Rh6BG349600

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0012951
Physical Location & Seq
Reverse (-)
57998197 .. 58000129
1933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG349600.1

Sequence Viewer

Length: 558 bp
ATGTACATTCTAATGGCCAATAGTGCATTGGAGTTGATTGCACAATCTAATCAAATTGGATCCTGGAATTCTCTTGTCGTAAAAGTGGACAGGGGAATTAATTCCCTCTTCTGTTTTGCCCTTAATCTTAAAAGGTTTGCATTCTGTTTTCTTTCAGAGAAAAAAAGGGAGTTCTACGATAATGCCAAGCACGTGAAGAAGTATAAGAAGTTGGTAAAGCAACAGCCGACCGATGTTCCCTCAGCTATAATACCACTCGAGGAAGAAAATGAAACTGAAGATGGTTGCAAGATGAGTAAGAATAACAAGAAGAGAAAAGATAGAGAATCACGTAATTTAATAGAAATATATGAGAAGAAACATGAAGAGATAGAGAAGGCAAGAATGGAGAAGGAGGCTAAATTTCAGGCCAGAAAGGAAGAAAGAGAGAAGTCTGAAGCTCGGAGGAAGGCTATTAGGGAGAAGATGATGAAGAAAACGCATAAAGGTCAGCCTGTTATGAAGTACAGAATTCAACATCTTTTGGAGACTATTCAAGGCTCCATGAATAAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
rRNA_processing

Protein Analysis

185

Amino Acids

21.9

Weight (kDa)

9.7

Isoelectric Point (pI)

58.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
rRNA_processing PF08524 53 - 179 1.1e-14 rRNA processing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012951)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03180 AT4G03180
fragaria_vesca FvH4_2g24850
malus_domestica MD03G1276600.v1.1 MD11G1299100.v1.1
prunus_persica Prupe.8G253400_v2.0.a1
pyrus_communis pycom03g22030 pycom11g26280
rosa_chinensis RchiOBHm_Chr6g0292701
rosa_laevigata RLG00000011998
rosa_multiflora Rmu_sc0000515.1_g000023
rosa_roxburghii Rroxscaffold_7G00174760
rosa_rugosa Rorug06G0229000
rosa_samantha Rh6AG342300 Rh6BG349600 Rh6CG356500 Rh6DG342600
rosa_wichuraiana Rw6G029840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 54, 67
AcoI YGGCCR 1 cut(s) 15
AcsI RAATTY 3 cut(s) 67, 401, 510
AcuI CTGAAG 2 cut(s) 297, 456
AcvI CACGTG 1 cut(s) 193
AfaI GTAC 2 cut(s) 5, 506
AgsI TTSAA 2 cut(s) 515, 536
AjnI CCWGG 1 cut(s) 62
AluBI AGCT 2 cut(s) 245, 440
AluI AGCT 2 cut(s) 245, 440
Alw26I GTCTC 1 cut(s) 521
AlwI GGATC 2 cut(s) 54, 67
Ama87I CYCGRG 1 cut(s) 257
AoxI GGCC 2 cut(s) 15, 408
ApoI RAATTY 3 cut(s) 67, 401, 510
AseI ATTAAT 1 cut(s) 99
Asp700I GAANNNNTTC 1 cut(s) 100
AvaI CYCGRG 1 cut(s) 257
BalI TGGCCA 1 cut(s) 17
BamHI GGATCC 1 cut(s) 59
BbrPI CACGTG 1 cut(s) 193
BbvCI CCTCAGC 1 cut(s) 241
BccI CCATC 1 cut(s) 275
BciT130I CCWGG 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 521
Bme1390I CCNGG 1 cut(s) 64
BmeT110I CYCGRG 1 cut(s) 257
BmiI GGNNCC 2 cut(s) 61, 541
BmrFI CCNGG 1 cut(s) 64
Bpu10I CCTNAGC 1 cut(s) 241
BsaAI YACGTR 2 cut(s) 193, 332
BseBI CCWGG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 255
Bsh1285I CGRYCG 1 cut(s) 231
BshFI GGCC 2 cut(s) 17, 410
BsiEI CGRYCG 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 257
BsmAI GTCTC 1 cut(s) 521
BsmI GAATGC 1 cut(s) 140
BsnI GGCC 2 cut(s) 17, 410
BsoBI CYCGRG 1 cut(s) 257
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 1 cut(s) 59
BspANI GGCC 2 cut(s) 17, 410
BspCNI CTCAG 1 cut(s) 254
BspLI GGNNCC 2 cut(s) 61, 541
BspPI GGATC 2 cut(s) 54, 67
BsrGI TGTACA 1 cut(s) 3
BssMI GATC 1 cut(s) 59
Bst2UI CCWGG 1 cut(s) 64
Bst6I CTCTTC 3 cut(s) 113, 305, 360
BstAUI TGTACA 1 cut(s) 3
BstBAI YACGTR 2 cut(s) 193, 332
BstDEI CTNAG 1 cut(s) 241
BstKTI GATC 1 cut(s) 62
BstMAI GTCTC 1 cut(s) 521
BstMBI GATC 1 cut(s) 59
BstMCI CGRYCG 1 cut(s) 231
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNI CCWGG 1 cut(s) 64
BstSCI CCNGG 1 cut(s) 62
BstX2I RGATCY 1 cut(s) 59
BstYI RGATCY 1 cut(s) 59
BsuRI GGCC 2 cut(s) 17, 410
Csp6I GTAC 2 cut(s) 4, 505
CviAII CATG 2 cut(s) 362, 544
CviJI RGCY 9 cut(s) 17, 226, 245, 398, 410, 440, 452, 493, 540
CviKI_1 RGCY 9 cut(s) 17, 226, 245, 398, 410, 440, 452, 493, 540
CviQI GTAC 2 cut(s) 4, 505
DdeI CTNAG 1 cut(s) 241
DpnI GATC 1 cut(s) 61
DpnII GATC 1 cut(s) 59
EaeI YGGCCR 1 cut(s) 15
Eam1104I CTCTTC 3 cut(s) 113, 305, 360
EarI CTCTTC 3 cut(s) 113, 305, 360
Eco57I CTGAAG 2 cut(s) 297, 456
Eco72I CACGTG 1 cut(s) 193
Eco88I CYCGRG 1 cut(s) 257
EcoRI GAATTC 2 cut(s) 67, 510
EcoRII CCWGG 1 cut(s) 62
FaeI CATG 2 cut(s) 365, 547
FaiI YATR 9 cut(s) 204, 248, 349, 351, 363, 483, 500, 545, 556
FatI CATG 2 cut(s) 361, 543
HaeIII GGCC 2 cut(s) 17, 410
Hin1II CATG 2 cut(s) 365, 547
HinfI GANTC 1 cut(s) 326
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 3 cut(s) 157, 436, 444
Hpy8I GTNNAC 1 cut(s) 88
HpyAV CCTTC 3 cut(s) 370, 385, 442
HpyCH4IV ACGT 2 cut(s) 192, 331
HpyCH4V TGCA 4 cut(s) 26, 41, 140, 288
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpyF3I CTNAG 1 cut(s) 241
HpySE526I ACGT 2 cut(s) 192, 331
Hsp92II CATG 2 cut(s) 365, 547
Kzo9I GATC 1 cut(s) 59
LmnI GCTCC 1 cut(s) 545
LpnPI CCDG 6 cut(s) 49, 76, 76, 392, 424, 507
MaeII ACGT 2 cut(s) 192, 331
MalI GATC 1 cut(s) 61
MboI GATC 1 cut(s) 59
MflI RGATCY 1 cut(s) 59
MlsI TGGCCA 1 cut(s) 17
MluCI AATT 7 cut(s) 54, 67, 96, 100, 334, 401, 510
MluNI TGGCCA 1 cut(s) 17
MnlI CCTC 5 cut(s) 116, 250, 253, 388, 438
Mox20I TGGCCA 1 cut(s) 17
MroXI GAANNNNTTC 1 cut(s) 100
MscI TGGCCA 1 cut(s) 17
MseI TTAA 4 cut(s) 99, 123, 129, 338
MslI CAYNNNNRTG 1 cut(s) 11
Msp20I TGGCCA 1 cut(s) 17
MspR9I CCNGG 1 cut(s) 64
Mva1269I GAATGC 1 cut(s) 140
MvaI CCWGG 1 cut(s) 64
MwoI GCNNNNNNNGC 1 cut(s) 23
NdeII GATC 1 cut(s) 59
NlaIII CATG 2 cut(s) 365, 547
NlaIV GGNNCC 2 cut(s) 61, 541
PaeR7I CTCGAG 1 cut(s) 257
PctI GAATGC 1 cut(s) 140
PdmI GAANNNNTTC 1 cut(s) 100
PfeI GAWTC 1 cut(s) 326
PfoI TCCNGGA 1 cut(s) 62
PmaCI CACGTG 1 cut(s) 193
PmlI CACGTG 1 cut(s) 193
Ppu21I YACGTR 2 cut(s) 193, 332
PshBI ATTAAT 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 62
PspCI CACGTG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 62
PspN4I GGNNCC 2 cut(s) 61, 541
PspXI VCTCGAGB 1 cut(s) 257
PsuI RGATCY 1 cut(s) 59
RsaI GTAC 2 cut(s) 5, 506
RsaNI GTAC 2 cut(s) 4, 505
RseI CAYNNNNRTG 1 cut(s) 11
SaqAI TTAA 4 cut(s) 99, 123, 129, 338
Sau3AI GATC 1 cut(s) 59
ScrFI CCNGG 1 cut(s) 64
SetI ASST 6 cut(s) 137, 195, 247, 334, 442, 490
Sfr274I CTCGAG 1 cut(s) 257
SlaI CTCGAG 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 11
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 7 cut(s) 54, 67, 96, 100, 334, 401, 510
StyD4I CCNGG 1 cut(s) 62
TaiI ACGT 2 cut(s) 195, 334
TaqI TCGA 1 cut(s) 258
TaqII GACCGA 1 cut(s) 245
TasI AATT 7 cut(s) 54, 67, 96, 100, 334, 401, 510
TatI WGTACW 2 cut(s) 3, 504
TfiI GAWTC 1 cut(s) 326
Tru1I TTAA 4 cut(s) 99, 123, 129, 338
Tru9I TTAA 4 cut(s) 99, 123, 129, 338
TspDTI ATGAA 4 cut(s) 285, 378, 485, 515
VspI ATTAAT 1 cut(s) 99
XapI RAATTY 3 cut(s) 67, 401, 510
XcmI CCANNNNNNNNNTGG 1 cut(s) 25
XhoI CTCGAG 1 cut(s) 257
XmnI GAANNNNTTC 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.