACGAAGATCTCTTGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

595

Amino Acids

65.68

Weight (kDa)

4.44

Isoelectric Point (pI)

46.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 107
AccB1I GGYRCC 1 cut(s) 540
AciI CCGC 3 cut(s) 165, 1385, 1405
AclWI GGATC 4 cut(s) 393, 770, 783, 1576
AcoI YGGCCR 1 cut(s) 1275
AcsI RAATTY 4 cut(s) 320, 440, 1393, 1694
AcuI CTGAAG 5 cut(s) 219, 596, 1167, 1548, 1656
AcyI GRCGYC 1 cut(s) 1589
AfaI GTAC 3 cut(s) 648, 798, 1242
AfiI CCNNNNNNNGG 5 cut(s) 275, 817, 1404, 1653, 1654
AflIII ACRYGT 2 cut(s) 793, 1071
AgsI TTSAA 9 cut(s) 31, 176, 293, 899, 911, 989, 1163, 1238, 1579
AhdI GACNNNNNGTC 1 cut(s) 150
AjnI CCWGG 4 cut(s) 45, 154, 507, 543
AluBI AGCT 9 cut(s) 24, 107, 610, 998, 1159, 1250, 1319, 1559, 1736
AluI AGCT 9 cut(s) 24, 107, 610, 998, 1159, 1250, 1319, 1559, 1736
Alw26I GTCTC 1 cut(s) 1688
AlwI GGATC 4 cut(s) 393, 770, 783, 1576
AoxI GGCC 2 cut(s) 861, 1275
ApeKI GCWGC 5 cut(s) 104, 392, 452, 1022, 1382
ApoI RAATTY 4 cut(s) 320, 440, 1393, 1694
Asp700I GAANNNNTTC 2 cut(s) 225, 704
AspS9I GGNCC 1 cut(s) 1420
AsuHPI GGTGA 8 cut(s) 221, 646, 764, 955, 1060, 1124, 1669, 1680
AvaII GGWCC 1 cut(s) 1420
BaeGI GKGCMC 1 cut(s) 543
BamHI GGATCC 1 cut(s) 775
BanI GGYRCC 1 cut(s) 540
BbsI GAAGAC 1 cut(s) 1373
BbvI GCAGC 5 cut(s) 116, 404, 439, 1034, 1394
BccI CCATC 4 cut(s) 686, 1346, 1411, 1742
BceAI ACGGC 1 cut(s) 440
BcgI CGANNNNNNTGC 2 cut(s) 1354, 1388
BciT130I CCWGG 4 cut(s) 47, 156, 509, 545
BciVI GTATCC 1 cut(s) 272
BclI TGATCA 2 cut(s) 310, 636
BcoDI GTCTC 1 cut(s) 1688
BfaI CTAG 5 cut(s) 731, 1139, 1247, 1536, 1649
BfuI GTATCC 1 cut(s) 272
BglII AGATCT 1 cut(s) 1771
BisI GCNGC 5 cut(s) 105, 393, 453, 1023, 1383
BlsI GCNGC 5 cut(s) 106, 394, 454, 1024, 1384
Bme1390I CCNGG 4 cut(s) 47, 156, 509, 545
Bme18I GGWCC 1 cut(s) 1420
BmeRI GACNNNNNGTC 1 cut(s) 150
BmgT120I GGNCC 1 cut(s) 1420
BmiI GGNNCC 2 cut(s) 542, 777
BmrFI CCNGG 4 cut(s) 47, 156, 509, 545
BmsI GCATC 5 cut(s) 286, 904, 1081, 1212, 1560
BoxI GACNNNNGTC 1 cut(s) 1425
BpiI GAAGAC 1 cut(s) 1373
BpmI CTGGAG 1 cut(s) 1272
BsaBI GATNNNNATC 1 cut(s) 525
BsaHI GRCGYC 1 cut(s) 1589
BsaI GGTCTC 1 cut(s) 1688
BsaJI CCNNGG 6 cut(s) 45, 354, 816, 948, 1278, 1423
Bsc4I CCNNNNNNNGG 5 cut(s) 275, 817, 1404, 1653, 1654
Bse118I RCCGGY 1 cut(s) 734
Bse1I ACTGG 4 cut(s) 190, 480, 585, 1522
Bse3DI GCAATG 1 cut(s) 494
Bse8I GATNNNNATC 1 cut(s) 525
BseBI CCWGG 4 cut(s) 47, 156, 509, 545
BseDI CCNNGG 6 cut(s) 45, 354, 816, 948, 1278, 1423
BseGI GGATG 6 cut(s) 121, 1096, 1288, 1480, 1571, 1762
BseJI GATNNNNATC 1 cut(s) 525
BseLI CCNNNNNNNGG 5 cut(s) 275, 817, 1404, 1653, 1654
BseMI GCAATG 1 cut(s) 494
BseMII CTCAG 4 cut(s) 392, 531, 1189, 1623
BseNI ACTGG 4 cut(s) 190, 480, 585, 1522
BseRI GAGGAG 2 cut(s) 505, 1373
BseSI GKGCMC 1 cut(s) 543
BseXI GCAGC 5 cut(s) 116, 404, 439, 1034, 1394
BsgI GTGCAG 1 cut(s) 1293
BshFI GGCC 2 cut(s) 863, 1277
BshNI GGYRCC 1 cut(s) 540
BsiSI CCGG 2 cut(s) 269, 735
BslFI GGGAC 1 cut(s) 147
BslI CCNNNNNNNGG 5 cut(s) 275, 817, 1404, 1653, 1654
BsmAI GTCTC 1 cut(s) 1688
BsmFI GGGAC 1 cut(s) 147
BsmI GAATGC 1 cut(s) 16
BsnI GGCC 2 cut(s) 863, 1277
Bso31I GGTCTC 1 cut(s) 1688
Bsp1286I GDGCHC 1 cut(s) 543
Bsp143I GATC 9 cut(s) 310, 398, 430, 526, 636, 775, 1003, 1568, 1771
Bsp19I CCATGG 1 cut(s) 948
BspACI CCGC 3 cut(s) 165, 1385, 1405
BspANI GGCC 2 cut(s) 863, 1277
BspCNI CTCAG 4 cut(s) 391, 530, 1188, 1624
BspHI TCATGA 2 cut(s) 460, 667
BspLI GGNNCC 2 cut(s) 542, 777
BspPI GGATC 4 cut(s) 393, 770, 783, 1576
BspT107I GGYRCC 1 cut(s) 540
BspTNI GGTCTC 1 cut(s) 1688
BsrDI GCAATG 1 cut(s) 494
BsrFI RCCGGY 1 cut(s) 734
BsrI ACTGG 4 cut(s) 190, 480, 585, 1522
BssAI RCCGGY 1 cut(s) 734
BssECI CCNNGG 6 cut(s) 45, 354, 816, 948, 1278, 1423
BssMI GATC 9 cut(s) 310, 398, 430, 526, 636, 775, 1003, 1568, 1771
BssNI GRCGYC 1 cut(s) 1589
BssT1I CCWWGG 2 cut(s) 816, 948
Bst2UI CCWGG 4 cut(s) 47, 156, 509, 545
Bst4CI ACNGT 6 cut(s) 152, 355, 674, 808, 1424, 1682
Bst6I CTCTTC 2 cut(s) 894, 984
BstACI GRCGYC 1 cut(s) 1589
BstC8I GCNNGC 2 cut(s) 736, 1107
BstDEI CTNAG 7 cut(s) 168, 378, 517, 1175, 1517, 1555, 1632
BstDSI CCRYGG 3 cut(s) 354, 948, 1423
BstENI CCTNNNNNAGG 1 cut(s) 815
BstF5I GGATG 6 cut(s) 121, 1096, 1288, 1480, 1571, 1762
BstKTI GATC 9 cut(s) 313, 401, 433, 529, 639, 778, 1006, 1571, 1774
BstMAI GTCTC 1 cut(s) 1688
BstMBI GATC 9 cut(s) 310, 398, 430, 526, 636, 775, 1003, 1568, 1771
BstMWI GCNNNNNNNGC 4 cut(s) 1091, 1139, 1256, 1316
BstNI CCWGG 4 cut(s) 47, 156, 509, 545
BstNSI RCATGY 6 cut(s) 89, 797, 1075, 1085, 1105, 1109
BstPAI GACNNNNGTC 1 cut(s) 1425
BstSCI CCNGG 4 cut(s) 45, 154, 507, 543
BstSLI GKGCMC 1 cut(s) 543
BstV1I GCAGC 5 cut(s) 116, 404, 439, 1034, 1394
BstV2I GAAGAC 1 cut(s) 1373
BstX2I RGATCY 3 cut(s) 398, 775, 1771
BstYI RGATCY 3 cut(s) 398, 775, 1771
BsuI GTATCC 1 cut(s) 272
BsuRI GGCC 2 cut(s) 863, 1277
BtgI CCRYGG 3 cut(s) 354, 948, 1423
BtsCI GGATG 6 cut(s) 121, 1096, 1288, 1480, 1571, 1762
BtsI GCAGTG 1 cut(s) 1370
BtsIMutI CAGTG 3 cut(s) 195, 473, 1370
Cac8I GCNNGC 2 cut(s) 736, 1107
CciI TCATGA 2 cut(s) 460, 667
Cfr10I RCCGGY 1 cut(s) 734
Cfr13I GGNCC 1 cut(s) 1420
CseI GACGC 2 cut(s) 110, 1578
Csp6I GTAC 3 cut(s) 647, 797, 1241
CspCI CAANNNNNGTGG 2 cut(s) 1704, 1739
CviQI GTAC 3 cut(s) 647, 797, 1241
DdeI CTNAG 7 cut(s) 168, 378, 517, 1175, 1517, 1555, 1632
DpnI GATC 9 cut(s) 312, 400, 432, 528, 638, 777, 1005, 1570, 1773
DpnII GATC 9 cut(s) 310, 398, 430, 526, 636, 775, 1003, 1568, 1771
DrdI GACNNNNNNGTC 1 cut(s) 107
DriI GACNNNNNGTC 1 cut(s) 150
DseDI GACNNNNNNGTC 1 cut(s) 107
EaeI YGGCCR 1 cut(s) 1275
Eam1104I CTCTTC 2 cut(s) 894, 984
Eam1105I GACNNNNNGTC 1 cut(s) 150
EarI CTCTTC 2 cut(s) 894, 984
Eco130I CCWWGG 2 cut(s) 816, 948
Eco31I GGTCTC 1 cut(s) 1688
Eco47I GGWCC 1 cut(s) 1420
Eco57I CTGAAG 5 cut(s) 219, 596, 1167, 1548, 1656
EcoNI CCTNNNNNAGG 1 cut(s) 815
EcoRII CCWGG 4 cut(s) 45, 154, 507, 543
EcoT14I CCWWGG 2 cut(s) 816, 948
EcoT22I ATGCAT 1 cut(s) 1107
ErhI CCWWGG 2 cut(s) 816, 948
FalI AAGNNNNNCTT 2 cut(s) 969, 1001
FaqI GGGAC 1 cut(s) 147
FauI CCCGC 2 cut(s) 172, 1398
FauNDI CATATG 1 cut(s) 878
FbaI TGATCA 2 cut(s) 310, 636
Fnu4HI GCNGC 5 cut(s) 105, 393, 453, 1023, 1383
FokI GGATG 6 cut(s) 128, 1103, 1295, 1487, 1558, 1769
Fsp4HI GCNGC 5 cut(s) 105, 393, 453, 1023, 1383
FspBI CTAG 5 cut(s) 731, 1139, 1247, 1536, 1649
GluI GCNGC 5 cut(s) 105, 393, 453, 1023, 1383
GsuI CTGGAG 1 cut(s) 1272
HaeIII GGCC 2 cut(s) 863, 1277
HapII CCGG 2 cut(s) 269, 735
HgaI GACGC 2 cut(s) 110, 1578
Hin1I GRCGYC 1 cut(s) 1589
HincII GTYRAC 1 cut(s) 1678
HindII GTYRAC 1 cut(s) 1678
HpaII CCGG 2 cut(s) 269, 735
HphI GGTGA 8 cut(s) 221, 646, 764, 955, 1060, 1124, 1669, 1680
Hpy166II GTNNAC 2 cut(s) 562, 1678
Hpy188I TCNGA 7 cut(s) 381, 520, 1013, 1186, 1416, 1633, 1700
Hpy8I GTNNAC 2 cut(s) 562, 1678
HpyAV CCTTC 9 cut(s) 25, 238, 273, 346, 850, 1045, 1081, 1123, 1291
HpyCH4III ACNGT 6 cut(s) 152, 355, 674, 808, 1424, 1682
HpyCH4V TGCA 8 cut(s) 499, 882, 1094, 1105, 1208, 1310, 1375, 1551
HpyF10VI GCNNNNNNNGC 4 cut(s) 1091, 1139, 1256, 1316
HpyF3I CTNAG 7 cut(s) 168, 378, 517, 1175, 1517, 1555, 1632
Hsp92I GRCGYC 1 cut(s) 1589
KroI GCCGGC 1 cut(s) 734
KroNI GCCGGC 1 cut(s) 736
Ksp22I TGATCA 2 cut(s) 310, 636
Kzo9I GATC 9 cut(s) 310, 398, 430, 526, 636, 775, 1003, 1568, 1771
LmnI GCTCC 1 cut(s) 29
Lsp1109I GCAGC 5 cut(s) 116, 404, 439, 1034, 1394
LweI GCATC 5 cut(s) 286, 904, 1081, 1212, 1560
MaeI CTAG 5 cut(s) 731, 1139, 1247, 1536, 1649
MaeIII GTNAC 3 cut(s) 1200, 1427, 1635
MalI GATC 9 cut(s) 312, 400, 432, 528, 638, 777, 1005, 1570, 1773
MboI GATC 9 cut(s) 310, 398, 430, 526, 636, 775, 1003, 1568, 1771
MflI RGATCY 3 cut(s) 398, 775, 1771
MhlI GDGCHC 1 cut(s) 543
MluCI AATT 6 cut(s) 221, 320, 440, 1134, 1393, 1694
MlyI GAGTC 5 cut(s) 506, 962, 1370, 1643, 1669
Mph1103I ATGCAT 1 cut(s) 1107
MroNI GCCGGC 1 cut(s) 734
MroXI GAANNNNTTC 2 cut(s) 225, 704
MseI TTAA 1 cut(s) 204
MslI CAYNNNNRTG 3 cut(s) 90, 968, 1110
MspA1I CMGCKG 2 cut(s) 107, 1385
MspI CCGG 2 cut(s) 269, 735
MspR9I CCNGG 4 cut(s) 47, 156, 509, 545
Mva1269I GAATGC 1 cut(s) 16
MvaI CCWGG 4 cut(s) 47, 156, 509, 545
MwoI GCNNNNNNNGC 4 cut(s) 1091, 1139, 1256, 1316
NaeI GCCGGC 1 cut(s) 736
NcoI CCATGG 1 cut(s) 948
NdeI CATATG 1 cut(s) 878
NdeII GATC 9 cut(s) 310, 398, 430, 526, 636, 775, 1003, 1568, 1771
NgoMIV GCCGGC 1 cut(s) 734
NlaIV GGNNCC 2 cut(s) 542, 777
NmeAIII GCCGAG 1 cut(s) 1303
NmuCI GTSAC 3 cut(s) 1200, 1427, 1635
NsiI ATGCAT 1 cut(s) 1107
NspI RCATGY 6 cut(s) 89, 797, 1075, 1085, 1105, 1109
PaeI GCATGC 1 cut(s) 1109
PagI TCATGA 2 cut(s) 460, 667
PciI ACATGT 2 cut(s) 793, 1071
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PctI GAATGC 1 cut(s) 16
PdiI GCCGGC 1 cut(s) 736
PdmI GAANNNNTTC 2 cut(s) 225, 704
PfeI GAWTC 5 cut(s) 172, 226, 382, 827, 1304
PfoI TCCNGGA 2 cut(s) 154, 507
PkrI GCNGC 5 cut(s) 106, 394, 454, 1024, 1384
PleI GAGTC 5 cut(s) 506, 961, 1369, 1642, 1668
PpsI GAGTC 5 cut(s) 506, 961, 1369, 1642, 1668
PscI ACATGT 2 cut(s) 793, 1071
PshAI GACNNNNGTC 1 cut(s) 1425
Psp6I CCWGG 4 cut(s) 45, 154, 507, 543
PspGI CCWGG 4 cut(s) 45, 154, 507, 543
PspN4I GGNNCC 2 cut(s) 542, 777
PspPI GGNCC 1 cut(s) 1420
PsuI RGATCY 3 cut(s) 398, 775, 1771
PvuII CAGCTG 1 cut(s) 107
RsaI GTAC 3 cut(s) 648, 798, 1242
RsaNI GTAC 3 cut(s) 647, 797, 1241
RseI CAYNNNNRTG 3 cut(s) 90, 968, 1110
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 5 cut(s) 105, 393, 453, 1023, 1383
Sau3AI GATC 9 cut(s) 310, 398, 430, 526, 636, 775, 1003, 1568, 1771
Sau96I GGNCC 1 cut(s) 1420
SchI GAGTC 5 cut(s) 506, 962, 1370, 1643, 1669
ScrFI CCNGG 4 cut(s) 47, 156, 509, 545
SduI GDGCHC 1 cut(s) 543
SfaNI GCATC 5 cut(s) 286, 904, 1081, 1212, 1560
SinI GGWCC 1 cut(s) 1420
SmiMI CAYNNNNRTG 3 cut(s) 90, 968, 1110
SphI GCATGC 1 cut(s) 1109
Sse9I AATT 6 cut(s) 221, 320, 440, 1134, 1393, 1694
SsiI CCGC 3 cut(s) 165, 1385, 1405
SspI AATATT 1 cut(s) 886
SspMI CTAG 5 cut(s) 731, 1139, 1247, 1536, 1649
StyD4I CCNGG 4 cut(s) 45, 154, 507, 543
StyI CCWWGG 2 cut(s) 816, 948
TaaI ACNGT 6 cut(s) 152, 355, 674, 808, 1424, 1682
TaqI TCGA 5 cut(s) 111, 708, 1168, 1356, 1364
TasI AATT 6 cut(s) 221, 320, 440, 1134, 1393, 1694
TatI WGTACW 1 cut(s) 646
TfiI GAWTC 5 cut(s) 172, 226, 382, 827, 1304
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 3 cut(s) 202, 480, 1377
TseFI GTSAC 3 cut(s) 1200, 1427, 1635
TseI GCWGC 5 cut(s) 104, 392, 452, 1022, 1382
Tsp45I GTSAC 3 cut(s) 1200, 1427, 1635
TspGWI ACGGA 1 cut(s) 1327
TspRI CASTG 3 cut(s) 202, 480, 1377
VpaK11BI GGWCC 1 cut(s) 1420
XagI CCTNNNNNAGG 1 cut(s) 815
XapI RAATTY 4 cut(s) 320, 440, 1393, 1694
XceI RCATGY 6 cut(s) 89, 797, 1075, 1085, 1105, 1109
XmnI GAANNNNTTC 2 cut(s) 225, 704
XspI CTAG 5 cut(s) 731, 1139, 1247, 1536, 1649
Zsp2I ATGCAT 1 cut(s) 1107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.