AT4G03180

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012951
Physical Location & Seq
Forward (+)
1403117 .. 1404937
1821 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G03180.2

Sequence Viewer

Length: 558 bp
ATGAAGAAATTCTATCAAAATGCTGATCATGAGACTGATAAATCCAAATCGGCGGAGACGAAGAAGAGGAAGAACATGAGGAGATTAGGAGGCGGTGGTCTTTCTCTCCAAACTTTTGCCAACATGAAATCGGAAAATAATCGCTATAACCCTTCTTTGATCAAAAAGCAAAAAGAGTTCTACAAGAATGCAAAGTATGTGAGCAAGTTTAGGAAGTCGTTGAAGCAGCAGAACATTCCTGATAAGAATGAGACTGGAGAGACTAGTAAGGTAGGTGATGATGATGATGATGATAAGCGGAAGGGTAAATCTAATAAGAGAATTGGTGTAGAGGATTTGTACAAGCAGACAAGAGAAGAGATGGAGAGAGTAAGGAAGGAGAGAGAGGCAATGTTTCAGGCGAAGAAGGAAGCGAAAGAAGAGGCTGAATCTAGGAGGAAAGAAGCAAAGGGGAAAATGTTGAGGAAGACTCGACATGGTCAGCCTGTAATGAAATACAGAATTGAGCATCTTCTTGAATCCATCAAGAAATCTGCCGGAATCAACGAAATCGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
rRNA_processing

Protein Analysis

185

Amino Acids

21.69

Weight (kDa)

9.95

Isoelectric Point (pI)

46.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
rRNA_processing PF08524 10 - 132 2.8e-14 rRNA processing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012951)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03180 AT4G03180
fragaria_vesca FvH4_2g24850
malus_domestica MD03G1276600.v1.1 MD11G1299100.v1.1
prunus_persica Prupe.8G253400_v2.0.a1
pyrus_communis pycom03g22030 pycom11g26280
rosa_chinensis RchiOBHm_Chr6g0292701
rosa_laevigata RLG00000011998
rosa_multiflora Rmu_sc0000515.1_g000023
rosa_roxburghii Rroxscaffold_7G00174760
rosa_rugosa Rorug06G0229000
rosa_samantha Rh6AG342300 Rh6BG349600 Rh6CG356500 Rh6DG342600
rosa_wichuraiana Rw6G029840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 53, 93, 298
AcsI RAATTY 1 cut(s) 8
AfaI GTAC 1 cut(s) 341
AgsI TTSAA 2 cut(s) 223, 518
AhlI ACTAGT 1 cut(s) 263
Alw26I GTCTC 4 cut(s) 26, 50, 245, 254
ApeKI GCWGC 1 cut(s) 226
ApoI RAATTY 1 cut(s) 8
Asp700I GAANNNNTTC 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 287
BbsI GAAGAC 1 cut(s) 473
BbvI GCAGC 1 cut(s) 238
BccI CCATC 2 cut(s) 355, 530
BclI TGATCA 2 cut(s) 25, 159
BcoDI GTCTC 4 cut(s) 26, 50, 245, 254
BcuI ACTAGT 1 cut(s) 263
BfaI CTAG 2 cut(s) 264, 432
BisI GCNGC 1 cut(s) 227
BlsI GCNGC 1 cut(s) 228
BmsI GCATC 1 cut(s) 517
BpiI GAAGAC 1 cut(s) 473
BplI GAGNNNNNCTC 2 cut(s) 454, 486
BpmI CTGGAG 1 cut(s) 276
Bse1I ACTGG 1 cut(s) 259
Bse3DI GCAATG 1 cut(s) 396
BseMI GCAATG 1 cut(s) 396
BseNI ACTGG 1 cut(s) 259
BseRI GAGGAG 1 cut(s) 94
BseXI GCAGC 1 cut(s) 238
BsiSI CCGG 1 cut(s) 537
BsmAI GTCTC 4 cut(s) 26, 50, 245, 254
BsmBI CGTCTC 1 cut(s) 50
BsmI GAATGC 1 cut(s) 193
Bsp1407I TGTACA 1 cut(s) 339
Bsp143I GATC 2 cut(s) 25, 159
BspACI CCGC 3 cut(s) 53, 93, 298
BspHI TCATGA 1 cut(s) 28
BsrDI GCAATG 1 cut(s) 396
BsrGI TGTACA 1 cut(s) 339
BsrI ACTGG 1 cut(s) 259
BssMI GATC 2 cut(s) 25, 159
Bst6I CTCTTC 3 cut(s) 59, 351, 414
BstAUI TGTACA 1 cut(s) 339
BstKTI GATC 2 cut(s) 28, 162
BstMAI GTCTC 4 cut(s) 26, 50, 245, 254
BstMBI GATC 2 cut(s) 25, 159
BstV1I GCAGC 1 cut(s) 238
BstV2I GAAGAC 1 cut(s) 473
CciI TCATGA 1 cut(s) 28
Csp6I GTAC 1 cut(s) 340
CviAII CATG 4 cut(s) 29, 76, 124, 476
CviJI RGCY 2 cut(s) 425, 484
CviKI_1 RGCY 2 cut(s) 425, 484
CviQI GTAC 1 cut(s) 340
DpnI GATC 2 cut(s) 27, 161
DpnII GATC 2 cut(s) 25, 159
Eam1104I CTCTTC 3 cut(s) 59, 351, 414
EarI CTCTTC 3 cut(s) 59, 351, 414
EciI GGCGGA 1 cut(s) 68
Esp3I CGTCTC 1 cut(s) 50
FaeI CATG 4 cut(s) 32, 79, 127, 479
FaiI YATR 6 cut(s) 30, 77, 125, 147, 198, 477
FatI CATG 4 cut(s) 28, 75, 123, 475
FbaI TGATCA 2 cut(s) 25, 159
Fnu4HI GCNGC 1 cut(s) 227
Fsp4HI GCNGC 1 cut(s) 227
FspBI CTAG 2 cut(s) 264, 432
GluI GCNGC 1 cut(s) 227
GsuI CTGGAG 1 cut(s) 276
HapII CCGG 1 cut(s) 537
Hin1II CATG 4 cut(s) 32, 79, 127, 479
HinfI GANTC 4 cut(s) 428, 469, 518, 540
HpaII CCGG 1 cut(s) 537
HphI GGTGA 1 cut(s) 287
Hpy188I TCNGA 1 cut(s) 133
Hpy188III TCNNGA 4 cut(s) 29, 239, 515, 526
HpyAV CCTTC 4 cut(s) 162, 295, 370, 400
HpyCH4V TGCA 1 cut(s) 191
Hsp92II CATG 4 cut(s) 32, 79, 127, 479
Ksp22I TGATCA 2 cut(s) 25, 159
Kzo9I GATC 2 cut(s) 25, 159
LpnPI CCDG 5 cut(s) 240, 252, 383, 498, 550
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 1 cut(s) 517
MaeI CTAG 2 cut(s) 264, 432
MalI GATC 2 cut(s) 27, 161
MboI GATC 2 cut(s) 25, 159
MboII GAAGA 9 cut(s) 16, 73, 76, 82, 368, 415, 431, 478, 503
MluCI AATT 3 cut(s) 8, 321, 501
MlyI GAGTC 1 cut(s) 463
MnlI CCTC 8 cut(s) 60, 72, 83, 325, 379, 415, 429, 456
MroXI GAANNNNTTC 1 cut(s) 8
MspI CCGG 1 cut(s) 537
Mva1269I GAATGC 1 cut(s) 193
NdeII GATC 2 cut(s) 25, 159
NlaIII CATG 4 cut(s) 32, 79, 127, 479
PagI TCATGA 1 cut(s) 28
PcsI WCGNNNNNNNCGW 1 cut(s) 56
PctI GAATGC 1 cut(s) 193
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 3 cut(s) 428, 518, 540
PflFI GACNNNGTC 1 cut(s) 477
PkrI GCNGC 1 cut(s) 228
PleI GAGTC 1 cut(s) 463
PpsI GAGTC 1 cut(s) 463
PsyI GACNNNGTC 1 cut(s) 477
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
SatI GCNGC 1 cut(s) 227
Sau3AI GATC 2 cut(s) 25, 159
SchI GAGTC 1 cut(s) 463
SetI ASST 2 cut(s) 273, 277
SfaNI GCATC 1 cut(s) 517
SpeI ACTAGT 1 cut(s) 263
Sse9I AATT 3 cut(s) 8, 321, 501
SsiI CCGC 3 cut(s) 53, 93, 298
SspMI CTAG 2 cut(s) 264, 432
TaqI TCGA 1 cut(s) 472
TasI AATT 3 cut(s) 8, 321, 501
TatI WGTACW 1 cut(s) 339
TfiI GAWTC 3 cut(s) 428, 518, 540
TseI GCWGC 1 cut(s) 226
TspDTI ATGAA 3 cut(s) 17, 140, 506
Tth111I GACNNNGTC 1 cut(s) 477
XapI RAATTY 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 2 cut(s) 264, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.