MD11G1299100.v1.1

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0012951
Physical Location & Seq
Reverse (-)
41572614 .. 41574005
1392 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1299100.v1.1.491

Sequence Viewer

Length: 693 bp
ATGAAGAATCAACACCCAAAACACGAAGGAAACAGAGAGAAATTCAGCGGCTCGAGATCGAGTAGCATGAAGAAGAAGAAGAAGAACATGAGGAGGATGGGCGGTCAAGGCCTTTCGCTCGAGGCCTTCGCGAGTGCCAAATCGAACAGCAGCTACTTCAACCCAGCTTTGATTAAGAAGCAGAAGGAGCTCTACAAGAACTCCAAGTATGTGAACAAGTATAAGAAGTCACTGAAACAACAGCAGAGCAATCCTCCGTTGGCGATAAGCCGCTTCGAGGAGGAGATGGAAACCGAAGATGGTAAAAGGGAGAGCAAAACGGGATATGTTAGTAAGAAGGAGAATGAGACTGAATGTGGTAGTAAAATGGAGAGTGGAGCTGGAGATAGTAGTGAAAAGGAGAACGAAACTGGAGGTGGTAGTAAGATGAGTAAGAATGACAAGAAGAAAAAGAAGTACGGTGCTCGTAGTATAATGAAAATGTATGAGATGAAACATGAAGATGAACAGAAGGAGAGAATGGAGAGGGAGGCGATTATTCAGGCAAAGAAGGAAGAACGAGAAAAGGCGGAAGCACGAAGGAAGTCTTCTAGGGAGAAGATGCTTAAGAAAACGCATAAAGGTCAGCCTGTTATGAAGTACAGAATTCAGCATCTTTTGGAGACTATTCAAGGTTCTTCGAAGCAAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
rRNA_processing

Protein Analysis

231

Amino Acids

26.55

Weight (kDa)

9.9

Isoelectric Point (pI)

56.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
rRNA_processing PF08524 131 - 224 1.9e-09 rRNA processing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012951)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03180 AT4G03180
fragaria_vesca FvH4_2g24850
malus_domestica MD03G1276600.v1.1 MD11G1299100.v1.1
prunus_persica Prupe.8G253400_v2.0.a1
pyrus_communis pycom03g22030 pycom11g26280
rosa_chinensis RchiOBHm_Chr6g0292701
rosa_laevigata RLG00000011998
rosa_multiflora Rmu_sc0000515.1_g000023
rosa_roxburghii Rroxscaffold_7G00174760
rosa_rugosa Rorug06G0229000
rosa_samantha Rh6AG342300 Rh6BG349600 Rh6CG356500 Rh6DG342600
rosa_wichuraiana Rw6G029840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 131
AciI CCGC 4 cut(s) 48, 102, 271, 569
AcsI RAATTY 2 cut(s) 41, 645
AfaI GTAC 2 cut(s) 458, 641
AfiI CCNNNNNNNGG 1 cut(s) 277
AflII CTTAAG 1 cut(s) 605
AgsI TTSAA 2 cut(s) 160, 671
AluBI AGCT 4 cut(s) 153, 167, 190, 380
AluI AGCT 4 cut(s) 153, 167, 190, 380
Alw21I GWGCWC 2 cut(s) 192, 466
Alw26I GTCTC 2 cut(s) 341, 656
Ama87I CYCGRG 2 cut(s) 52, 119
AoxI GGCC 2 cut(s) 109, 123
ApeKI GCWGC 1 cut(s) 150
ApoI RAATTY 2 cut(s) 41, 645
AsuII TTCGAA 1 cut(s) 680
AvaI CYCGRG 2 cut(s) 52, 119
BanII GRGCYC 1 cut(s) 192
BarI GAAGNNNNNNTAC 2 cut(s) 176, 208
BbsI GAAGAC 1 cut(s) 579
Bbv12I GWGCWC 2 cut(s) 192, 466
BbvI GCAGC 1 cut(s) 162
BccI CCATC 3 cut(s) 91, 280, 293
BcoDI GTCTC 2 cut(s) 341, 656
BfaI CTAG 1 cut(s) 591
BfrI CTTAAG 1 cut(s) 605
BisI GCNGC 3 cut(s) 49, 151, 271
BlsI GCNGC 3 cut(s) 50, 152, 272
BmeT110I CYCGRG 2 cut(s) 52, 119
BmsI GCATC 2 cut(s) 591, 661
BpiI GAAGAC 1 cut(s) 579
BplI GAGNNNNNCTC 2 cut(s) 238, 270
BpmI CTGGAG 2 cut(s) 402, 432
Bpu14I TTCGAA 1 cut(s) 680
BsaXI ACNNNNNCTCC 2 cut(s) 185, 215
Bsc4I CCNNNNNNNGG 1 cut(s) 277
Bse1I ACTGG 1 cut(s) 415
BseGI GGATG 1 cut(s) 102
BseLI CCNNNNNNNGG 1 cut(s) 277
BseNI ACTGG 1 cut(s) 415
BseRI GAGGAG 3 cut(s) 106, 293, 296
BseXI GCAGC 1 cut(s) 162
BseYI CCCAGC 1 cut(s) 163
Bsh1236I CGCG 1 cut(s) 131
BshFI GGCC 2 cut(s) 111, 125
BsiHKAI GWGCWC 2 cut(s) 192, 466
BsiHKCI CYCGRG 2 cut(s) 52, 119
BslI CCNNNNNNNGG 1 cut(s) 277
BsmAI GTCTC 2 cut(s) 341, 656
BsnI GGCC 2 cut(s) 111, 125
BsoBI CYCGRG 2 cut(s) 52, 119
Bsp119I TTCGAA 1 cut(s) 680
Bsp1286I GDGCHC 2 cut(s) 192, 466
Bsp143I GATC 1 cut(s) 56
Bsp68I TCGCGA 1 cut(s) 131
BspACI CCGC 4 cut(s) 48, 102, 271, 569
BspANI GGCC 2 cut(s) 111, 125
BspFNI CGCG 1 cut(s) 131
BspT104I TTCGAA 1 cut(s) 680
BspTI CTTAAG 1 cut(s) 605
BsrI ACTGG 1 cut(s) 415
BssMI GATC 1 cut(s) 56
Bst4CI ACNGT 1 cut(s) 461
BstAFI CTTAAG 1 cut(s) 605
BstBI TTCGAA 1 cut(s) 680
BstC8I GCNNGC 1 cut(s) 687
BstF5I GGATG 1 cut(s) 102
BstFNI CGCG 1 cut(s) 131
BstKTI GATC 1 cut(s) 59
BstMAI GTCTC 2 cut(s) 341, 656
BstMBI GATC 1 cut(s) 56
BstMWI GCNNNNNNNGC 2 cut(s) 108, 187
BstUI CGCG 1 cut(s) 131
BstV1I GCAGC 1 cut(s) 162
BstV2I GAAGAC 1 cut(s) 579
BsuRI GGCC 2 cut(s) 111, 125
BtsCI GGATG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 230
BtuMI TCGCGA 1 cut(s) 131
Cac8I GCNNGC 1 cut(s) 687
Csp6I GTAC 2 cut(s) 457, 640
CviAII CATG 3 cut(s) 67, 88, 497
CviJI RGCY 9 cut(s) 51, 111, 125, 153, 167, 190, 270, 380, 628
CviKI_1 RGCY 9 cut(s) 51, 111, 125, 153, 167, 190, 270, 380, 628
CviQI GTAC 2 cut(s) 457, 640
DpnI GATC 1 cut(s) 58
DpnII GATC 1 cut(s) 56
EciI GGCGGA 1 cut(s) 584
Ecl136II GAGCTC 1 cut(s) 190
Eco147I AGGCCT 2 cut(s) 111, 125
Eco24I GRGCYC 1 cut(s) 192
Eco53kI GAGCTC 1 cut(s) 190
Eco88I CYCGRG 2 cut(s) 52, 119
EcoICRI GAGCTC 1 cut(s) 190
EcoRI GAATTC 1 cut(s) 645
EcoT38I GRGCYC 1 cut(s) 192
FaeI CATG 3 cut(s) 70, 91, 500
FalI AAGNNNNNCTT 2 cut(s) 571, 603
FatI CATG 3 cut(s) 66, 87, 496
Fnu4HI GCNGC 3 cut(s) 49, 151, 271
FokI GGATG 1 cut(s) 109
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 3 cut(s) 49, 151, 271
FspBI CTAG 1 cut(s) 591
GluI GCNGC 3 cut(s) 49, 151, 271
GsaI CCCAGC 1 cut(s) 167
GsuI CTGGAG 2 cut(s) 402, 432
HaeIII GGCC 2 cut(s) 111, 125
Hin1II CATG 3 cut(s) 70, 91, 500
HinfI GANTC 1 cut(s) 7
Hpy166II GTNNAC 1 cut(s) 214
Hpy188III TCNNGA 2 cut(s) 54, 130
Hpy8I GTNNAC 1 cut(s) 214
HpyAV CCTTC 7 cut(s) 20, 136, 178, 331, 505, 544, 573
HpyCH4III ACNGT 1 cut(s) 461
HpyF10VI GCNNNNNNNGC 2 cut(s) 108, 187
Hsp92II CATG 3 cut(s) 70, 91, 500
Kzo9I GATC 1 cut(s) 56
LmnI GCTCC 2 cut(s) 187, 377
LpnPI CCDG 5 cut(s) 177, 366, 396, 527, 642
Lsp1109I GCAGC 1 cut(s) 162
LweI GCATC 2 cut(s) 591, 661
MaeI CTAG 1 cut(s) 591
MaeIII GTNAC 1 cut(s) 228
MalI GATC 1 cut(s) 58
MboI GATC 1 cut(s) 56
MhlI GDGCHC 2 cut(s) 192, 466
MluCI AATT 2 cut(s) 41, 645
MnlI CCTC 9 cut(s) 84, 87, 115, 264, 271, 274, 407, 519, 523
MseI TTAA 2 cut(s) 174, 606
MslI CAYNNNNRTG 1 cut(s) 501
MspA1I CMGCKG 1 cut(s) 48
MspCI CTTAAG 1 cut(s) 605
MvnI CGCG 1 cut(s) 131
MwoI GCNNNNNNNGC 2 cut(s) 108, 187
NdeII GATC 1 cut(s) 56
NlaIII CATG 3 cut(s) 70, 91, 500
NmuCI GTSAC 1 cut(s) 228
NruI TCGCGA 1 cut(s) 131
NspV TTCGAA 1 cut(s) 680
PaeR7I CTCGAG 2 cut(s) 52, 119
PceI AGGCCT 2 cut(s) 111, 125
PfeI GAWTC 1 cut(s) 7
PkrI GCNGC 3 cut(s) 50, 152, 272
Psp124BI GAGCTC 1 cut(s) 192
PspFI CCCAGC 1 cut(s) 163
PspXI VCTCGAGB 1 cut(s) 119
PsrI GAACNNNNNNTAC 2 cut(s) 137, 169
RruI TCGCGA 1 cut(s) 131
RsaI GTAC 2 cut(s) 458, 641
RsaNI GTAC 2 cut(s) 457, 640
RseI CAYNNNNRTG 1 cut(s) 501
SacI GAGCTC 1 cut(s) 192
SaqAI TTAA 2 cut(s) 174, 606
SatI GCNGC 3 cut(s) 49, 151, 271
Sau3AI GATC 1 cut(s) 56
SduI GDGCHC 2 cut(s) 192, 466
SetI ASST 7 cut(s) 155, 169, 192, 382, 418, 625, 676
SfaNI GCATC 2 cut(s) 591, 661
Sfr274I CTCGAG 2 cut(s) 52, 119
SfuI TTCGAA 1 cut(s) 680
SlaI CTCGAG 2 cut(s) 52, 119
SmiMI CAYNNNNRTG 1 cut(s) 501
SmlI CTYRAG 3 cut(s) 52, 119, 605
SmoI CTYRAG 3 cut(s) 52, 119, 605
Sse9I AATT 2 cut(s) 41, 645
SseBI AGGCCT 2 cut(s) 111, 125
SsiI CCGC 4 cut(s) 48, 102, 271, 569
SspMI CTAG 1 cut(s) 591
SstI GAGCTC 1 cut(s) 192
StuI AGGCCT 2 cut(s) 111, 125
TaaI ACNGT 1 cut(s) 461
TaqI TCGA 6 cut(s) 53, 59, 120, 143, 276, 680
TasI AATT 2 cut(s) 41, 645
TatI WGTACW 1 cut(s) 639
TauI GCSGC 2 cut(s) 51, 273
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 2 cut(s) 174, 606
Tru9I TTAA 2 cut(s) 174, 606
TscAI CASTG 1 cut(s) 237
TseFI GTSAC 1 cut(s) 228
TseI GCWGC 1 cut(s) 150
Tsp45I GTSAC 1 cut(s) 228
TspDTI ATGAA 7 cut(s) 17, 83, 491, 506, 513, 519, 650
TspGWI ACGGA 1 cut(s) 246
TspRI CASTG 1 cut(s) 237
Vha464I CTTAAG 1 cut(s) 605
XapI RAATTY 2 cut(s) 41, 645
XhoI CTCGAG 2 cut(s) 52, 119
XspI CTAG 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.