Rroxscaffold_7G00174760

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0012951
Physical Location & Seq
Forward (+)
14469586 .. 14472469
2884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00174760.1

Sequence Viewer

Length: 741 bp
ATGAAGAATCGAAACCCAAAAGACGCTGCAATCAACAGAGAGAAATCCGACGGCTCGAAATCGGTGTACAATAAGAAGAAGAACCCAAGGAGATTTGGTTGGCAAGGCCGTTCTCTCGAGAATTCAACGAACAGCTACTACAACCCAGCCATCATAACTGCCATAGGCTTAAAAAGTGAAGAAATGTACATTCTAATGGCTAATAGTGCATTGGAGTTGATTGCACAATCTAATCAAATTGGATCCTGGAGTTCTCTTGTCGTAAAAGTGGACAGGGGAATTAATTCCCTCTTCTGTTTTGCGCTTAATCTTAAAAGGTTTGCGTTCTGCTTTCTTTCAGAGAAAAAAAGGGAGTTCTATGATAATGCCAAGCACGTGAAGAAGTATAAGAAGTTGGTAAAGCAACAGCCGACCGATGTTCCATCAGCTATAATACCACTCGAGGAGGAGAATGAAACTGAAGATGGTAGCAAGATGAGTAAGAATAACAAGAAGAGAAAAGATAGAGAATCACGTAATTTAATAGAAATATATGAGAAGAAACATGAAGAGATAAAGAAGGCAAGAATGGAGAAGGAGGCTAAATTTCAGGCCAGAAAGGAAGAAAGAGAGAAGTCTGAAGCTCGGAGGAAGGCTATTAGGGAGAAGATGATGAAGAAAACGCATAAAGGTCAGCCTGTAATGAAGTACAGAATTCAACATCTTTTGGAGACTATTCAAGGCTCCATGAATAAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
rRNA_processing

Protein Analysis

246

Amino Acids

28.8

Weight (kDa)

9.93

Isoelectric Point (pI)

52.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
rRNA_processing PF08524 114 - 240 2.5e-14 rRNA processing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012951)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03180 AT4G03180
fragaria_vesca FvH4_2g24850
malus_domestica MD03G1276600.v1.1 MD11G1299100.v1.1
prunus_persica Prupe.8G253400_v2.0.a1
pyrus_communis pycom03g22030 pycom11g26280
rosa_chinensis RchiOBHm_Chr6g0292701
rosa_laevigata RLG00000011998
rosa_multiflora Rmu_sc0000515.1_g000023
rosa_roxburghii Rroxscaffold_7G00174760
rosa_rugosa Rorug06G0229000
rosa_samantha Rh6AG342300 Rh6BG349600 Rh6CG356500 Rh6DG342600
rosa_wichuraiana Rw6G029840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 237, 250
AcsI RAATTY 3 cut(s) 121, 584, 693
AcuI CTGAAG 2 cut(s) 480, 639
AcvI CACGTG 1 cut(s) 376
AfaI GTAC 3 cut(s) 68, 188, 689
AgsI TTSAA 3 cut(s) 126, 698, 719
AjnI CCWGG 1 cut(s) 245
AluBI AGCT 3 cut(s) 135, 428, 623
AluI AGCT 3 cut(s) 135, 428, 623
Alw26I GTCTC 1 cut(s) 704
AlwI GGATC 2 cut(s) 237, 250
Ama87I CYCGRG 2 cut(s) 116, 440
AoxI GGCC 2 cut(s) 106, 591
ApeKI GCWGC 1 cut(s) 26
ApoI RAATTY 3 cut(s) 121, 584, 693
AseI ATTAAT 1 cut(s) 282
Asp700I GAANNNNTTC 1 cut(s) 283
AspLEI GCGC 1 cut(s) 304
AvaI CYCGRG 2 cut(s) 116, 440
BamHI GGATCC 1 cut(s) 242
BbrPI CACGTG 1 cut(s) 376
BbvI GCAGC 1 cut(s) 13
BccI CCATC 3 cut(s) 158, 430, 458
BceAI ACGGC 2 cut(s) 67, 93
BciT130I CCWGG 1 cut(s) 247
BcoDI GTCTC 1 cut(s) 704
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme1390I CCNGG 1 cut(s) 247
BmeT110I CYCGRG 2 cut(s) 116, 440
BmiI GGNNCC 2 cut(s) 244, 724
BmrFI CCNGG 1 cut(s) 247
BpmI CTGGAG 1 cut(s) 268
BsaAI YACGTR 2 cut(s) 376, 515
BsaJI CCNNGG 1 cut(s) 86
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
BseBI CCWGG 1 cut(s) 247
BseDI CCNNGG 1 cut(s) 86
BseRI GAGGAG 2 cut(s) 458, 461
BseXI GCAGC 1 cut(s) 13
BseYI CCCAGC 1 cut(s) 145
Bsh1285I CGRYCG 1 cut(s) 414
BshFI GGCC 2 cut(s) 108, 593
BsiEI CGRYCG 1 cut(s) 414
BsiHKCI CYCGRG 2 cut(s) 116, 440
BsmAI GTCTC 1 cut(s) 704
BsnI GGCC 2 cut(s) 108, 593
BsoBI CYCGRG 2 cut(s) 116, 440
Bsp1407I TGTACA 2 cut(s) 66, 186
Bsp143I GATC 1 cut(s) 242
BspANI GGCC 2 cut(s) 108, 593
BspLI GGNNCC 2 cut(s) 244, 724
BspPI GGATC 2 cut(s) 237, 250
BsrGI TGTACA 2 cut(s) 66, 186
BssECI CCNNGG 1 cut(s) 86
BssMI GATC 1 cut(s) 242
BssT1I CCWWGG 1 cut(s) 86
Bst2UI CCWGG 1 cut(s) 247
Bst6I CTCTTC 3 cut(s) 296, 488, 543
BstAUI TGTACA 2 cut(s) 66, 186
BstBAI YACGTR 2 cut(s) 376, 515
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 1 cut(s) 245
BstMAI GTCTC 1 cut(s) 704
BstMBI GATC 1 cut(s) 242
BstMCI CGRYCG 1 cut(s) 414
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstNI CCWGG 1 cut(s) 247
BstSCI CCNGG 1 cut(s) 245
BstV1I GCAGC 1 cut(s) 13
BstX2I RGATCY 1 cut(s) 242
BstYI RGATCY 1 cut(s) 242
BsuRI GGCC 2 cut(s) 108, 593
CfoI GCGC 1 cut(s) 304
CseI GACGC 1 cut(s) 32
Csp6I GTAC 3 cut(s) 67, 187, 688
CviAII CATG 2 cut(s) 545, 727
CviQI GTAC 3 cut(s) 67, 187, 688
DpnI GATC 1 cut(s) 244
DpnII GATC 1 cut(s) 242
Eam1104I CTCTTC 3 cut(s) 296, 488, 543
EarI CTCTTC 3 cut(s) 296, 488, 543
Eco130I CCWWGG 1 cut(s) 86
Eco57I CTGAAG 2 cut(s) 480, 639
Eco72I CACGTG 1 cut(s) 376
Eco88I CYCGRG 2 cut(s) 116, 440
EcoRI GAATTC 2 cut(s) 121, 693
EcoRII CCWGG 1 cut(s) 245
EcoT14I CCWWGG 1 cut(s) 86
ErhI CCWWGG 1 cut(s) 86
FaeI CATG 2 cut(s) 548, 730
FatI CATG 2 cut(s) 544, 726
Fnu4HI GCNGC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 27
GlaI GCGC 1 cut(s) 303
GluI GCNGC 1 cut(s) 27
GsaI CCCAGC 1 cut(s) 149
GsuI CTGGAG 1 cut(s) 268
HaeIII GGCC 2 cut(s) 108, 593
HgaI GACGC 1 cut(s) 32
HhaI GCGC 1 cut(s) 304
Hin1II CATG 2 cut(s) 548, 730
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HinfI GANTC 2 cut(s) 7, 509
Hpy166II GTNNAC 2 cut(s) 67, 271
Hpy188I TCNGA 4 cut(s) 49, 340, 619, 627
Hpy188III TCNNGA 2 cut(s) 116, 118
Hpy8I GTNNAC 2 cut(s) 67, 271
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 3 cut(s) 553, 568, 625
HpyCH4IV ACGT 2 cut(s) 375, 514
HpyCH4V TGCA 3 cut(s) 29, 209, 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpySE526I ACGT 2 cut(s) 375, 514
Hsp92II CATG 2 cut(s) 548, 730
HspAI GCGC 1 cut(s) 302
Kzo9I GATC 1 cut(s) 242
LmnI GCTCC 1 cut(s) 728
LpnPI CCDG 7 cut(s) 159, 232, 259, 259, 575, 607, 690
Lsp1109I GCAGC 1 cut(s) 13
MaeII ACGT 2 cut(s) 375, 514
MalI GATC 1 cut(s) 244
MboI GATC 1 cut(s) 242
MflI RGATCY 1 cut(s) 242
MluCI AATT 7 cut(s) 121, 237, 279, 283, 517, 584, 693
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 5 cut(s) 299, 436, 439, 571, 621
MroXI GAANNNNTTC 1 cut(s) 283
MseI TTAA 5 cut(s) 170, 282, 306, 312, 521
MslI CAYNNNNRTG 1 cut(s) 194
MspR9I CCNGG 1 cut(s) 247
MvaI CCWGG 1 cut(s) 247
MwoI GCNNNNNNNGC 1 cut(s) 206
NdeII GATC 1 cut(s) 242
NlaIII CATG 2 cut(s) 548, 730
NlaIV GGNNCC 2 cut(s) 244, 724
PaeR7I CTCGAG 2 cut(s) 116, 440
PdmI GAANNNNTTC 1 cut(s) 283
PfeI GAWTC 2 cut(s) 7, 509
PfoI TCCNGGA 1 cut(s) 245
PkrI GCNGC 1 cut(s) 28
PmaCI CACGTG 1 cut(s) 376
PmlI CACGTG 1 cut(s) 376
Ppu21I YACGTR 2 cut(s) 376, 515
PshBI ATTAAT 1 cut(s) 282
Psp6I CCWGG 1 cut(s) 245
PspCI CACGTG 1 cut(s) 376
PspFI CCCAGC 1 cut(s) 145
PspGI CCWGG 1 cut(s) 245
PspN4I GGNNCC 2 cut(s) 244, 724
PspXI VCTCGAGB 1 cut(s) 440
PsrI GAACNNNNNNTAC 2 cut(s) 122, 154
PsuI RGATCY 1 cut(s) 242
RsaI GTAC 3 cut(s) 68, 188, 689
RsaNI GTAC 3 cut(s) 67, 187, 688
RseI CAYNNNNRTG 1 cut(s) 194
SaqAI TTAA 5 cut(s) 170, 282, 306, 312, 521
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 1 cut(s) 242
ScrFI CCNGG 1 cut(s) 247
SetI ASST 7 cut(s) 137, 320, 378, 430, 517, 625, 673
Sfr274I CTCGAG 2 cut(s) 116, 440
SlaI CTCGAG 2 cut(s) 116, 440
SmiMI CAYNNNNRTG 1 cut(s) 194
SmlI CTYRAG 2 cut(s) 116, 440
SmoI CTYRAG 2 cut(s) 116, 440
Sse9I AATT 7 cut(s) 121, 237, 279, 283, 517, 584, 693
StyD4I CCNGG 1 cut(s) 245
StyI CCWWGG 1 cut(s) 86
TaiI ACGT 2 cut(s) 378, 517
TaqI TCGA 4 cut(s) 10, 56, 117, 441
TaqII GACCGA 1 cut(s) 428
TasI AATT 7 cut(s) 121, 237, 279, 283, 517, 584, 693
TatI WGTACW 3 cut(s) 66, 186, 687
TfiI GAWTC 2 cut(s) 7, 509
Tru1I TTAA 5 cut(s) 170, 282, 306, 312, 521
Tru9I TTAA 5 cut(s) 170, 282, 306, 312, 521
TseI GCWGC 1 cut(s) 26
TspDTI ATGAA 5 cut(s) 17, 468, 561, 668, 698
VspI ATTAAT 1 cut(s) 282
XapI RAATTY 3 cut(s) 121, 584, 693
XhoI CTCGAG 2 cut(s) 116, 440
XmnI GAANNNNTTC 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.