rRNA processing
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G03180 AT4G03180 |
| fragaria_vesca | FvH4_2g24850 |
| malus_domestica | MD03G1276600.v1.1 MD11G1299100.v1.1 |
| prunus_persica | Prupe.8G253400_v2.0.a1 |
| pyrus_communis | pycom03g22030 pycom11g26280 |
| rosa_chinensis | RchiOBHm_Chr6g0292701 |
| rosa_laevigata | RLG00000011998 |
| rosa_multiflora | Rmu_sc0000515.1_g000023 |
| rosa_roxburghii | Rroxscaffold_7G00174760 |
| rosa_rugosa | Rorug06G0229000 |
| rosa_samantha | Rh6AG342300 Rh6BG349600 Rh6CG356500 Rh6DG342600 |
| rosa_wichuraiana | Rw6G029840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 3 cut(s) | 41, 217, 308 |
| AcuI | CTGAAG | 2 cut(s) | 272, 390 |
| AfaI | GTAC | 1 cut(s) | 629 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 564 |
| AflII | CTTAAG | 1 cut(s) | 593 |
| AgsI | TTSAA | 5 cut(s) | 46, 178, 314, 638, 659 |
| AluBI | AGCT | 2 cut(s) | 171, 563 |
| AluI | AGCT | 2 cut(s) | 171, 563 |
| Alw21I | GWGCWC | 1 cut(s) | 454 |
| Alw26I | GTCTC | 1 cut(s) | 644 |
| Ama87I | CYCGRG | 1 cut(s) | 134 |
| AoxI | GGCC | 3 cut(s) | 124, 138, 555 |
| ApeKI | GCWGC | 2 cut(s) | 165, 168 |
| ApoI | RAATTY | 3 cut(s) | 41, 217, 308 |
| AsuHPI | GGTGA | 1 cut(s) | 332 |
| AvaI | CYCGRG | 1 cut(s) | 134 |
| BarI | GAAGNNNNNNTAC | 1 cut(s) | 28 |
| Bbv12I | GWGCWC | 1 cut(s) | 454 |
| BbvI | GCAGC | 2 cut(s) | 177, 180 |
| BccI | CCATC | 2 cut(s) | 368, 398 |
| BceAI | ACGGC | 1 cut(s) | 64 |
| BcoDI | GTCTC | 1 cut(s) | 644 |
| BfrI | CTTAAG | 1 cut(s) | 593 |
| BisI | GCNGC | 2 cut(s) | 166, 169 |
| BlsI | GCNGC | 2 cut(s) | 167, 170 |
| BmeT110I | CYCGRG | 1 cut(s) | 134 |
| BmsI | GCATC | 2 cut(s) | 508, 579 |
| BpuEI | CTTGAG | 1 cut(s) | 314 |
| Bsa29I | ATCGAT | 1 cut(s) | 59 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 100, 130 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 564 |
| BseCI | ATCGAT | 1 cut(s) | 59 |
| BseGI | GGATG | 1 cut(s) | 523 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 564 |
| BseRI | GAGGAG | 2 cut(s) | 121, 430 |
| BseXI | GCAGC | 2 cut(s) | 177, 180 |
| BshFI | GGCC | 3 cut(s) | 126, 140, 557 |
| BshVI | ATCGAT | 1 cut(s) | 59 |
| BsiHKAI | GWGCWC | 1 cut(s) | 454 |
| BsiHKCI | CYCGRG | 1 cut(s) | 134 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 564 |
| BsmAI | GTCTC | 1 cut(s) | 644 |
| BsnI | GGCC | 3 cut(s) | 126, 140, 557 |
| BsoBI | CYCGRG | 1 cut(s) | 134 |
| Bsp1286I | GDGCHC | 1 cut(s) | 454 |
| Bsp143I | GATC | 1 cut(s) | 60 |
| BspANI | GGCC | 3 cut(s) | 126, 140, 557 |
| BspDI | ATCGAT | 1 cut(s) | 59 |
| BspTI | CTTAAG | 1 cut(s) | 593 |
| BssMI | GATC | 1 cut(s) | 60 |
| Bst4CI | ACNGT | 1 cut(s) | 320 |
| Bst6I | CTCTTC | 4 cut(s) | 294, 483, 489, 660 |
| BstAFI | CTTAAG | 1 cut(s) | 593 |
| BstF5I | GGATG | 1 cut(s) | 523 |
| BstKTI | GATC | 1 cut(s) | 63 |
| BstMAI | GTCTC | 1 cut(s) | 644 |
| BstMBI | GATC | 1 cut(s) | 60 |
| BstV1I | GCAGC | 2 cut(s) | 177, 180 |
| Bsu15I | ATCGAT | 1 cut(s) | 59 |
| BsuRI | GGCC | 3 cut(s) | 126, 140, 557 |
| BsuTUI | ATCGAT | 1 cut(s) | 59 |
| BtsCI | GGATG | 1 cut(s) | 523 |
| BtsIMutI | CAGTG | 1 cut(s) | 248 |
| ClaI | ATCGAT | 1 cut(s) | 59 |
| Csp6I | GTAC | 1 cut(s) | 628 |
| CviAII | CATG | 3 cut(s) | 82, 103, 485 |
| CviJI | RGCY | 8 cut(s) | 51, 126, 140, 171, 281, 557, 563, 616 |
| CviKI_1 | RGCY | 8 cut(s) | 51, 126, 140, 171, 281, 557, 563, 616 |
| CviQI | GTAC | 1 cut(s) | 628 |
| DpnI | GATC | 1 cut(s) | 62 |
| DpnII | GATC | 1 cut(s) | 60 |
| Eam1104I | CTCTTC | 4 cut(s) | 294, 483, 489, 660 |
| EarI | CTCTTC | 4 cut(s) | 294, 483, 489, 660 |
| Eco147I | AGGCCT | 2 cut(s) | 126, 140 |
| Eco57I | CTGAAG | 2 cut(s) | 272, 390 |
| Eco88I | CYCGRG | 1 cut(s) | 134 |
| EcoRI | GAATTC | 1 cut(s) | 217 |
| FaeI | CATG | 3 cut(s) | 85, 106, 488 |
| FatI | CATG | 3 cut(s) | 81, 102, 484 |
| Fnu4HI | GCNGC | 2 cut(s) | 166, 169 |
| FokI | GGATG | 1 cut(s) | 530 |
| Fsp4HI | GCNGC | 2 cut(s) | 166, 169 |
| GluI | GCNGC | 2 cut(s) | 166, 169 |
| HaeIII | GGCC | 3 cut(s) | 126, 140, 557 |
| Hin1II | CATG | 3 cut(s) | 85, 106, 488 |
| HinfI | GANTC | 1 cut(s) | 652 |
| HphI | GGTGA | 1 cut(s) | 332 |
| Hpy166II | GTNNAC | 1 cut(s) | 232 |
| Hpy188I | TCNGA | 1 cut(s) | 567 |
| Hpy8I | GTNNAC | 1 cut(s) | 232 |
| HpyAV | CCTTC | 7 cut(s) | 20, 67, 151, 379, 501, 532, 547 |
| HpyCH4III | ACNGT | 1 cut(s) | 320 |
| HpyCH4V | TGCA | 1 cut(s) | 668 |
| Hsp92II | CATG | 3 cut(s) | 85, 106, 488 |
| Kzo9I | GATC | 1 cut(s) | 60 |
| LpnPI | CCDG | 4 cut(s) | 19, 195, 515, 630 |
| Lsp1109I | GCAGC | 2 cut(s) | 177, 180 |
| LweI | GCATC | 2 cut(s) | 508, 579 |
| MaeIII | GTNAC | 1 cut(s) | 246 |
| MalI | GATC | 1 cut(s) | 62 |
| MboI | GATC | 1 cut(s) | 60 |
| MhlI | GDGCHC | 1 cut(s) | 454 |
| MluCI | AATT | 5 cut(s) | 41, 217, 308, 457, 633 |
| MlyI | GAGTC | 1 cut(s) | 646 |
| MnlI | CCTC | 9 cut(s) | 99, 130, 289, 408, 435, 484, 507, 561, 573 |
| MseI | TTAA | 2 cut(s) | 461, 594 |
| MspCI | CTTAAG | 1 cut(s) | 593 |
| NdeII | GATC | 1 cut(s) | 60 |
| NlaIII | CATG | 3 cut(s) | 85, 106, 488 |
| NmuCI | GTSAC | 1 cut(s) | 246 |
| PaeR7I | CTCGAG | 1 cut(s) | 134 |
| PceI | AGGCCT | 2 cut(s) | 126, 140 |
| PkrI | GCNGC | 2 cut(s) | 167, 170 |
| PleI | GAGTC | 1 cut(s) | 646 |
| PpsI | GAGTC | 1 cut(s) | 646 |
| PspXI | VCTCGAGB | 1 cut(s) | 134 |
| RsaI | GTAC | 1 cut(s) | 629 |
| RsaNI | GTAC | 1 cut(s) | 628 |
| SaqAI | TTAA | 2 cut(s) | 461, 594 |
| SatI | GCNGC | 2 cut(s) | 166, 169 |
| Sau3AI | GATC | 1 cut(s) | 60 |
| SchI | GAGTC | 1 cut(s) | 646 |
| SduI | GDGCHC | 1 cut(s) | 454 |
| SetI | ASST | 5 cut(s) | 173, 446, 565, 613, 664 |
| SfaNI | GCATC | 2 cut(s) | 508, 579 |
| Sfr274I | CTCGAG | 1 cut(s) | 134 |
| SlaI | CTCGAG | 1 cut(s) | 134 |
| SmlI | CTYRAG | 3 cut(s) | 134, 293, 593 |
| SmoI | CTYRAG | 3 cut(s) | 134, 293, 593 |
| Sse9I | AATT | 5 cut(s) | 41, 217, 308, 457, 633 |
| SseBI | AGGCCT | 2 cut(s) | 126, 140 |
| StuI | AGGCCT | 2 cut(s) | 126, 140 |
| TaaI | ACNGT | 1 cut(s) | 320 |
| TaqI | TCGA | 3 cut(s) | 53, 59, 135 |
| TasI | AATT | 5 cut(s) | 41, 217, 308, 457, 633 |
| TatI | WGTACW | 1 cut(s) | 627 |
| Tru1I | TTAA | 2 cut(s) | 461, 594 |
| Tru9I | TTAA | 2 cut(s) | 461, 594 |
| TscAI | CASTG | 1 cut(s) | 255 |
| TseFI | GTSAC | 1 cut(s) | 246 |
| TseI | GCWGC | 2 cut(s) | 165, 168 |
| Tsp45I | GTSAC | 1 cut(s) | 246 |
| TspDTI | ATGAA | 6 cut(s) | 17, 98, 321, 378, 501, 638 |
| TspRI | CASTG | 1 cut(s) | 255 |
| Vha464I | CTTAAG | 1 cut(s) | 593 |
| XapI | RAATTY | 3 cut(s) | 41, 217, 308 |
| XhoI | CTCGAG | 1 cut(s) | 134 |