pycom03g22030

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0012951
Physical Location & Seq
Forward (+)
22207419 .. 22208470
1052 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g22030.2

Sequence Viewer

Length: 696 bp
ATGATGAATCGACACCCAAAGCACGAAGAAAACAGAGAGAAATTCAACGGCTCGAGATCGAATAGCATGAAGAAGAAGAAAAACATGAGGAGGATGGGCGGGCAAGGGCTTTCACTCGAGGCCTTCGCGAACGCCAAATCGAACAGCAGCTACTTCAACCCAGCTTTGATTAAGAAGCAGAAAGAATTCTACAAGAATTCCAAGTACGTGAACAAGTATAAGAAGTCACTGAAGCAACAGCAGAGCAATCCTCCATTGGCGATAAGGCGCTTCGAGGAGGAGATTGAAACCAAAGATGGTGAAAAGGAGCGCGAAGCGGAGTATGTTAGTAAGAAGGAGAACGAGAACGAGACTGAATGTGGTAGTGAAATGGAGAACGGAACTGGAGATGATAGTAGAGAGGAGAACAAAACTGGAGGTGGTAGTAAGATGAGTAAGAACGACAAGAAGAAAAACAAGTACGGTGCTCGTAGTATATTGAAAGTGTATGAGATGAAACATGAAGATGAAGAGAAGGCAAGAATGGAGAGGGAGGCGATTATTCAGGCGAAGAAGGAAGAGCGAGAAAAGGCGGAAGCACAAAGGAAGTCTGCTAGAGAGAAGATGCTTAAGAAAACGCGTAAAGGTCAGCCTGTTATGAAGTACAGAATACAGCATCTTCTGGAGACTATTCAAGGTTCTTCAAAGCAAACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
rRNA_processing

Protein Analysis

232

Amino Acids

27.01

Weight (kDa)

9.74

Isoelectric Point (pI)

52.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012951)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03180 AT4G03180
fragaria_vesca FvH4_2g24850
malus_domestica MD03G1276600.v1.1 MD11G1299100.v1.1
prunus_persica Prupe.8G253400_v2.0.a1
pyrus_communis pycom03g22030 pycom11g26280
rosa_chinensis RchiOBHm_Chr6g0292701
rosa_laevigata RLG00000011998
rosa_multiflora Rmu_sc0000515.1_g000023
rosa_roxburghii Rroxscaffold_7G00174760
rosa_rugosa Rorug06G0229000
rosa_samantha Rh6AG342300 Rh6BG349600 Rh6CG356500 Rh6DG342600
rosa_wichuraiana Rw6G029840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 128, 312, 619
AciI CCGC 3 cut(s) 99, 317, 572
AcsI RAATTY 3 cut(s) 41, 185, 196
AcuI CTGAAG 1 cut(s) 251
AfaI GTAC 3 cut(s) 206, 461, 644
AflII CTTAAG 1 cut(s) 608
AflIII ACRYGT 1 cut(s) 617
AgsI TTSAA 6 cut(s) 46, 157, 287, 481, 674, 684
AluBI AGCT 2 cut(s) 150, 164
AluI AGCT 2 cut(s) 150, 164
Alw21I GWGCWC 1 cut(s) 469
Alw26I GTCTC 2 cut(s) 344, 659
Ama87I CYCGRG 2 cut(s) 52, 116
AoxI GGCC 1 cut(s) 120
ApeKI GCWGC 1 cut(s) 147
ApoI RAATTY 3 cut(s) 41, 185, 196
Asp700I GAANNNNTTC 1 cut(s) 185
AspLEI GCGC 2 cut(s) 270, 312
AsuHPI GGTGA 1 cut(s) 311
AvaI CYCGRG 2 cut(s) 52, 116
Bbv12I GWGCWC 1 cut(s) 469
BbvI GCAGC 1 cut(s) 159
BccI CCATC 2 cut(s) 88, 290
BceAI ACGGC 1 cut(s) 64
BcoDI GTCTC 2 cut(s) 344, 659
BfaI CTAG 1 cut(s) 594
BfoI RGCGCY 1 cut(s) 271
BfrI CTTAAG 1 cut(s) 608
BisI GCNGC 1 cut(s) 148
BlsI GCNGC 1 cut(s) 149
BmeT110I CYCGRG 2 cut(s) 52, 116
BmsI GCATC 2 cut(s) 594, 664
BplI GAGNNNNNCTC 2 cut(s) 235, 267
BpmI CTGGAG 3 cut(s) 405, 435, 683
BsaAI YACGTR 1 cut(s) 208
Bse1I ACTGG 2 cut(s) 388, 418
BseGI GGATG 1 cut(s) 99
BseNI ACTGG 2 cut(s) 388, 418
BseRI GAGGAG 4 cut(s) 103, 290, 293, 416
BseXI GCAGC 1 cut(s) 159
BseYI CCCAGC 1 cut(s) 160
Bsh1236I CGCG 3 cut(s) 128, 312, 619
BshFI GGCC 1 cut(s) 122
BsiHKAI GWGCWC 1 cut(s) 469
BsiHKCI CYCGRG 2 cut(s) 52, 116
BsmAI GTCTC 2 cut(s) 344, 659
BsnI GGCC 1 cut(s) 122
BsoBI CYCGRG 2 cut(s) 52, 116
Bsp1286I GDGCHC 1 cut(s) 469
Bsp143I GATC 1 cut(s) 56
Bsp68I TCGCGA 1 cut(s) 128
BspACI CCGC 3 cut(s) 99, 317, 572
BspANI GGCC 1 cut(s) 122
BspFNI CGCG 3 cut(s) 128, 312, 619
BspQI GCTCTTC 1 cut(s) 552
BspTI CTTAAG 1 cut(s) 608
BsrI ACTGG 2 cut(s) 388, 418
BssMI GATC 1 cut(s) 56
Bst4CI ACNGT 1 cut(s) 464
Bst6I CTCTTC 2 cut(s) 504, 552
BstAFI CTTAAG 1 cut(s) 608
BstBAI YACGTR 1 cut(s) 208
BstC8I GCNNGC 1 cut(s) 101
BstF5I GGATG 1 cut(s) 99
BstFNI CGCG 3 cut(s) 128, 312, 619
BstH2I RGCGCY 1 cut(s) 271
BstHHI GCGC 2 cut(s) 270, 312
BstKTI GATC 1 cut(s) 59
BstMAI GTCTC 2 cut(s) 344, 659
BstMBI GATC 1 cut(s) 56
BstUI CGCG 3 cut(s) 128, 312, 619
BstV1I GCAGC 1 cut(s) 159
BsuRI GGCC 1 cut(s) 122
BtsCI GGATG 1 cut(s) 99
BtsIMutI CAGTG 1 cut(s) 227
BtuMI TCGCGA 1 cut(s) 128
Cac8I GCNNGC 1 cut(s) 101
CfoI GCGC 2 cut(s) 270, 312
Csp6I GTAC 3 cut(s) 205, 460, 643
CviAII CATG 3 cut(s) 67, 85, 500
CviJI RGCY 6 cut(s) 51, 109, 122, 150, 164, 631
CviKI_1 RGCY 6 cut(s) 51, 109, 122, 150, 164, 631
CviQI GTAC 3 cut(s) 205, 460, 643
DpnI GATC 1 cut(s) 58
DpnII GATC 1 cut(s) 56
Eam1104I CTCTTC 2 cut(s) 504, 552
EarI CTCTTC 2 cut(s) 504, 552
EciI GGCGGA 1 cut(s) 587
Eco147I AGGCCT 1 cut(s) 122
Eco57I CTGAAG 1 cut(s) 251
Eco88I CYCGRG 2 cut(s) 52, 116
EcoRI GAATTC 2 cut(s) 185, 196
FaeI CATG 3 cut(s) 70, 88, 503
FaiI YATR 8 cut(s) 68, 86, 219, 324, 476, 489, 501, 638
FatI CATG 3 cut(s) 66, 84, 499
FauI CCCGC 1 cut(s) 92
Fnu4HI GCNGC 1 cut(s) 148
FokI GGATG 1 cut(s) 106
Fsp4HI GCNGC 1 cut(s) 148
FspBI CTAG 1 cut(s) 594
GlaI GCGC 2 cut(s) 269, 311
GluI GCNGC 1 cut(s) 148
GsaI CCCAGC 1 cut(s) 164
GsuI CTGGAG 3 cut(s) 405, 435, 683
HaeII RGCGCY 1 cut(s) 271
HaeIII GGCC 1 cut(s) 122
HhaI GCGC 2 cut(s) 270, 312
Hin1II CATG 3 cut(s) 70, 88, 503
Hin6I GCGC 2 cut(s) 268, 310
HinP1I GCGC 2 cut(s) 268, 310
HinfI GANTC 1 cut(s) 7
HphI GGTGA 1 cut(s) 311
Hpy166II GTNNAC 1 cut(s) 211
Hpy188III TCNNGA 3 cut(s) 54, 127, 662
Hpy8I GTNNAC 1 cut(s) 211
HpyAV CCTTC 4 cut(s) 133, 328, 508, 547
HpyCH4III ACNGT 1 cut(s) 464
HpyCH4IV ACGT 2 cut(s) 207, 692
HpySE526I ACGT 2 cut(s) 207, 692
Hsp92II CATG 3 cut(s) 70, 88, 503
HspAI GCGC 2 cut(s) 268, 310
Kzo9I GATC 1 cut(s) 56
LguI GCTCTTC 1 cut(s) 552
LmnI GCTCC 1 cut(s) 307
LpnPI CCDG 6 cut(s) 174, 369, 399, 530, 645, 647
Lsp1109I GCAGC 1 cut(s) 159
LweI GCATC 2 cut(s) 594, 664
MaeI CTAG 1 cut(s) 594
MaeII ACGT 2 cut(s) 207, 692
MaeIII GTNAC 1 cut(s) 225
MalI GATC 1 cut(s) 58
MboI GATC 1 cut(s) 56
MhlI GDGCHC 1 cut(s) 469
MluCI AATT 3 cut(s) 41, 185, 196
MluI ACGCGT 1 cut(s) 617
MroXI GAANNNNTTC 1 cut(s) 185
MseI TTAA 2 cut(s) 171, 609
MslI CAYNNNNRTG 1 cut(s) 504
MspCI CTTAAG 1 cut(s) 608
MvnI CGCG 3 cut(s) 128, 312, 619
NdeII GATC 1 cut(s) 56
NlaIII CATG 3 cut(s) 70, 88, 503
NmuCI GTSAC 1 cut(s) 225
NruI TCGCGA 1 cut(s) 128
PaeR7I CTCGAG 2 cut(s) 52, 116
PceI AGGCCT 1 cut(s) 122
PciSI GCTCTTC 1 cut(s) 552
PdmI GAANNNNTTC 1 cut(s) 185
PfeI GAWTC 1 cut(s) 7
PkrI GCNGC 1 cut(s) 149
Ppu21I YACGTR 1 cut(s) 208
PspFI CCCAGC 1 cut(s) 160
PspXI VCTCGAGB 1 cut(s) 116
PsrI GAACNNNNNNTAC 2 cut(s) 134, 166
RruI TCGCGA 1 cut(s) 128
RsaI GTAC 3 cut(s) 206, 461, 644
RsaNI GTAC 3 cut(s) 205, 460, 643
RseI CAYNNNNRTG 1 cut(s) 504
SapI GCTCTTC 1 cut(s) 552
SaqAI TTAA 2 cut(s) 171, 609
SatI GCNGC 1 cut(s) 148
Sau3AI GATC 1 cut(s) 56
SduI GDGCHC 1 cut(s) 469
SetI ASST 7 cut(s) 152, 166, 210, 421, 628, 679, 695
SfaNI GCATC 2 cut(s) 594, 664
Sfr274I CTCGAG 2 cut(s) 52, 116
SlaI CTCGAG 2 cut(s) 52, 116
SmiMI CAYNNNNRTG 1 cut(s) 504
SmlI CTYRAG 3 cut(s) 52, 116, 608
SmoI CTYRAG 3 cut(s) 52, 116, 608
Sse9I AATT 3 cut(s) 41, 185, 196
SseBI AGGCCT 1 cut(s) 122
SsiI CCGC 3 cut(s) 99, 317, 572
SspMI CTAG 1 cut(s) 594
StuI AGGCCT 1 cut(s) 122
TaaI ACNGT 1 cut(s) 464
TaiI ACGT 2 cut(s) 210, 695
TaqI TCGA 6 cut(s) 10, 53, 59, 117, 140, 273
TasI AATT 3 cut(s) 41, 185, 196
TatI WGTACW 1 cut(s) 642
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 2 cut(s) 171, 609
Tru9I TTAA 2 cut(s) 171, 609
TscAI CASTG 1 cut(s) 234
TseFI GTSAC 1 cut(s) 225
TseI GCWGC 1 cut(s) 147
Tsp45I GTSAC 1 cut(s) 225
TspDTI ATGAA 6 cut(s) 20, 83, 509, 516, 522, 653
TspGWI ACGGA 1 cut(s) 393
TspRI CASTG 1 cut(s) 234
Vha464I CTTAAG 1 cut(s) 608
XapI RAATTY 3 cut(s) 41, 185, 196
XhoI CTCGAG 2 cut(s) 52, 116
XmnI GAANNNNTTC 1 cut(s) 185
XspI CTAG 1 cut(s) 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.