rRNA processing
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G03180 AT4G03180 |
| fragaria_vesca | FvH4_2g24850 |
| malus_domestica | MD03G1276600.v1.1 MD11G1299100.v1.1 |
| prunus_persica | Prupe.8G253400_v2.0.a1 |
| pyrus_communis | pycom03g22030 pycom11g26280 |
| rosa_chinensis | RchiOBHm_Chr6g0292701 |
| rosa_laevigata | RLG00000011998 |
| rosa_multiflora | Rmu_sc0000515.1_g000023 |
| rosa_roxburghii | Rroxscaffold_7G00174760 |
| rosa_rugosa | Rorug06G0229000 |
| rosa_samantha | Rh6AG342300 Rh6BG349600 Rh6CG356500 Rh6DG342600 |
| rosa_wichuraiana | Rw6G029840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 61 |
| AcsI | RAATTY | 3 cut(s) | 121, 401, 510 |
| AcuI | CTGAAG | 2 cut(s) | 297, 456 |
| AcvI | CACGTG | 1 cut(s) | 193 |
| AfaI | GTAC | 2 cut(s) | 68, 506 |
| AgsI | TTSAA | 3 cut(s) | 126, 515, 536 |
| AluBI | AGCT | 3 cut(s) | 135, 245, 440 |
| AluI | AGCT | 3 cut(s) | 135, 245, 440 |
| Alw26I | GTCTC | 1 cut(s) | 521 |
| AlwI | GGATC | 1 cut(s) | 61 |
| Ama87I | CYCGRG | 3 cut(s) | 85, 116, 257 |
| AoxI | GGCC | 2 cut(s) | 106, 408 |
| ApeKI | GCWGC | 1 cut(s) | 26 |
| ApoI | RAATTY | 3 cut(s) | 121, 401, 510 |
| AvaI | CYCGRG | 3 cut(s) | 85, 116, 257 |
| BbrPI | CACGTG | 1 cut(s) | 193 |
| BbvI | GCAGC | 1 cut(s) | 13 |
| BccI | CCATC | 2 cut(s) | 247, 275 |
| BceAI | ACGGC | 1 cut(s) | 93 |
| BcoDI | GTCTC | 1 cut(s) | 521 |
| BisI | GCNGC | 1 cut(s) | 27 |
| BlsI | GCNGC | 1 cut(s) | 28 |
| BmeT110I | CYCGRG | 3 cut(s) | 85, 116, 257 |
| BmiI | GGNNCC | 1 cut(s) | 541 |
| BsaAI | YACGTR | 2 cut(s) | 193, 332 |
| BsaBI | GATNNNNATC | 1 cut(s) | 58 |
| BsaJI | CCNNGG | 1 cut(s) | 86 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 82, 112 |
| Bse8I | GATNNNNATC | 1 cut(s) | 58 |
| BseDI | CCNNGG | 1 cut(s) | 86 |
| BseJI | GATNNNNATC | 1 cut(s) | 58 |
| BseRI | GAGGAG | 3 cut(s) | 103, 275, 278 |
| BseXI | GCAGC | 1 cut(s) | 13 |
| BseYI | CCCAGC | 1 cut(s) | 145 |
| Bsh1285I | CGRYCG | 1 cut(s) | 231 |
| BshFI | GGCC | 2 cut(s) | 108, 410 |
| BsiEI | CGRYCG | 1 cut(s) | 231 |
| BsiHKCI | CYCGRG | 3 cut(s) | 85, 116, 257 |
| BsmAI | GTCTC | 1 cut(s) | 521 |
| BsnI | GGCC | 2 cut(s) | 108, 410 |
| BsoBI | CYCGRG | 3 cut(s) | 85, 116, 257 |
| Bsp1407I | TGTACA | 1 cut(s) | 66 |
| Bsp143I | GATC | 1 cut(s) | 53 |
| BspANI | GGCC | 2 cut(s) | 108, 410 |
| BspLI | GGNNCC | 1 cut(s) | 541 |
| BspPI | GGATC | 1 cut(s) | 61 |
| BsrGI | TGTACA | 1 cut(s) | 66 |
| BssECI | CCNNGG | 1 cut(s) | 86 |
| BssMI | GATC | 1 cut(s) | 53 |
| Bst6I | CTCTTC | 2 cut(s) | 305, 360 |
| BstAUI | TGTACA | 1 cut(s) | 66 |
| BstBAI | YACGTR | 2 cut(s) | 193, 332 |
| BstKTI | GATC | 1 cut(s) | 56 |
| BstMAI | GTCTC | 1 cut(s) | 521 |
| BstMBI | GATC | 1 cut(s) | 53 |
| BstMCI | CGRYCG | 1 cut(s) | 231 |
| BstV1I | GCAGC | 1 cut(s) | 13 |
| BsuRI | GGCC | 2 cut(s) | 108, 410 |
| CseI | GACGC | 1 cut(s) | 32 |
| Csp6I | GTAC | 2 cut(s) | 67, 505 |
| CviAII | CATG | 3 cut(s) | 151, 362, 544 |
| CviQI | GTAC | 2 cut(s) | 67, 505 |
| DpnI | GATC | 1 cut(s) | 55 |
| DpnII | GATC | 1 cut(s) | 53 |
| Eam1104I | CTCTTC | 2 cut(s) | 305, 360 |
| EarI | CTCTTC | 2 cut(s) | 305, 360 |
| Eco57I | CTGAAG | 2 cut(s) | 297, 456 |
| Eco72I | CACGTG | 1 cut(s) | 193 |
| Eco88I | CYCGRG | 3 cut(s) | 85, 116, 257 |
| EcoRI | GAATTC | 2 cut(s) | 121, 510 |
| FaeI | CATG | 3 cut(s) | 154, 365, 547 |
| FatI | CATG | 3 cut(s) | 150, 361, 543 |
| Fnu4HI | GCNGC | 1 cut(s) | 27 |
| Fsp4HI | GCNGC | 1 cut(s) | 27 |
| GluI | GCNGC | 1 cut(s) | 27 |
| GsaI | CCCAGC | 1 cut(s) | 149 |
| HaeIII | GGCC | 2 cut(s) | 108, 410 |
| HgaI | GACGC | 1 cut(s) | 32 |
| Hin1II | CATG | 3 cut(s) | 154, 365, 547 |
| HinfI | GANTC | 2 cut(s) | 7, 326 |
| Hpy166II | GTNNAC | 1 cut(s) | 67 |
| Hpy188I | TCNGA | 3 cut(s) | 49, 436, 444 |
| Hpy188III | TCNNGA | 2 cut(s) | 116, 118 |
| Hpy8I | GTNNAC | 1 cut(s) | 67 |
| Hpy99I | CGWCG | 1 cut(s) | 53 |
| HpyAV | CCTTC | 3 cut(s) | 370, 385, 442 |
| HpyCH4IV | ACGT | 3 cut(s) | 15, 192, 331 |
| HpyCH4V | TGCA | 1 cut(s) | 29 |
| HpySE526I | ACGT | 3 cut(s) | 15, 192, 331 |
| Hsp92II | CATG | 3 cut(s) | 154, 365, 547 |
| Kzo9I | GATC | 1 cut(s) | 53 |
| LmnI | GCTCC | 1 cut(s) | 545 |
| LpnPI | CCDG | 4 cut(s) | 159, 392, 424, 507 |
| Lsp1109I | GCAGC | 1 cut(s) | 13 |
| MaeII | ACGT | 3 cut(s) | 15, 192, 331 |
| MalI | GATC | 1 cut(s) | 55 |
| MboI | GATC | 1 cut(s) | 53 |
| MluCI | AATT | 4 cut(s) | 121, 334, 401, 510 |
| MmeI | TCCRAC | 1 cut(s) | 72 |
| MnlI | CCTC | 5 cut(s) | 81, 253, 256, 388, 438 |
| MseI | TTAA | 1 cut(s) | 338 |
| NdeII | GATC | 1 cut(s) | 53 |
| NlaIII | CATG | 3 cut(s) | 154, 365, 547 |
| NlaIV | GGNNCC | 1 cut(s) | 541 |
| PaeR7I | CTCGAG | 2 cut(s) | 116, 257 |
| PfeI | GAWTC | 2 cut(s) | 7, 326 |
| PkrI | GCNGC | 1 cut(s) | 28 |
| PmaCI | CACGTG | 1 cut(s) | 193 |
| PmlI | CACGTG | 1 cut(s) | 193 |
| Ppu21I | YACGTR | 2 cut(s) | 193, 332 |
| PspCI | CACGTG | 1 cut(s) | 193 |
| PspFI | CCCAGC | 1 cut(s) | 145 |
| PspN4I | GGNNCC | 1 cut(s) | 541 |
| PspXI | VCTCGAGB | 1 cut(s) | 257 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 122, 154 |
| RsaI | GTAC | 2 cut(s) | 68, 506 |
| RsaNI | GTAC | 2 cut(s) | 67, 505 |
| SaqAI | TTAA | 1 cut(s) | 338 |
| SatI | GCNGC | 1 cut(s) | 27 |
| Sau3AI | GATC | 1 cut(s) | 53 |
| SetI | ASST | 7 cut(s) | 18, 137, 195, 247, 334, 442, 490 |
| Sfr274I | CTCGAG | 2 cut(s) | 116, 257 |
| SlaI | CTCGAG | 2 cut(s) | 116, 257 |
| SmlI | CTYRAG | 2 cut(s) | 116, 257 |
| SmoI | CTYRAG | 2 cut(s) | 116, 257 |
| Sse9I | AATT | 4 cut(s) | 121, 334, 401, 510 |
| TaiI | ACGT | 3 cut(s) | 18, 195, 334 |
| TaqI | TCGA | 4 cut(s) | 10, 56, 117, 258 |
| TaqII | GACCGA | 1 cut(s) | 245 |
| TasI | AATT | 4 cut(s) | 121, 334, 401, 510 |
| TatI | WGTACW | 2 cut(s) | 66, 504 |
| TfiI | GAWTC | 2 cut(s) | 7, 326 |
| Tru1I | TTAA | 1 cut(s) | 338 |
| Tru9I | TTAA | 1 cut(s) | 338 |
| TseI | GCWGC | 1 cut(s) | 26 |
| TspDTI | ATGAA | 4 cut(s) | 17, 378, 485, 515 |
| TspGWI | ACGGA | 1 cut(s) | 66 |
| XapI | RAATTY | 3 cut(s) | 121, 401, 510 |
| XhoI | CTCGAG | 2 cut(s) | 116, 257 |